Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

23153199 .. 23155182

Gene Structure 1984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21430.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGGCTCTGGTGTGCCGGAAACTGGGCGACCCGACACAACCCATATCAGACGGAGGAGCGGAGAAAGCGATAGTGGTGGAGAAGAACCACCCAATTCCGGAATTGGGTTCTCCGACATCGGTGAGAGTGAGAGTGAAAGCTGCGAGCTTGAACTACGCCAATTATCTGCAGATACTGGGTAAGTACCAGGAGAAGCCGCCCCTCCCTTTCATCCCCGGCTCCGACTACTCCGGGACCGTCGACGCCGTCGGACCCGCCGTCTCCAAGTTCAAGGTCGGCGACCCTGTTTGCTCTTTTGCCGCCCTCGGCTCTTTCGCCCAGTTCATCGTCCGATCAGAAAGAGCTGTTTGGAGTGCCGGAGGGGGTGTGATCTGGTGGCTGCCGGTGCACTGCCTGTTGCATTTGGGACCTCGCACGTGGCTCTTGTTCATAGGGCCAATTTTTCCTCCGGTCAAGTATTGCTGGTTCTTGGTGCAGCTGGAGGAGTTGGCCTTGCGGCCATACAGATTGGCAAGGTTGTGGGAGCCATTGTCTAGGGGAGCTGAGAAGGTGGAGTATTTGAAGCATTTGGGGGTTGATCATGTGGTGGACTCGAGCAGCGAAAATGTTATCCAAAGTGTGAAGGATTTCTTGAAATCCCGAAAGCTTAAAGGGGTTGACGTTTTGTATGATCCGGTTGAAGGCAAGCTTACGAAAGAGGCCATGAAGGTTTTGAGTTGGGGAGCCAACATTTTGGTCATAGGCTTTGCAAGTGGAGAGGTCCCTGTCATTCCTGCAAATATTGCACTCGTTAAGAACTGGACGGTGCATGGACTTTACTGTGGTAGCTACAAAATACATCAACCAGGTGTTCTTGAAGAATCACTCAAGGAGCTACTGTCCTGGGTGGCAAGAGGCTTGATCAGCATCCGCATTTCTCATGCTTATCGCCTGCCCGAGGCCAATCTCGCTTTCTCTGCCATCAAAGATAGGAAAGTCATTGGAAAAGTGATGCTTGTTCTCGATGACGAGAGAAGTGCAAGGTCAAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

346

Amino Acids

38.08

Weight (kDa)

9.2

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	6 cut(s)	62, 200, 258, 303, 499, 913
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	1 cut(s)	500
AcvI	CACGTG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	5 cut(s)	25, 100, 107, 683, 940
AgsI	TTSAA	6 cut(s)	154, 274, 565, 637, 683, 860
AhdI	GACNNNNNGTC	1 cut(s)	260
AjnI	CCWGG	3 cut(s)	189, 847, 884
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	268
Alw44I	GTGCAC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	668
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	2 cut(s)	595, 938
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	5 cut(s)	437, 492, 500, 702, 942
ApaLI	GTGCAC	1 cut(s)	389
ApeKI	GCWGC	4 cut(s)	143, 382, 478, 600
Asp700I	GAANNNNTTC	1 cut(s)	629
AspS9I	GGNCC	5 cut(s)	237, 254, 410, 437, 763
AsuC2I	CCSGG	2 cut(s)	219, 235
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	2 cut(s)	595, 938
AvaII	GGWCC	4 cut(s)	237, 254, 410, 763
BaeGI	GKGCMC	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	4 cut(s)	130, 369, 490, 612
BccI	CCATC	1 cut(s)	971
BceAI	ACGGC	2 cut(s)	233, 245
BcgI	CGANNNNNNTGC	2 cut(s)	1001, 1035
BciT130I	CCWGG	3 cut(s)	191, 849, 886
BclI	TGATCA	2 cut(s)	580, 903
BcnI	CCSGG	2 cut(s)	219, 235
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	7 cut(s)	144, 200, 303, 383, 479, 500, 601
BlsI	GCNGC	7 cut(s)	145, 201, 304, 384, 480, 501, 602
Bme1390I	CCNGG	5 cut(s)	191, 219, 235, 849, 886
Bme18I	GGWCC	4 cut(s)	237, 254, 410, 763
BmeRI	GACNNNNNGTC	1 cut(s)	260
BmeT110I	CYCGRG	2 cut(s)	595, 938
BmgT120I	GGNCC	5 cut(s)	237, 254, 410, 437, 763
BmiI	GGNNCC	7 cut(s)	223, 238, 256, 411, 528, 727, 765
BmrFI	CCNGG	5 cut(s)	191, 219, 235, 849, 886
BmrI	ACTGGG	3 cut(s)	35, 188, 316
BmsI	GCATC	2 cut(s)	918, 984
BmuI	ACTGGG	3 cut(s)	35, 188, 316
BpmI	CTGGAG	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	2 cut(s)	219, 235
BsaAI	YACGTR	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	908
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	4 cut(s)	217, 307, 885, 939
BsaWI	WCCGGW	3 cut(s)	100, 451, 676
BsaXI	ACNNNNNCTCC	6 cut(s)	354, 384, 518, 548, 866, 896
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 100, 107, 683, 940
Bse118I	RCCGGY	1 cut(s)	385
Bse1I	ACTGG	4 cut(s)	30, 183, 322, 806
Bse8I	GATNNNNATC	1 cut(s)	908
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	3 cut(s)	191, 849, 886
BseDI	CCNNGG	4 cut(s)	217, 307, 885, 939
BseGI	GGATG	2 cut(s)	213, 909
BseJI	GATNNNNATC	1 cut(s)	908
BseLI	CCNNNNNNNGG	5 cut(s)	25, 100, 107, 683, 940
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	4 cut(s)	30, 183, 322, 806
BseRI	GAGGAG	2 cut(s)	72, 500
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	4 cut(s)	130, 369, 490, 612
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	5 cut(s)	439, 494, 502, 704, 944
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	595, 938
BsiSI	CCGG	8 cut(s)	19, 101, 219, 234, 360, 386, 452, 677
BslFI	GGGAC	3 cut(s)	250, 423, 749
BslI	CCNNNNNNNGG	5 cut(s)	25, 100, 107, 683, 940
BsmAI	GTCTC	1 cut(s)	268
BsmBI	CGTCTC	1 cut(s)	268
BsmFI	GGGAC	3 cut(s)	250, 423, 749
BsnI	GGCC	5 cut(s)	439, 494, 502, 704, 944
BsoBI	CYCGRG	2 cut(s)	595, 938
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	5 cut(s)	335, 372, 580, 673, 903
BspACI	CCGC	6 cut(s)	62, 200, 258, 303, 499, 913
BspANI	GGCC	5 cut(s)	439, 494, 502, 704, 944
BspCNI	CTCAG	1 cut(s)	538
BspEI	TCCGGA	1 cut(s)	100
BspLI	GGNNCC	7 cut(s)	223, 238, 256, 411, 528, 727, 765
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	668
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	385
BsrI	ACTGG	4 cut(s)	30, 183, 322, 806
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	4 cut(s)	217, 307, 885, 939
BssMI	GATC	5 cut(s)	335, 372, 580, 673, 903
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	191, 849, 886
Bst4CI	ACNGT	4 cut(s)	241, 808, 824, 882
BstACI	GRCGYC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBAI	YACGTR	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	148, 689, 935
BstDEI	CTNAG	1 cut(s)	546
BstENI	CCTNNNNNAGG	1 cut(s)	938
BstF5I	GGATG	2 cut(s)	213, 909
BstKTI	GATC	5 cut(s)	338, 375, 583, 676, 906
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	5 cut(s)	335, 372, 580, 673, 903
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 388, 785, 906, 950, 959
BstNI	CCWGG	3 cut(s)	191, 849, 886
BstSCI	CCNGG	5 cut(s)	189, 217, 233, 847, 884
BstSFI	CTRYAG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	4 cut(s)	130, 369, 490, 612
BstXI	CCANNNNNNTGG	1 cut(s)	736
BsuRI	GGCC	5 cut(s)	439, 494, 502, 704, 944
BtsCI	GGATG	2 cut(s)	213, 909
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	148, 689, 935
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	5 cut(s)	237, 254, 410, 437, 763
CseI	GACGC	1 cut(s)	254
CsiI	ACCWGGT	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	584, 706, 812, 923
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	5 cut(s)	337, 374, 582, 675, 905
DpnII	GATC	5 cut(s)	335, 372, 580, 673, 903
DriI	GACNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	500
Eam1105I	GACNNNNNGTC	1 cut(s)	260
Eco47I	GGWCC	4 cut(s)	237, 254, 410, 763
Eco72I	CACGTG	1 cut(s)	420
Eco88I	CYCGRG	2 cut(s)	595, 938
EcoNI	CCTNNNNNAGG	1 cut(s)	938
EcoO109I	RGGNCCY	2 cut(s)	410, 763
EcoRII	CCWGG	3 cut(s)	189, 847, 884
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	4 cut(s)	587, 709, 815, 926
FaiI	YATR	9 cut(s)	47, 434, 505, 585, 672, 707, 743, 813, 924
FalI	AAGNNNNNCTT	6 cut(s)	617, 649, 675, 707, 981, 1013
FaqI	GGGAC	3 cut(s)	250, 423, 749
FatI	CATG	4 cut(s)	583, 705, 811, 922
FauI	CCCGC	1 cut(s)	265
FbaI	TGATCA	2 cut(s)	580, 903
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	7 cut(s)	144, 200, 303, 383, 479, 500, 601
FokI	GGATG	2 cut(s)	200, 896
Fsp4HI	GCNGC	7 cut(s)	144, 200, 303, 383, 479, 500, 601
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	7 cut(s)	144, 200, 303, 383, 479, 500, 601
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	5 cut(s)	439, 494, 502, 704, 944
HapII	CCGG	8 cut(s)	19, 101, 219, 234, 360, 386, 452, 677
HgaI	GACGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	4 cut(s)	587, 709, 815, 926
HincII	GTYRAC	2 cut(s)	244, 661
HindII	GTYRAC	2 cut(s)	244, 661
HindIII	AAGCTT	3 cut(s)	647, 689, 1031
HinfI	GANTC	2 cut(s)	593, 863
HpaII	CCGG	8 cut(s)	19, 101, 219, 234, 360, 386, 452, 677
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	4 cut(s)	244, 391, 592, 661
Hpy188I	TCNGA	6 cut(s)	52, 117, 226, 254, 335, 340
Hpy188III	TCNNGA	5 cut(s)	101, 634, 642, 857, 1004
Hpy8I	GTNNAC	4 cut(s)	244, 391, 592, 661
Hpy99I	CGWCG	3 cut(s)	245, 248, 254
HpyAV	CCTTC	4 cut(s)	544, 619, 677, 703
HpyCH4III	ACNGT	4 cut(s)	241, 808, 824, 882
HpyCH4IV	ACGT	2 cut(s)	419, 663
HpyCH4V	TGCA	9 cut(s)	172, 391, 403, 478, 752, 779, 788, 811, 1022
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 388, 785, 906, 950, 959
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	2 cut(s)	419, 663
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	587, 709, 815, 926
Kpn2I	TCCGGA	1 cut(s)	100
Ksp22I	TGATCA	2 cut(s)	580, 903
Kzo9I	GATC	5 cut(s)	335, 372, 580, 673, 903
LmnI	GCTCC	6 cut(s)	59, 227, 526, 542, 725, 874
Lsp1109I	GCAGC	4 cut(s)	130, 369, 490, 612
LweI	GCATC	2 cut(s)	918, 984
MabI	ACCWGGT	1 cut(s)	847
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	2 cut(s)	419, 663
MalI	GATC	5 cut(s)	337, 374, 582, 675, 905
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	5 cut(s)	335, 372, 580, 673, 903
MboII	GAAGA	2 cut(s)	97, 872
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	4 cut(s)	96, 104, 163, 441
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	3 cut(s)	140, 232, 249
MroI	TCCGGA	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	629
MseI	TTAA	2 cut(s)	651, 795
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	8 cut(s)	19, 101, 219, 234, 360, 386, 452, 677
MspR9I	CCNGG	5 cut(s)	191, 219, 235, 849, 886
MvaI	CCWGG	3 cut(s)	191, 849, 886
MwoI	GCNNNNNNNGC	6 cut(s)	68, 388, 785, 906, 950, 959
NciI	CCSGG	2 cut(s)	219, 235
NdeII	GATC	5 cut(s)	335, 372, 580, 673, 903
NlaIII	CATG	4 cut(s)	587, 709, 815, 926
NlaIV	GGNNCC	7 cut(s)	223, 238, 256, 411, 528, 727, 765
NmeAIII	GCCGAG	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	863
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	7 cut(s)	145, 201, 304, 384, 480, 501, 602
PleI	GAGTC	1 cut(s)	587
PmaCI	CACGTG	1 cut(s)	420
PmlI	CACGTG	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	587
Ppu21I	YACGTR	1 cut(s)	420
PpuMI	RGGWCCY	2 cut(s)	410, 763
Psp5II	RGGWCCY	2 cut(s)	410, 763
Psp6I	CCWGG	3 cut(s)	189, 847, 884
PspCI	CACGTG	1 cut(s)	420
PspGI	CCWGG	3 cut(s)	189, 847, 884
PspN4I	GGNNCC	7 cut(s)	223, 238, 256, 411, 528, 727, 765
PspPI	GGNCC	5 cut(s)	237, 254, 410, 437, 763
PspPPI	RGGWCCY	2 cut(s)	410, 763
PspXI	VCTCGAGB	1 cut(s)	595
PsrI	GAACNNNNNNTAC	2 cut(s)	452, 484
PstI	CTGCAG	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	651, 795
SatI	GCNGC	7 cut(s)	144, 200, 303, 383, 479, 500, 601
Sau3AI	GATC	5 cut(s)	335, 372, 580, 673, 903
Sau96I	GGNCC	5 cut(s)	237, 254, 410, 437, 763
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	5 cut(s)	191, 219, 235, 849, 886
SduI	GDGCHC	1 cut(s)	393
SexAI	ACCWGGT	1 cut(s)	847
SfaNI	GCATC	2 cut(s)	918, 984
SfcI	CTRYAG	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	595
SgrDI	CGTCGACG	1 cut(s)	242
SinI	GGWCC	4 cut(s)	237, 254, 410, 763
SlaI	CTCGAG	1 cut(s)	595
SmlI	CTYRAG	2 cut(s)	595, 869
SmoI	CTYRAG	2 cut(s)	595, 869
Sse9I	AATT	4 cut(s)	96, 104, 163, 441
SsiI	CCGC	6 cut(s)	62, 200, 258, 303, 499, 913
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	5 cut(s)	189, 217, 233, 847, 884
TaaI	ACNGT	4 cut(s)	241, 808, 824, 882
TaiI	ACGT	2 cut(s)	422, 666
TaqI	TCGA	3 cut(s)	243, 596, 1005
TasI	AATT	4 cut(s)	96, 104, 163, 441
TauI	GCSGC	3 cut(s)	202, 305, 502
TfiI	GAWTC	1 cut(s)	863
Tru1I	TTAA	2 cut(s)	651, 795
Tru9I	TTAA	2 cut(s)	651, 795
TscAI	CASTG	1 cut(s)	398
TseI	GCWGC	4 cut(s)	143, 382, 478, 600
TspDTI	ATGAA	4 cut(s)	202, 316, 421, 722
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	389
VpaK11BI	GGWCC	4 cut(s)	237, 254, 410, 763
XagI	CCTNNNNNAGG	1 cut(s)	938
XhoI	CTCGAG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.