Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

30806349 .. 30808017

Gene Structure 1669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31541

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCGTCAACGCCGCCGTCTCCAAGTTTAAAGTCGGCGATGCTGTTTGCTCCGTCGCTGCCCTCGGGTCCTTTTCTCAGTTCATCGTCGTCGATCAGTGACTTCTGTGAGTTTGGAGCGAAAGGGTGTGGTCTGGTGGCTGCTGGTGCACTACCAGTTGCATTTGGGACCTCTCATGTGGCTCTTCTTCACCAGGCCAATTTCAGCTCTGGTCAAGTATTGTTGGTGCTCGGTGCAGCTGGAGGTGGTGGACTTGTGATGGTGCAGATTGGAAAGGTTGTTGAAGCCGTTGTTATTGCAGTAGCTAGGGGAGCTGAGAAGGTGCAGTATTTGAAGTCATTGATCATGTGGTGGACTCCAGCAGTCAAAGTATTATCCAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

128

Amino Acids

12.94

Weight (kDa)

9.39

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	284, 334
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	4 cut(s)	207, 239, 305, 314
AluI	AGCT	4 cut(s)	207, 239, 305, 314
Alw21I	GWGCWC	2 cut(s)	151, 231
Alw26I	GTCTC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	58, 140, 236
AspS9I	GGNCC	2 cut(s)	68, 168
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	68, 168
BaeGI	GKGCMC	1 cut(s)	151
Bbv12I	GWGCWC	2 cut(s)	151, 231
BbvI	GCAGC	3 cut(s)	45, 127, 248
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	4 cut(s)	14, 59, 141, 237
BlsI	GCNGC	4 cut(s)	15, 60, 142, 238
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	2 cut(s)	68, 168
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	68, 168
BmiI	GGNNCC	2 cut(s)	69, 169
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	261, 342
BsaJI	CCNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	91, 306
BseNI	ACTGG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	45, 127, 248
BsgI	GTGCAG	3 cut(s)	255, 284, 344
BshFI	GGCC	1 cut(s)	197
BsiHKAI	GWGCWC	2 cut(s)	151, 231
BsiHKCI	CYCGRG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	151, 231
Bsp143I	GATC	2 cut(s)	93, 342
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	90, 307
BspLI	GGNNCC	2 cut(s)	69, 169
BspQI	GCTCTTC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	93, 342
Bst2UI	CCWGG	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	77, 315
BstKTI	GATC	2 cut(s)	96, 345
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	93, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 311
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	45, 127, 248
BsuRI	GGCC	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	68, 168
CviAII	CATG	2 cut(s)	176, 346
CviJI	RGCY	8 cut(s)	140, 182, 197, 207, 239, 287, 305, 314
CviKI_1	RGCY	8 cut(s)	140, 182, 197, 207, 239, 287, 305, 314
DdeI	CTNAG	2 cut(s)	77, 315
DpnI	GATC	2 cut(s)	95, 344
DpnII	GATC	2 cut(s)	93, 342
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	68, 168
Eco88I	CYCGRG	1 cut(s)	64
EcoO109I	RGGNCCY	2 cut(s)	68, 168
EcoRII	CCWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	2 cut(s)	179, 349
FaiI	YATR	2 cut(s)	177, 347
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	175, 345
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	14, 59, 141, 237
Fsp4HI	GCNGC	4 cut(s)	14, 59, 141, 237
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	4 cut(s)	14, 59, 141, 237
GsuI	CTGGAG	2 cut(s)	261, 342
HaeIII	GGCC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	179, 349
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	4 cut(s)	9, 149, 251, 354
Hpy8I	GTNNAC	4 cut(s)	9, 149, 251, 354
Hpy99I	CGWCG	3 cut(s)	58, 91, 94
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	6 cut(s)	149, 161, 236, 265, 299, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 311
HpyF3I	CTNAG	2 cut(s)	77, 315
Hsp92II	CATG	2 cut(s)	179, 349
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	93, 342
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	3 cut(s)	55, 116, 311
LpnPI	CCDG	8 cut(s)	119, 129, 168, 179, 195, 206, 225, 372
Lsp1109I	GCAGC	3 cut(s)	45, 127, 248
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	2 cut(s)	95, 344
MboI	GATC	2 cut(s)	93, 342
MboII	GAAGA	2 cut(s)	176, 179
MhlI	GDGCHC	2 cut(s)	151, 231
MluCI	AATT	1 cut(s)	199
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	3 cut(s)	73, 181, 236
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	146, 311
NdeII	GATC	2 cut(s)	93, 342
NlaIII	CATG	2 cut(s)	179, 349
NlaIV	GGNNCC	2 cut(s)	69, 169
NmuCI	GTSAC	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	189
PkrI	GCNGC	4 cut(s)	15, 60, 142, 238
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PpuMI	RGGWCCY	2 cut(s)	68, 168
Psp5II	RGGWCCY	2 cut(s)	68, 168
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	69, 169
PspPI	GGNCC	2 cut(s)	68, 168
PspPPI	RGGWCCY	2 cut(s)	68, 168
PvuII	CAGCTG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	4 cut(s)	14, 59, 141, 237
Sau3AI	GATC	2 cut(s)	93, 342
Sau96I	GGNCC	2 cut(s)	68, 168
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	151, 231
SetI	ASST	8 cut(s)	173, 209, 241, 247, 279, 307, 316, 324
SfaNI	GCATC	1 cut(s)	30
SinI	GGWCC	2 cut(s)	68, 168
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	192
TaqI	TCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	199
TauI	GCSGC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	3 cut(s)	58, 140, 236
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	68, 168
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.