Rorug01G0374100

Quinone oxidoreductase-like protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004349
Physical Location & Seq
Reverse (-)
48832926 .. 48834520
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0374100.1

Sequence Viewer

Length: 1371 bp
ATGGAGAGTAAGAACCACCACTTCCTTGTCATCTCCTCCAATGCACAAGGCCATATGAACCCTAGTCTCCAACTAGCTAAGCGGCTGATAGACATTGGAAGCTCACATGTCACCTTTGTCATTAACGTCCATGGCCTTGCCCAAATCAAATCCTTACCTTCTCTAGAAGGCTTATCATTTGCTTCGTTCTCCAATGGCTTTGACGATGGAGTCAAACCCGACAATGACCCAGACCACATCATGTCTGAGCTGAAGCGGGCGGGATCACAATCACTCACTGCTTTGATTGAGAAGATCTCCAAATCCGATGAGCATGGCCCTATCACCTTCTTAATCTACACCATCCTCCTCCCTTGGGCTGCTGAAGTTGCCAGTAGTTTTGGTATAGCTTCTGCGTATCTATGCATATTATCCACCACTTCATTTGCAATTTGCCACCATTACTTCAAAGATTACTATAAGAATCAGAGTAGCCTTCCATTTCCAAGTTCCATAACAATCGATGGTTTGCCACCTTTTGCTTCTGATGAGCTACCTTCCTATCTCCTACCCACCAGTCCACATGTTTCGATTCTCCCTACCTTGCAGGAACACTACCAAATCTTGGAACAGGATCCCAACTCTTGTGTGCTGCTTAACACCTTTGATGGGTTAGAGGAGGCAGCAATCAGAGATATGAGAAGTCATATGAATCTGATTACTGTTGGTCCCTTGATTCGTTCCAATGATGTTGAAGTTCGTTGCGACTTGTTTGACAAGTCTGGGGACGATTACCTTCAGTGGCTGGACTCAAAAGCAGATTCTTCTGTGGTTTATGCATCGTTTGGGAGCATGGTGGTGTTGTCGAGTGGTCAGATGGCAGAGATACTACATGGTTTGGTTGACAGTGGACTCCCAGTTCTATGGGTTATCCGCAAGTCAGGAAATGAAGGGGGTCAAGAAACTCAAAATCTGATAAACAATACACTAAAGAAGGAACAGGGGTTAATAGTGCCATGGTGTTCACAAGTAGAGGTGCTGAACCACAAGTCAGTTGGGTGTTTTGTGATGCATTGTGGGTGGAACTCTACTATAGAGAGCTTGGCAGCTGGTGTTCCGGTTGTCGGGTGCCCTCATTTTGCAGACCAGACTACAAATGCCAAGCTCGTGGAGGAGCTGTGGGGGACTGGAGTTAGAGCCAGAGCGAATGAAGAGGGAGTGATCGAGCGTGGCGAGATTAAGATGTGTTTGGAAGTGGTGATGGGGGATGGAGAGAGAGGGGAGGACATGAGAAGGAATGCTCAGAAATGGAAAGGTTTGGCTGTGAAGGCTGTGAAGGAAGGTGGTTCTTCGTATGATAATCTCAGGAACTTCGTCAGAAGGTTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

456

Amino Acids

50.05

Weight (kDa)

5.44

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 245 - 390 2.3e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 1107
AccB7I CCANNNNNTGG 1 cut(s) 604
AciI CCGC 4 cut(s) 82, 256, 260, 913
AclWI GGATC 3 cut(s) 271, 608, 621
AcuI CTGAAG 3 cut(s) 272, 384, 761
AfiI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
AflIII ACRYGT 2 cut(s) 106, 562
AgsI TTSAA 2 cut(s) 448, 734
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
AluBI AGCT 9 cut(s) 77, 102, 250, 389, 532, 1080, 1088, 1144, 1156
AluI AGCT 9 cut(s) 77, 102, 250, 389, 532, 1080, 1088, 1144, 1156
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 3 cut(s) 271, 608, 621
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 3 cut(s) 49, 133, 316
ApeKI GCWGC 4 cut(s) 359, 631, 662, 1085
AspS9I GGNCC 2 cut(s) 317, 707
AsuHPI GGTGA 3 cut(s) 103, 316, 1249
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 1112
BamHI GGATCC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 1107
BauI CACGAG 1 cut(s) 1145
BbvI GCAGC 4 cut(s) 346, 618, 674, 1097
BccI CCATC 7 cut(s) 200, 350, 497, 641, 850, 1234, 1241
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 63, 74, 164
BfmI CTRYAG 1 cut(s) 1071
BglII AGATCT 1 cut(s) 294
BisI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 5 cut(s) 84, 361, 633, 664, 1087
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 2 cut(s) 317, 707
BmiI GGNNCC 3 cut(s) 615, 709, 1109
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 2 cut(s) 827, 1038
BmuI ACTGGG 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 1188
Bpu1102I GCTNAGC 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 268
BsaJI CCNNGG 3 cut(s) 130, 353, 995
BsaWI WCCGGW 1 cut(s) 1096
BsaXI ACNNNNNCTCC 2 cut(s) 1142, 1172
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
Bse1I ACTGG 4 cut(s) 372, 555, 896, 1171
Bse8I GATNNNNATC 1 cut(s) 268
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 3 cut(s) 130, 353, 995
BseGI GGATG 2 cut(s) 342, 1252
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
BseMII CTCAG 3 cut(s) 237, 1295, 1357
BseNI ACTGG 4 cut(s) 372, 555, 896, 1171
BseRI GAGGAG 4 cut(s) 25, 338, 671, 1166
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 4 cut(s) 346, 618, 674, 1097
BshFI GGCC 3 cut(s) 51, 135, 318
BshNI GGYRCC 1 cut(s) 1107
BshVI ATCGAT 1 cut(s) 501
BsiSI CCGG 1 cut(s) 1097
BslFI GGGAC 3 cut(s) 693, 779, 1177
BslI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 3 cut(s) 693, 779, 1177
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 3 cut(s) 51, 135, 318
Bsp1286I GDGCHC 1 cut(s) 1112
Bsp143I GATC 4 cut(s) 263, 294, 613, 1200
Bsp1720I GCTNAGC 1 cut(s) 78
Bsp19I CCATGG 2 cut(s) 130, 995
BspACI CCGC 4 cut(s) 82, 256, 260, 913
BspANI GGCC 3 cut(s) 51, 135, 318
BspCNI CTCAG 3 cut(s) 238, 1294, 1356
BspDI ATCGAT 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 615, 709, 1109
BspPI GGATC 3 cut(s) 271, 608, 621
BspT107I GGYRCC 1 cut(s) 1107
BsrI ACTGG 4 cut(s) 372, 555, 896, 1171
BssECI CCNNGG 3 cut(s) 130, 353, 995
BssMI GATC 4 cut(s) 263, 294, 613, 1200
BssSI CACGAG 1 cut(s) 1145
BssT1I CCWWGG 3 cut(s) 130, 353, 995
Bst2BI CACGAG 1 cut(s) 1145
Bst4CI ACNGT 2 cut(s) 703, 887
Bst6I CTCTTC 1 cut(s) 1185
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 78, 246, 1281, 1343
BstDSI CCRYGG 2 cut(s) 130, 995
BstF5I GGATG 2 cut(s) 342, 1252
BstKTI GATC 4 cut(s) 266, 297, 616, 1203
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 4 cut(s) 263, 294, 613, 1200
BstMWI GCNNNNNNNGC 2 cut(s) 368, 1307
BstNSI RCATGY 2 cut(s) 110, 566
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 1112
BstV1I GCAGC 4 cut(s) 346, 618, 674, 1097
BstX2I RGATCY 2 cut(s) 294, 613
BstXI CCANNNNNNTGG 2 cut(s) 903, 1147
BstYI RGATCY 2 cut(s) 294, 613
Bsu15I ATCGAT 1 cut(s) 501
BsuRI GGCC 3 cut(s) 51, 135, 318
BsuTUI ATCGAT 1 cut(s) 501
BtgI CCRYGG 2 cut(s) 130, 995
BtsCI GGATG 2 cut(s) 342, 1252
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 276, 785, 892
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 784
Cfr13I GGNCC 2 cut(s) 317, 707
ClaI ATCGAT 1 cut(s) 501
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 9 cut(s) 107, 131, 241, 314, 563, 832, 872, 996, 1267
DdeI CTNAG 4 cut(s) 78, 246, 1281, 1343
DpnI GATC 4 cut(s) 265, 296, 615, 1202
DpnII GATC 4 cut(s) 263, 294, 613, 1200
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 1185
EarI CTCTTC 1 cut(s) 1185
Eco130I CCWWGG 3 cut(s) 130, 353, 995
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 3 cut(s) 272, 384, 761
EcoT14I CCWWGG 3 cut(s) 130, 353, 995
EcoT22I ATGCAT 3 cut(s) 407, 820, 1053
ErhI CCWWGG 3 cut(s) 130, 353, 995
FaeI CATG 9 cut(s) 110, 134, 244, 317, 566, 835, 875, 999, 1270
FaqI GGGAC 3 cut(s) 693, 779, 1177
FatI CATG 9 cut(s) 106, 130, 240, 313, 562, 831, 871, 995, 1266
FauI CCCGC 2 cut(s) 249, 253
FauNDI CATATG 2 cut(s) 54, 687
Fnu4HI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
FokI GGATG 2 cut(s) 329, 1259
Fsp4HI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
FspBI CTAG 3 cut(s) 63, 74, 164
GluI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
GsuI CTGGAG 1 cut(s) 1188
HaeIII GGCC 3 cut(s) 51, 135, 318
HapII CCGG 1 cut(s) 1097
Hin1II CATG 9 cut(s) 110, 134, 244, 317, 566, 835, 875, 999, 1270
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 8 cut(s) 210, 463, 571, 691, 715, 788, 800, 891
HpaII CCGG 1 cut(s) 1097
HphI GGTGA 3 cut(s) 103, 316, 1249
Hpy166II GTNNAC 4 cut(s) 560, 883, 890, 1004
Hpy188III TCNNGA 4 cut(s) 164, 921, 938, 1345
Hpy8I GTNNAC 4 cut(s) 560, 883, 890, 1004
HpyCH4III ACNGT 2 cut(s) 703, 887
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 7 cut(s) 44, 405, 428, 586, 818, 1051, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 1307
HpyF3I CTNAG 4 cut(s) 78, 246, 1281, 1343
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 9 cut(s) 110, 134, 244, 317, 566, 835, 875, 999, 1270
Kzo9I GATC 4 cut(s) 263, 294, 613, 1200
LmnI GCTCC 2 cut(s) 828, 1153
Lsp1109I GCAGC 4 cut(s) 346, 618, 674, 1097
LweI GCATC 2 cut(s) 827, 1038
MaeI CTAG 3 cut(s) 63, 74, 164
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 109
MalI GATC 4 cut(s) 265, 296, 615, 1202
MboI GATC 4 cut(s) 263, 294, 613, 1200
MboII GAAGA 4 cut(s) 304, 795, 1202, 1320
MflI RGATCY 2 cut(s) 294, 613
MhlI GDGCHC 1 cut(s) 1112
MluCI AATT 1 cut(s) 429
MlyI GAGTC 3 cut(s) 219, 782, 885
MmeI TCCRAC 1 cut(s) 94
Mph1103I ATGCAT 3 cut(s) 407, 820, 1053
MseI TTAA 5 cut(s) 123, 332, 636, 986, 1218
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 1 cut(s) 1088
MspI CCGG 1 cut(s) 1097
Mva1269I GAATGC 1 cut(s) 1282
MwoI GCNNNNNNNGC 2 cut(s) 368, 1307
NcoI CCATGG 2 cut(s) 130, 995
NdeI CATATG 2 cut(s) 54, 687
NdeII GATC 4 cut(s) 263, 294, 613, 1200
NlaIII CATG 9 cut(s) 110, 134, 244, 317, 566, 835, 875, 999, 1270
NlaIV GGNNCC 3 cut(s) 615, 709, 1109
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 3 cut(s) 407, 820, 1053
NspI RCATGY 2 cut(s) 110, 566
PciI ACATGT 2 cut(s) 106, 562
PcsI WCGNNNNNNNCGW 1 cut(s) 1209
PctI GAATGC 1 cut(s) 1282
PfeI GAWTC 5 cut(s) 463, 571, 691, 715, 800
PflMI CCANNNNNTGG 1 cut(s) 604
PkrI GCNGC 5 cut(s) 84, 361, 633, 664, 1087
PleI GAGTC 3 cut(s) 218, 782, 885
PpsI GAGTC 3 cut(s) 218, 782, 885
PscI ACATGT 2 cut(s) 106, 562
PspN4I GGNNCC 3 cut(s) 615, 709, 1109
PspPI GGNCC 2 cut(s) 317, 707
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 2 cut(s) 294, 613
PvuII CAGCTG 1 cut(s) 1088
RseI CAYNNNNRTG 1 cut(s) 836
SaqAI TTAA 5 cut(s) 123, 332, 636, 986, 1218
SatI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
Sau3AI GATC 4 cut(s) 263, 294, 613, 1200
Sau96I GGNCC 2 cut(s) 317, 707
SchI GAGTC 3 cut(s) 219, 782, 885
SduI GDGCHC 1 cut(s) 1112
SfaNI GCATC 2 cut(s) 827, 1038
SfcI CTRYAG 1 cut(s) 1071
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 1 cut(s) 836
Sse9I AATT 1 cut(s) 429
SsiI CCGC 4 cut(s) 82, 256, 260, 913
SspMI CTAG 3 cut(s) 63, 74, 164
StyI CCWWGG 3 cut(s) 130, 353, 995
TaaI ACNGT 2 cut(s) 703, 887
TaiI ACGT 1 cut(s) 129
TaqI TCGA 4 cut(s) 501, 569, 845, 1203
TasI AATT 1 cut(s) 429
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 5 cut(s) 463, 571, 691, 715, 800
Tru1I TTAA 5 cut(s) 123, 332, 636, 986, 1218
Tru9I TTAA 5 cut(s) 123, 332, 636, 986, 1218
TscAI CASTG 3 cut(s) 283, 785, 892
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 4 cut(s) 359, 631, 662, 1085
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 5 cut(s) 71, 411, 704, 942, 1203
TspRI CASTG 3 cut(s) 283, 785, 892
Van91I CCANNNNNTGG 1 cut(s) 604
VpaK11BI GGWCC 1 cut(s) 707
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 110, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 1031
XspI CTAG 3 cut(s) 63, 74, 164
Zsp2I ATGCAT 3 cut(s) 407, 820, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.