Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008708.1

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Forward (+)

48615 .. 49332

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008708.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ctgcctctgcctttcatctccggctccgattactccgatgtcgtcgacgccgtcggcccgccatctacaagtttaaagtcggcgatgctgtttgatccgtcgctgccctcgggtccttttctcagttcatcgtcgtcgatcagtcacttctgtgagttctctgtcatatacacaatgttgataattacaatggagttgaatttgattgtggaaatttttggtgttggaaggtttggagtcccgaaagggtgtggtctggtggctgctggtgcactgccggttgcatttgagacctctcatgtggctcttcttcaccagtccaatttcagctttggtcaagtattgctggtgcttggtgcagctggaggtggtggacttgtgatgttgcagattggaaaggttgttggagccgttgttattgcagtagctaggggagctaagaaggtgcagtatttgaagtcattgatcatgtggtggactccagcattcaaagtattatccaaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

169

Amino Acids

17.66

Weight (kDa)

8.64

Isoelectric Point (pI)

23.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	199, 213
AcyI	GRCGYC	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	199, 457, 490
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	4 cut(s)	330, 362, 428, 437
AluI	AGCT	4 cut(s)	330, 362, 428, 437
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	284
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	55
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	3 cut(s)	103, 263, 359
ApoI	RAATTY	2 cut(s)	199, 213
AspS9I	GGNCC	2 cut(s)	56, 113
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	90, 250, 371
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	35, 395
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	3 cut(s)	104, 264, 360
BlsI	GCNGC	3 cut(s)	105, 265, 361
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	56, 113
BmiI	GGNNCC	3 cut(s)	25, 114, 409
BmsI	GCATC	1 cut(s)	75
BpmI	CTGGAG	2 cut(s)	384, 465
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	90, 250, 371
BsgI	GTGCAG	2 cut(s)	378, 467
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	21, 278
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	94, 138, 465
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	25, 114, 409
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	94, 138, 465
BssNI	GRCGYC	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	122, 438
BstKTI	GATC	3 cut(s)	97, 141, 468
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	3 cut(s)	94, 138, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 434
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	3 cut(s)	90, 250, 371
BsuRI	GGCC	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	56, 113
CseI	GACGC	1 cut(s)	56
CviAII	CATG	2 cut(s)	299, 469
CviJI	RGCY	9 cut(s)	24, 57, 263, 305, 330, 362, 410, 428, 437
CviKI_1	RGCY	9 cut(s)	24, 57, 263, 305, 330, 362, 410, 428, 437
DdeI	CTNAG	2 cut(s)	122, 438
DpnI	GATC	3 cut(s)	96, 140, 467
DpnII	GATC	3 cut(s)	94, 138, 465
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	113
FaeI	CATG	2 cut(s)	302, 472
FaiI	YATR	4 cut(s)	167, 169, 300, 470
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	298, 468
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	104, 264, 360
Fsp4HI	GCNGC	3 cut(s)	104, 264, 360
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	3 cut(s)	104, 264, 360
GsuI	CTGGAG	2 cut(s)	384, 465
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	2 cut(s)	21, 278
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	302, 472
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	237, 478
HpaII	CCGG	2 cut(s)	21, 278
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	4 cut(s)	46, 272, 374, 477
Hpy188I	TCNGA	2 cut(s)	28, 37
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	4 cut(s)	46, 272, 374, 477
Hpy99I	CGWCG	6 cut(s)	47, 50, 56, 103, 136, 139
HpyAV	CCTTC	2 cut(s)	222, 436
HpyCH4V	TGCA	6 cut(s)	272, 284, 359, 388, 422, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 434
HpyF3I	CTNAG	2 cut(s)	122, 438
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	302, 472
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	94, 138, 465
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	3 cut(s)	29, 407, 434
LpnPI	CCDG	8 cut(s)	34, 242, 252, 291, 329, 332, 348, 495
Lsp1109I	GCAGC	3 cut(s)	90, 250, 371
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	96, 140, 467
MboI	GATC	3 cut(s)	94, 138, 465
MboII	GAAGA	2 cut(s)	299, 302
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	4 cut(s)	183, 199, 213, 322
MlyI	GAGTC	2 cut(s)	246, 472
MmeI	TCCRAC	2 cut(s)	205, 385
MnlI	CCTC	4 cut(s)	15, 118, 304, 359
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	21, 278
Mva1269I	GAATGC	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	269, 434
NdeII	GATC	3 cut(s)	94, 138, 465
NlaIII	CATG	2 cut(s)	302, 472
NlaIV	GGNNCC	3 cut(s)	25, 114, 409
NmuCI	GTSAC	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	105, 265, 361
PleI	GAGTC	2 cut(s)	245, 472
PpsI	GAGTC	2 cut(s)	245, 472
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
PspN4I	GGNNCC	3 cut(s)	25, 114, 409
PspPI	GGNCC	2 cut(s)	56, 113
PspPPI	RGGWCCY	1 cut(s)	113
PsyI	GACNNNGTC	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	3 cut(s)	104, 264, 360
Sau3AI	GATC	3 cut(s)	94, 138, 465
Sau96I	GGNCC	2 cut(s)	56, 113
SchI	GAGTC	2 cut(s)	246, 472
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	9 cut(s)	233, 296, 332, 364, 370, 402, 430, 439, 447
SfaNI	GCATC	1 cut(s)	75
SgrDI	CGTCGACG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	183, 199, 213, 322
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	429
TaqI	TCGA	2 cut(s)	45, 137
TasI	AATT	4 cut(s)	183, 199, 213, 322
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	3 cut(s)	103, 263, 359
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	4, 117
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	279
Tth111I	GACNNNGTC	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	199, 213
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.