Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

30875226 .. 30877581

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCTTCGACGCCGTCGGCCCCGCCGTCTCCAAGTTTAAAGTCGGCGATGCTGTTTGCTCCGTCGCTGCCCTCAGGTCCTTTTCTCAGTTCATCGTCGTCGATCAGTCACTTCTGTGAGTTCTTTGCCATATACACAACATTGATAATTACAATTGAGTGGAATTTGATTGCGGAAATTTTTGGTGTTGGAAGGTTTGGAGTCCTGAAAGGGTGTGGTCTGGTGGCCGCTGGTGCACTACCGGTTGCATTTGTGACCTCTCATGTGGCTCTTCTTCACCAGGCCAATTTCAGCTCTGGTCAATTGAGTGAAACTGACTTAGAAAGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

110

Amino Acids

11.49

Weight (kDa)

5.14

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	23, 173, 228
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	163, 177
AcyI	GRCGYC	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	279
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	234
AoxI	GGCC	3 cut(s)	18, 225, 282
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	163, 177
AsiGI	ACCGGT	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	19, 77
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	68, 228
BlsI	GCNGC	2 cut(s)	69, 229
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	19, 77
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	87, 100
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	3 cut(s)	20, 227, 284
BshTI	ACCGGT	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	20, 227, 284
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	3 cut(s)	23, 173, 228
BspANI	GGCC	3 cut(s)	20, 227, 284
BspCNI	CTCAG	2 cut(s)	86, 99
BspLI	GGNNCC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	1 cut(s)	102
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	73, 86, 319
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	73
BsuRI	GGCC	3 cut(s)	20, 227, 284
BtgZI	GCGATG	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	19, 77
CseI	GACGC	1 cut(s)	19
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	5 cut(s)	20, 227, 269, 284, 294
CviKI_1	RGCY	5 cut(s)	20, 227, 269, 284, 294
DdeI	CTNAG	3 cut(s)	73, 86, 319
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
DraI	TTTAAA	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	77
Eco81I	CCTNAGG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	1 cut(s)	266
FaiI	YATR	3 cut(s)	131, 133, 264
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	68, 228
Fsp4HI	GCNGC	2 cut(s)	68, 228
GluI	GCNGC	2 cut(s)	68, 228
HaeIII	GGCC	3 cut(s)	20, 227, 284
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	5 cut(s)	13, 19, 67, 100, 103
HpyAV	CCTTC	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	236, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	73, 86, 319
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	102
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	8 cut(s)	60, 206, 216, 218, 255, 266, 282, 293
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	107, 253
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	2 cut(s)	263, 266
MfeI	CAATTG	2 cut(s)	153, 302
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	6 cut(s)	147, 153, 163, 177, 286, 302
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	2 cut(s)	82, 268
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	2 cut(s)	153, 302
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	107, 253
OliI	CACNNNNGTG	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	13
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	69, 229
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	19, 77
PspPPI	RGGWCCY	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	2 cut(s)	68, 228
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	2 cut(s)	19, 77
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	79, 197, 260, 296
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	6 cut(s)	147, 153, 163, 177, 286, 302
SsiI	CCGC	3 cut(s)	23, 173, 228
StyD4I	CCNGG	1 cut(s)	279
TaqI	TCGA	2 cut(s)	8, 101
TasI	AATT	6 cut(s)	147, 153, 163, 177, 286, 302
TauI	GCSGC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseFI	GTSAC	2 cut(s)	107, 253
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	2 cut(s)	107, 253
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	2 cut(s)	163, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.