Rh2AG155100

Quinone oxidoreductase-like protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004349
Physical Location & Seq
Reverse (-)
14368805 .. 14370568
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG155100.1

Sequence Viewer

Length: 549 bp
ATGGGTTCCGGGTTCGATTTCAGATTTCCAGTTGATCTTGATGGTATAATTGCAAATGGATTTCCAGTTGATCTTTATGAAGAGAAAGCAATAGTGATCAAGAAGAGTTATCTGATTCCTGAACTGGAGACTCCCACATCGGTGAGAGTAAGAGTGAAAGCTACGAGCTTAAACTACGCCAATTACCTTCATATACTTGGCAAGTACCAAGAGAAGCCACCTCTGCCTTTCATCTTCGGCTTCGATTACTCCGGCGTTGTCGATGCCGTCGGCCCCGCCGTCTCCAAGTTTAAAGTCAGCGATGCTGTTTGCTCAGTCACCGCCCTCGGGTCCTTTTCTCAATTCATCGTCGTCGATCAGTCACTTCTGTTTGGAGTGTCAGAAGGGTGTGGTCTAGTGGCTGCTAGTGCACTGCTGGTTGCATTTGGGACCTCTCATGTATTGTTGGTGCTTGGTGCAGCTGGAGGTGGTGGACTTGCGGCGATGCAAATTGGAAAGGTTGTTGGAGCCGTTGTTATTGCAGTAGCTAGGGGAGCTGAGAAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

182

Amino Acids

18.96

Weight (kDa)

6.09

Isoelectric Point (pI)

19.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 45 - 124 2e-12 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 276, 321, 479
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 5 cut(s) 161, 168, 461, 527, 536
AluI AGCT 5 cut(s) 161, 168, 461, 527, 536
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 2 cut(s) 122, 286
Alw44I GTGCAC 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 1 cut(s) 271
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 401, 458
AspS9I GGNCC 3 cut(s) 272, 330, 429
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 154, 310
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 2 cut(s) 330, 429
BaeGI GKGCMC 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 2 cut(s) 388, 470
BccI CCATC 1 cut(s) 35
BceAI ACGGC 3 cut(s) 251, 263, 494
BclI TGATCA 1 cut(s) 96
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 122, 286
BfaI CTAG 3 cut(s) 395, 405, 528
BisI GCNGC 3 cut(s) 402, 459, 480
BlsI GCNGC 3 cut(s) 403, 460, 481
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 2 cut(s) 330, 429
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 3 cut(s) 272, 330, 429
BmiI GGNNCC 5 cut(s) 7, 274, 331, 430, 508
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 3 cut(s) 253, 292, 474
BpmI CTGGAG 2 cut(s) 146, 483
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 3 cut(s) 29, 65, 129
BseDI CCNNGG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 327, 528
BseNI ACTGG 3 cut(s) 29, 65, 129
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 2 cut(s) 388, 470
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 2 cut(s) 9, 252
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 122, 286
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 4 cut(s) 34, 70, 96, 355
BspACI CCGC 3 cut(s) 276, 321, 479
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 2 cut(s) 326, 529
BspLI GGNNCC 5 cut(s) 7, 274, 331, 430, 508
BsrI ACTGG 3 cut(s) 29, 65, 129
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 4 cut(s) 34, 70, 96, 355
Bst6I CTCTTC 2 cut(s) 75, 98
BstDEI CTNAG 2 cut(s) 313, 537
BstKTI GATC 4 cut(s) 37, 73, 99, 358
BstMAI GTCTC 2 cut(s) 122, 286
BstMBI GATC 4 cut(s) 34, 70, 96, 355
BstMWI GCNNNNNNNGC 3 cut(s) 223, 407, 533
BstSCI CCNGG 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 388, 470
BsuRI GGCC 1 cut(s) 273
BtgZI GCGATG 2 cut(s) 315, 497
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 272, 330, 429
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 437
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 313, 537
DpnI GATC 4 cut(s) 36, 72, 98, 357
DpnII GATC 4 cut(s) 34, 70, 96, 355
DraI TTTAAA 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 75, 98
EarI CTCTTC 2 cut(s) 75, 98
Eco47I GGWCC 2 cut(s) 330, 429
Eco88I CYCGRG 1 cut(s) 326
EcoO109I RGGNCCY 2 cut(s) 330, 429
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 1 cut(s) 440
FaiI YATR 5 cut(s) 47, 78, 192, 194, 438
FaqI GGGAC 1 cut(s) 442
FatI CATG 1 cut(s) 436
FauI CCCGC 1 cut(s) 283
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 402, 459, 480
Fsp4HI GCNGC 3 cut(s) 402, 459, 480
FspBI CTAG 3 cut(s) 395, 405, 528
GluI GCNGC 3 cut(s) 402, 459, 480
GsuI CTGGAG 2 cut(s) 146, 483
HaeIII GGCC 1 cut(s) 273
HapII CCGG 2 cut(s) 9, 252
Hin1II CATG 1 cut(s) 440
HinfI GANTC 2 cut(s) 115, 130
HpaII CCGG 2 cut(s) 9, 252
HphI GGTGA 2 cut(s) 154, 310
Hpy166II GTNNAC 2 cut(s) 410, 473
Hpy188I TCNGA 3 cut(s) 23, 114, 382
Hpy188III TCNNGA 3 cut(s) 38, 100, 119
Hpy8I GTNNAC 2 cut(s) 410, 473
Hpy99I CGWCG 3 cut(s) 272, 353, 356
HpyAV CCTTC 3 cut(s) 197, 377, 535
HpyCH4V TGCA 6 cut(s) 53, 410, 422, 458, 487, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 407, 533
HpyF3I CTNAG 2 cut(s) 313, 537
Hsp92II CATG 1 cut(s) 440
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 4 cut(s) 34, 70, 96, 355
LmnI GCTCC 2 cut(s) 506, 533
LpnPI CCDG 8 cut(s) 22, 42, 78, 110, 132, 265, 401, 447
Lsp1109I GCAGC 2 cut(s) 388, 470
LweI GCATC 3 cut(s) 253, 292, 474
MaeI CTAG 3 cut(s) 395, 405, 528
MaeIII GTNAC 2 cut(s) 316, 360
MalI GATC 4 cut(s) 36, 72, 98, 357
MboI GATC 4 cut(s) 34, 70, 96, 355
MboII GAAGA 3 cut(s) 92, 115, 226
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 4 cut(s) 48, 181, 341, 489
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 4 cut(s) 231, 335, 442, 458
MseI TTAA 2 cut(s) 170, 291
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 9, 252
MspR9I CCNGG 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 223, 407, 533
NciI CCSGG 1 cut(s) 10
NdeII GATC 4 cut(s) 34, 70, 96, 355
NlaIII CATG 1 cut(s) 440
NlaIV GGNNCC 5 cut(s) 7, 274, 331, 430, 508
NmuCI GTSAC 2 cut(s) 316, 360
OliI CACNNNNGTG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 403, 460, 481
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PpuMI RGGWCCY 2 cut(s) 330, 429
Psp5II RGGWCCY 2 cut(s) 330, 429
PspN4I GGNNCC 5 cut(s) 7, 274, 331, 430, 508
PspPI GGNCC 3 cut(s) 272, 330, 429
PspPPI RGGWCCY 2 cut(s) 330, 429
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 170, 291
SatI GCNGC 3 cut(s) 402, 459, 480
Sau3AI GATC 4 cut(s) 34, 70, 96, 355
Sau96I GGNCC 3 cut(s) 272, 330, 429
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 3 cut(s) 253, 292, 474
SinI GGWCC 2 cut(s) 330, 429
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 4 cut(s) 48, 181, 341, 489
SsiI CCGC 3 cut(s) 276, 321, 479
SspMI CTAG 3 cut(s) 395, 405, 528
StyD4I CCNGG 1 cut(s) 8
TaqI TCGA 4 cut(s) 15, 243, 261, 354
TasI AATT 4 cut(s) 48, 181, 341, 489
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 170, 291
Tru9I TTAA 2 cut(s) 170, 291
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 316, 360
TseI GCWGC 2 cut(s) 401, 458
Tsp45I GTSAC 2 cut(s) 316, 360
TspDTI ATGAA 4 cut(s) 93, 179, 220, 334
TspRI CASTG 1 cut(s) 417
VneI GTGCAC 1 cut(s) 408
VpaK11BI GGWCC 2 cut(s) 330, 429
XspI CTAG 3 cut(s) 395, 405, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.