Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

11577258 .. 11580209

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGTCGACGCCGTCGGCCCCGCCATCTACAAGTTTAAAGTCGGCGATGCTGTTTGCTCCGTTGCTGCCCTCGGGTCCTTTTCTCAGTTCATCATCATCGATCAGTCACTTCTGTGAGTTCTCTGTCATATACACAATATTGATAATTCTAATTGAGTTGAATTTGATTGTGGAAATTTTTGGTGTTGGAAGGTTTGGAGTCCCGAAAGGTTGTGGTCTGGTGGCTGTTGGTGCACTGCCGGTTGCATTTGGGACCTCTCATGTGGCTCTTCTTCACCAGGCCAATTTCAGCTCTGGTCAAGGAGGGGAGGTTAGAAACTTAAAATTGGATCTGGGCTGTGTTGGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

117

Amino Acids

12.11

Weight (kDa)

6.8

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	163, 177
AcyI	GRCGYC	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	279
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Alw21I	GWGCWC	1 cut(s)	238
Alw44I	GTGCAC	1 cut(s)	234
AlwI	GGATC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	18, 282
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	163, 177
AspS9I	GGNCC	3 cut(s)	19, 77, 255
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	77, 255
BaeGI	GKGCMC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	281
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	77, 255
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	19, 77, 255
BmiI	GGNNCC	3 cut(s)	21, 78, 256
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse118I	RCCGGY	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	20, 284
BshVI	ATCGAT	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	188, 268
BsmFI	GGGAC	2 cut(s)	188, 268
BsnI	GGCC	2 cut(s)	20, 284
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	102, 331
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	20, 284
BspCNI	CTCAG	1 cut(s)	99
BspDI	ATCGAT	1 cut(s)	101
BspLI	GGNNCC	3 cut(s)	21, 78, 256
BspPI	GGATC	1 cut(s)	339
BspQI	GCTCTTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	102, 331
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	105, 334
BstMBI	GATC	2 cut(s)	102, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	20, 284
BsuTUI	ATCGAT	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	3 cut(s)	19, 77, 255
ClaI	ATCGAT	1 cut(s)	101
CseI	GACGC	1 cut(s)	19
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	6 cut(s)	20, 227, 269, 284, 294, 339
CviKI_1	RGCY	6 cut(s)	20, 227, 269, 284, 294, 339
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	104, 333
DpnII	GATC	2 cut(s)	102, 331
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	77, 255
Eco88I	CYCGRG	1 cut(s)	73
EcoO109I	RGGNCCY	2 cut(s)	77, 255
EcoRII	CCWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	266
FaiI	YATR	3 cut(s)	131, 133, 264
FaqI	GGGAC	2 cut(s)	188, 268
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	20, 284
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	9, 236
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	2 cut(s)	9, 236
Hpy99I	CGWCG	3 cut(s)	10, 13, 19
HpyAV	CCTTC	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	236, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	102, 331
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	206, 255, 266, 282, 293, 320
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	104, 333
MboI	GATC	2 cut(s)	102, 331
MboII	GAAGA	2 cut(s)	263, 266
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	6 cut(s)	147, 153, 163, 177, 286, 326
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	82, 268, 299, 304
MseI	TTAA	3 cut(s)	38, 323, 352
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	2 cut(s)	102, 331
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	3 cut(s)	21, 78, 256
NmuCI	GTSAC	1 cut(s)	107
OliI	CACNNNNGTG	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	2 cut(s)	77, 255
Psp5II	RGGWCCY	2 cut(s)	77, 255
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	21, 78, 256
PspPI	GGNCC	3 cut(s)	19, 77, 255
PspPPI	RGGWCCY	2 cut(s)	77, 255
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	38, 323, 352
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	102, 331
Sau96I	GGNCC	3 cut(s)	19, 77, 255
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	5 cut(s)	197, 214, 260, 296, 315
SfaNI	GCATC	1 cut(s)	39
SgrDI	CGTCGACG	1 cut(s)	7
SinI	GGWCC	2 cut(s)	77, 255
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	6 cut(s)	147, 153, 163, 177, 286, 326
SsiI	CCGC	1 cut(s)	23
SspI	AATATT	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	279
TaqI	TCGA	2 cut(s)	8, 101
TasI	AATT	6 cut(s)	147, 153, 163, 177, 286, 326
Tru1I	TTAA	3 cut(s)	38, 323, 352
Tru9I	TTAA	3 cut(s)	38, 323, 352
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	243
Tth111I	GACNNNGTC	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	2 cut(s)	77, 255
XapI	RAATTY	2 cut(s)	163, 177
XmiI	GTMKAC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.