Rmu_sc0003277.1_g000001

Quinone oxidoreductase-like protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003277.1
OG0004349
Physical Location & Seq
Forward (+)
6937 .. 7649
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003277.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atgagcttaaactacgccaattacctgcagatacttggcaagtaccaagagaagtcgcctctgcctttcatcttcggcttcgattacttcggcgtcgtctatgccgtcggccccgccgtctccaagtttaaagtcagcgatgctgtttgctccgtcaccgccctcgggtccttttctcaattcatcgtcgtcgatcagtcacttctgtttggagtgtcggaagggtgtggtctggtggctgctggtgcactgccggttgcatttaggacctctcatgtggctcttcttcaccaggccaatttgagctccggtcaagtattgctggtgcttggtgcagctggaggtggtggacttgcggtggtgcaaattggaaaggttgttggagccgttgttattgtagtagctaggggagctgagaaggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

141

Amino Acids

14.45

Weight (kDa)

8.62

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AciI CCGC 3 cut(s) 114, 159, 356
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 165
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 5 cut(s) 6, 306, 338, 404, 413
AluI AGCT 5 cut(s) 6, 306, 338, 404, 413
Alw21I GWGCWC 2 cut(s) 250, 308
Alw26I GTCTC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 109, 294
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 239, 335
AspS9I GGNCC 3 cut(s) 110, 168, 267
AsuHPI GGTGA 2 cut(s) 148, 281
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 168, 267
BaeGI GKGCMC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 250, 308
BbvI GCAGC 2 cut(s) 226, 347
BceAI ACGGC 3 cut(s) 89, 101, 371
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 33
BisI GCNGC 2 cut(s) 240, 336
BlsI GCNGC 2 cut(s) 241, 337
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 168, 267
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 110, 168, 267
BmiI GGNNCC 3 cut(s) 112, 169, 385
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 253
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 2 cut(s) 226, 347
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 111, 296
BsiHKAI GWGCWC 2 cut(s) 250, 308
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 254, 309
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 2 cut(s) 111, 296
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 250, 308
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 3 cut(s) 114, 159, 356
BspANI GGCC 2 cut(s) 111, 296
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 112, 169, 385
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 33
BspQI GCTCTTC 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 414
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 245, 410
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 226, 347
BsuRI GGCC 2 cut(s) 111, 296
BtgZI GCGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 3 cut(s) 110, 168, 267
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 275
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 414
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraI TTTAAA 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 168, 267
Eco53kI GAGCTC 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 306
EcoO109I RGGNCCY 2 cut(s) 168, 267
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 278
FaiI YATR 2 cut(s) 102, 276
FatI CATG 1 cut(s) 274
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 240, 336
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 240, 336
FspBI CTAG 1 cut(s) 405
GluI GCNGC 2 cut(s) 240, 336
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 2 cut(s) 111, 296
HapII CCGG 2 cut(s) 254, 309
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 278
HpaII CCGG 2 cut(s) 254, 309
HphI GGTGA 2 cut(s) 148, 281
Hpy166II GTNNAC 2 cut(s) 248, 350
Hpy188I TCNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 248, 350
Hpy99I CGWCG 4 cut(s) 98, 110, 191, 194
HpyAV CCTTC 2 cut(s) 215, 412
HpyCH4V TGCA 5 cut(s) 28, 248, 260, 335, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 410
HpyF3I CTNAG 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 1 cut(s) 193
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 4 cut(s) 155, 311, 383, 410
LpnPI CCDG 9 cut(s) 38, 218, 228, 267, 278, 305, 308, 322, 324
Lsp1109I GCAGC 2 cut(s) 226, 347
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 154, 198
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 3 cut(s) 64, 275, 278
MhlI GDGCHC 2 cut(s) 250, 308
MluCI AATT 4 cut(s) 19, 179, 298, 366
MmeI TCCRAC 2 cut(s) 198, 361
MnlI CCTC 4 cut(s) 69, 173, 280, 335
MseI TTAA 2 cut(s) 8, 129
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 2 cut(s) 254, 309
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 245, 410
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 3 cut(s) 112, 169, 385
NmuCI GTSAC 2 cut(s) 154, 198
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 114
PkrI GCNGC 2 cut(s) 241, 337
PpuMI RGGWCCY 2 cut(s) 168, 267
Psp124BI GAGCTC 1 cut(s) 308
Psp5II RGGWCCY 2 cut(s) 168, 267
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 112, 169, 385
PspPI GGNCC 3 cut(s) 110, 168, 267
PspPPI RGGWCCY 2 cut(s) 168, 267
PstI CTGCAG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SacI GAGCTC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 8, 129
SatI GCNGC 2 cut(s) 240, 336
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 3 cut(s) 110, 168, 267
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 2 cut(s) 250, 308
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 2 cut(s) 168, 267
Sse9I AATT 4 cut(s) 19, 179, 298, 366
SsiI CCGC 3 cut(s) 114, 159, 356
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 291
TaqI TCGA 2 cut(s) 81, 192
TasI AATT 4 cut(s) 19, 179, 298, 366
Tru1I TTAA 2 cut(s) 8, 129
Tru9I TTAA 2 cut(s) 8, 129
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 2 cut(s) 154, 198
TseI GCWGC 2 cut(s) 239, 335
Tsp45I GTSAC 2 cut(s) 154, 198
TspDTI ATGAA 2 cut(s) 58, 172
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 168, 267
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.