Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

61394845 .. 61397026

Gene Structure 2182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG382800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGGCTTTGGTGTGCAAGAAATTGGGGGATCCAACGGCGCCGATTTCAGAAGATAAAGCAATAGTGATCGAGAAGGGTTATCCGATTCCTGAACTGGAGACTCCCACATCGGTGAGAGTGAAAGTGAAAGCCACGAGCTTGAACTACGCCAATTACCTTCAGATACTAGGCAAGTACCAAGAGAAGCCGCCTCTGCCTTTCATCCCCGGCTCCGATTACTCCGGCGTAGTCGACGCCGTCGGCCCCGCCGTCTCCAAGTTCAGAGTCGGCGACGCTGTTTGCTCCTTCGCCGCACTCGGCTCCTTTGCCCAGTTCATCGTCGCCGATCAGTCACTTCTGTTTGGAGTGCCGGCGGGGTGTGATCTGGTGGCTGCTGGTGCACTGCCGGTTGCATTTGGGACCTCTCATGTGGCTCTTCGTCACCGGGCCAATTTGAGCTCCGGTCAAGTATTGCTAGTGCTTGGTGCAGCTGGAGGTGTTGGACTTGCGGCGGTACAGATTGGGAAGGTTGTTGGAGCCGTTGTTATTGCGGTAGCTAGGGGGGCTGAGAAGGTGCATTATTTGAAGTCGTTGGGGGTTGATCATGTGGTGGACTCCAGCAGTCAAAGTATTATCCAGAGTGTGAAGGACTTCTTGAAAACCAGAAAGCTTAAAGGGGTTGATGTTTTGTATGATCCGGTTGGAGGGAAACTTACTAAAGAAGCCATGAAGGTATTGAATTGGGGAGCACAGATTTTGGTTATAGGCTTTGCGAGTGGAGAGGTCCCTGTCATTCCCGCCAATATTGCTCTTGTTAAGAACTGGACAGTGCATGGACTGTACTGGGGTAGCTACAGAATACATCGACCAGCTGTTCTTGAAGATTCAGTTAATGAACTACTATCATGGGTGGCGCGAGGCCTGATCACCATCCGCATTTCTCATACTTACCGCCTGCCAGAGGCCAATCTTGCCTTTTCTGCCATCAAAGATAGGAAAGCCATTGGGAAAGTGATGATTGTTCTTGACGAGCCAAGTAGTGTAAGGTCAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

346

Amino Acids

36.71

Weight (kDa)

9.33

Isoelectric Point (pI)

25.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 118	4.3e-14	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	160 - 280	2.1e-22	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	192 - 333	1.5e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	898
AclWI	GGATC	3 cut(s)	26, 39, 671
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	2 cut(s)	41, 237
AfaI	GTAC	3 cut(s)	179, 498, 824
AfiI	CCNNNNNNNGG	2 cut(s)	686, 943
AgsI	TTSAA	5 cut(s)	145, 568, 640, 721, 863
AleI	CACNNNNGTG	1 cut(s)	113
AluBI	AGCT	8 cut(s)	141, 441, 473, 539, 652, 834, 854, 1036
AluI	AGCT	8 cut(s)	141, 441, 473, 539, 652, 834, 854, 1036
Alw21I	GWGCWC	3 cut(s)	385, 443, 733
Alw26I	GTCTC	2 cut(s)	95, 259
Alw44I	GTGCAC	1 cut(s)	381
AlwI	GGATC	3 cut(s)	26, 39, 671
AoxI	GGCC	4 cut(s)	244, 429, 901, 945
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	374, 470
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	2 cut(s)	43, 898
AspS9I	GGNCC	4 cut(s)	245, 402, 429, 766
AsuC2I	CCSGG	2 cut(s)	210, 428
AsuHPI	GGTGA	3 cut(s)	127, 416, 901
AvaII	GGWCC	2 cut(s)	402, 766
BaeGI	GKGCMC	1 cut(s)	385
BamHI	GGATCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	136
Bbv12I	GWGCWC	3 cut(s)	385, 443, 733
BbvI	GCAGC	2 cut(s)	361, 482
BccI	CCATC	2 cut(s)	920, 974
BceAI	ACGGC	4 cut(s)	54, 224, 236, 506
BclI	TGATCA	2 cut(s)	583, 906
BcnI	CCSGG	2 cut(s)	210, 428
BcoDI	GTCTC	2 cut(s)	95, 259
BfaI	CTAG	3 cut(s)	170, 458, 540
BfmI	CTRYAG	1 cut(s)	835
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	5 cut(s)	191, 294, 375, 471, 492
BlsI	GCNGC	5 cut(s)	192, 295, 376, 472, 493
Bme1390I	CCNGG	2 cut(s)	210, 428
Bme18I	GGWCC	2 cut(s)	402, 766
BmgT120I	GGNCC	4 cut(s)	245, 402, 429, 766
BmiI	GGNNCC	8 cut(s)	33, 42, 214, 247, 304, 403, 520, 768
BmrFI	CCNGG	2 cut(s)	210, 428
BmrI	ACTGGG	2 cut(s)	307, 835
BmuI	ACTGGG	2 cut(s)	307, 835
BpmI	CTGGAG	3 cut(s)	119, 495, 583
BpuMI	CCSGG	2 cut(s)	210, 428
BsaBI	GATNNNNATC	1 cut(s)	911
BsaHI	GRCGYC	2 cut(s)	41, 237
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	443, 679
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 943
Bse118I	RCCGGY	2 cut(s)	352, 388
Bse1I	ACTGG	4 cut(s)	102, 313, 809, 830
Bse8I	GATNNNNATC	1 cut(s)	911
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	2 cut(s)	204, 912
BseJI	GATNNNNATC	1 cut(s)	911
BseLI	CCNNNNNNNGG	2 cut(s)	686, 943
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	4 cut(s)	102, 313, 809, 830
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	361, 482
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	898
BshFI	GGCC	4 cut(s)	246, 431, 903, 947
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	3 cut(s)	385, 443, 733
BsiSI	CCGG	7 cut(s)	210, 225, 353, 389, 427, 444, 680
BslFI	GGGAC	2 cut(s)	415, 752
BslI	CCNNNNNNNGG	2 cut(s)	686, 943
BsmAI	GTCTC	2 cut(s)	95, 259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	415, 752
BsnI	GGCC	4 cut(s)	246, 431, 903, 947
Bsp1286I	GDGCHC	3 cut(s)	385, 443, 733
Bsp143I	GATC	7 cut(s)	31, 69, 328, 364, 583, 676, 906
BspANI	GGCC	4 cut(s)	246, 431, 903, 947
BspCNI	CTCAG	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	898
BspLI	GGNNCC	8 cut(s)	33, 42, 214, 247, 304, 403, 520, 768
BspPI	GGATC	3 cut(s)	26, 39, 671
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	40
BsrFI	RCCGGY	2 cut(s)	352, 388
BsrI	ACTGG	4 cut(s)	102, 313, 809, 830
BssAI	RCCGGY	2 cut(s)	352, 388
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	7 cut(s)	31, 69, 328, 364, 583, 676, 906
BssNI	GRCGYC	2 cut(s)	41, 237
BssSI	CACGAG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	811, 822
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	2 cut(s)	41, 237
BstC8I	GCNNGC	2 cut(s)	354, 938
BstDEI	CTNAG	1 cut(s)	549
BstENI	CCTNNNNNAGG	1 cut(s)	941
BstF5I	GGATG	2 cut(s)	204, 912
BstFNI	CGCG	1 cut(s)	898
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 898
BstKTI	GATC	7 cut(s)	34, 72, 331, 367, 586, 679, 909
BstMAI	GTCTC	2 cut(s)	95, 259
BstMBI	GATC	7 cut(s)	31, 69, 328, 364, 583, 676, 906
BstMWI	GCNNNNNNNGC	6 cut(s)	196, 380, 545, 788, 953, 962
BstSCI	CCNGG	2 cut(s)	208, 426
BstSFI	CTRYAG	1 cut(s)	835
BstSLI	GKGCMC	1 cut(s)	385
BstUI	CGCG	1 cut(s)	898
BstV1I	GCAGC	2 cut(s)	361, 482
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	246, 431, 903, 947
BtsCI	GGATG	2 cut(s)	204, 912
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	383, 816
Cac8I	GCNNGC	2 cut(s)	354, 938
CfoI	GCGC	2 cut(s)	43, 898
Cfr10I	RCCGGY	2 cut(s)	352, 388
Cfr13I	GGNCC	4 cut(s)	245, 402, 429, 766
CseI	GACGC	2 cut(s)	245, 284
Csp6I	GTAC	3 cut(s)	178, 497, 823
CviAII	CATG	5 cut(s)	410, 587, 709, 815, 888
CviQI	GTAC	3 cut(s)	178, 497, 823
DdeI	CTNAG	1 cut(s)	549
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	7 cut(s)	33, 71, 330, 366, 585, 678, 908
DpnII	GATC	7 cut(s)	31, 69, 328, 364, 583, 676, 906
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	903
Eco24I	GRGCYC	1 cut(s)	443
Eco47I	GGWCC	2 cut(s)	402, 766
Eco53kI	GAGCTC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	441
EcoNI	CCTNNNNNAGG	1 cut(s)	941
EcoO109I	RGGNCCY	2 cut(s)	402, 766
EcoT38I	GRGCYC	1 cut(s)	443
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	5 cut(s)	413, 590, 712, 818, 891
FaiI	YATR	8 cut(s)	411, 588, 675, 710, 746, 816, 889, 927
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	2 cut(s)	415, 752
FatI	CATG	5 cut(s)	409, 586, 708, 814, 887
FauI	CCCGC	3 cut(s)	256, 349, 787
FbaI	TGATCA	2 cut(s)	583, 906
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	5 cut(s)	191, 294, 375, 471, 492
FokI	GGATG	2 cut(s)	191, 899
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	5 cut(s)	191, 294, 375, 471, 492
FspBI	CTAG	3 cut(s)	170, 458, 540
GlaI	GCGC	2 cut(s)	42, 897
GluI	GCNGC	5 cut(s)	191, 294, 375, 471, 492
GsuI	CTGGAG	3 cut(s)	119, 495, 583
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	4 cut(s)	246, 431, 903, 947
HapII	CCGG	7 cut(s)	210, 225, 353, 389, 427, 444, 680
HgaI	GACGC	2 cut(s)	245, 284
HhaI	GCGC	2 cut(s)	43, 898
Hin1I	GRCGYC	2 cut(s)	41, 237
Hin1II	CATG	5 cut(s)	413, 590, 712, 818, 891
Hin6I	GCGC	2 cut(s)	41, 896
HinP1I	GCGC	2 cut(s)	41, 896
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	2 cut(s)	650, 1034
HinfI	GANTC	5 cut(s)	88, 103, 267, 596, 866
HpaII	CCGG	7 cut(s)	210, 225, 353, 389, 427, 444, 680
HphI	GGTGA	3 cut(s)	127, 416, 901
Hpy166II	GTNNAC	3 cut(s)	235, 383, 595
Hpy188I	TCNGA	5 cut(s)	52, 87, 165, 217, 266
Hpy188III	TCNNGA	6 cut(s)	73, 92, 619, 637, 860, 1007
Hpy8I	GTNNAC	3 cut(s)	235, 383, 595
Hpy99I	CGWCG	4 cut(s)	239, 245, 278, 326
HpyAV	CCTTC	7 cut(s)	70, 170, 298, 502, 547, 622, 706
HpyCH4III	ACNGT	2 cut(s)	811, 822
HpyCH4V	TGCA	6 cut(s)	18, 383, 395, 470, 559, 814
HpyF10VI	GCNNNNNNNGC	6 cut(s)	196, 380, 545, 788, 953, 962
HpyF3I	CTNAG	1 cut(s)	549
Hsp92I	GRCGYC	2 cut(s)	41, 237
Hsp92II	CATG	5 cut(s)	413, 590, 712, 818, 891
HspAI	GCGC	2 cut(s)	41, 896
KasI	GGCGCC	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	352
KroNI	GCCGGC	1 cut(s)	354
Ksp22I	TGATCA	2 cut(s)	583, 906
Kzo9I	GATC	7 cut(s)	31, 69, 328, 364, 583, 676, 906
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	6 cut(s)	218, 290, 308, 446, 518, 728
Lsp1109I	GCAGC	2 cut(s)	361, 482
MaeI	CTAG	3 cut(s)	170, 458, 540
MaeIII	GTNAC	2 cut(s)	333, 422
MalI	GATC	7 cut(s)	33, 71, 330, 366, 585, 678, 908
MboI	GATC	7 cut(s)	31, 69, 328, 364, 583, 676, 906
MboII	GAAGA	3 cut(s)	65, 410, 875
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	3 cut(s)	385, 443, 733
MluCI	AATT	4 cut(s)	23, 154, 433, 721
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	3 cut(s)	97, 276, 590
MmeI	TCCRAC	4 cut(s)	59, 463, 496, 664
MnlI	CCTC	7 cut(s)	204, 415, 470, 680, 757, 893, 937
MroNI	GCCGGC	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	632
MseI	TTAA	4 cut(s)	654, 798, 873, 1039
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	2 cut(s)	473, 854
MspI	CCGG	7 cut(s)	210, 225, 353, 389, 427, 444, 680
MspR9I	CCNGG	2 cut(s)	210, 428
MvnI	CGCG	1 cut(s)	898
MwoI	GCNNNNNNNGC	6 cut(s)	196, 380, 545, 788, 953, 962
NaeI	GCCGGC	1 cut(s)	354
NarI	GGCGCC	1 cut(s)	41
NciI	CCSGG	2 cut(s)	210, 428
NdeII	GATC	7 cut(s)	31, 69, 328, 364, 583, 676, 906
NgoMIV	GCCGGC	1 cut(s)	352
NlaIII	CATG	5 cut(s)	413, 590, 712, 818, 891
NlaIV	GGNNCC	8 cut(s)	33, 42, 214, 247, 304, 403, 520, 768
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	333, 422
OliI	CACNNNNGTG	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	903
PciSI	GCTCTTC	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	88, 866
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	192, 295, 376, 472, 493
PleI	GAGTC	3 cut(s)	97, 275, 590
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	3 cut(s)	97, 275, 590
PpuMI	RGGWCCY	2 cut(s)	402, 766
Psp124BI	GAGCTC	1 cut(s)	443
Psp5II	RGGWCCY	2 cut(s)	402, 766
PspN4I	GGNNCC	8 cut(s)	33, 42, 214, 247, 304, 403, 520, 768
PspPI	GGNCC	4 cut(s)	245, 402, 429, 766
PspPPI	RGGWCCY	2 cut(s)	402, 766
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	2 cut(s)	473, 854
RsaI	GTAC	3 cut(s)	179, 498, 824
RsaNI	GTAC	3 cut(s)	178, 497, 823
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	443
SalI	GTCGAC	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	654, 798, 873, 1039
SatI	GCNGC	5 cut(s)	191, 294, 375, 471, 492
Sau3AI	GATC	7 cut(s)	31, 69, 328, 364, 583, 676, 906
Sau96I	GGNCC	4 cut(s)	245, 402, 429, 766
SchI	GAGTC	3 cut(s)	97, 276, 590
ScrFI	CCNGG	2 cut(s)	210, 428
SduI	GDGCHC	3 cut(s)	385, 443, 733
SfcI	CTRYAG	1 cut(s)	835
SfoI	GGCGCC	1 cut(s)	42
SinI	GGWCC	2 cut(s)	402, 766
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	23, 154, 433, 721
SseBI	AGGCCT	1 cut(s)	903
SspDI	GGCGCC	1 cut(s)	40
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	3 cut(s)	170, 458, 540
SstI	GAGCTC	1 cut(s)	443
StuI	AGGCCT	1 cut(s)	903
StyD4I	CCNGG	2 cut(s)	208, 426
TaaI	ACNGT	2 cut(s)	811, 822
TaqI	TCGA	3 cut(s)	72, 234, 847
TasI	AATT	4 cut(s)	23, 154, 433, 721
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	3 cut(s)	193, 296, 494
TfiI	GAWTC	2 cut(s)	88, 866
Tru1I	TTAA	4 cut(s)	654, 798, 873, 1039
Tru9I	TTAA	4 cut(s)	654, 798, 873, 1039
TscAI	CASTG	2 cut(s)	390, 816
TseFI	GTSAC	2 cut(s)	333, 422
TseI	GCWGC	2 cut(s)	374, 470
Tsp45I	GTSAC	2 cut(s)	333, 422
TspDTI	ATGAA	4 cut(s)	193, 307, 725, 891
TspRI	CASTG	2 cut(s)	390, 816
Tth111I	GACNNNGTC	1 cut(s)	239
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	402, 766
XagI	CCTNNNNNAGG	1 cut(s)	941
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	3 cut(s)	170, 458, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.