Rh2DG160700

Quinone oxidoreductase-like protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004349
Physical Location & Seq
Reverse (-)
13684342 .. 13695380
11039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG160700.1

Sequence Viewer

Length: 546 bp
ATGGTGAGGAAAATTATGGAGGACAAAGAAGGTTTTGCATTGAGAGATAGAGCTAAGAATCTTAAATTCAGTGGTGCAAACGCTTTGGAACAAGGTGAAGAGAAAGCAATAGTGATCAAGAAGAGTTATCTGATTCCTGAACTGGAGACTCCCACATCGGTGAGAGTAAGAGTGAAAGCTACGAGCTTAAACTACGCCAATTACCTTCATATACTTGGCAAGTACCAAGAGAAGCCACCTCTGCCTTTCATCTTCGGCTTCGATTACTCCGGCGTTGTCGATGCCGTCGGCCCCGCCGTCTCCAAGTTTAAAGTCAGCGATGCTGTTTGCTCAGTCACCGCCCTCGGGTCCTTTTCTCAATTCATCGTCGTCGATCAGTCACTTCTGTTTGGAGTGTCAGAAGGGTGTGGTCTAGTGGCTGCTAGTGCACTGCTGGTATTGTTGGTGCTTGGTGCAGCTGGAGGTGGTGGACTTGCGGCGATGCAAATTGGAAAGGTTGTTGGAGCCGTTGTTATTGCAGTAGCTAGGGGAGCTGAGAAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

181

Amino Acids

19.02

Weight (kDa)

9.06

Isoelectric Point (pI)

19.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 51 - 130 2e-12 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 294, 339, 476
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 345
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 6 cut(s) 53, 179, 186, 458, 524, 533
AluI AGCT 6 cut(s) 53, 179, 186, 458, 524, 533
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 140, 304
Alw44I GTGCAC 1 cut(s) 426
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 1 cut(s) 289
ApaLI GTGCAC 1 cut(s) 426
ApeKI GCWGC 2 cut(s) 419, 455
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 290, 348
AsuHPI GGTGA 4 cut(s) 16, 107, 172, 328
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 406, 467
BceAI ACGGC 3 cut(s) 269, 281, 491
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 140, 304
BfaI CTAG 3 cut(s) 413, 423, 525
BisI GCNGC 3 cut(s) 420, 456, 477
BlsI GCNGC 3 cut(s) 421, 457, 478
Bme18I GGWCC 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 290, 348
BmiI GGNNCC 3 cut(s) 292, 349, 505
BmsI GCATC 3 cut(s) 271, 310, 471
BpmI CTGGAG 2 cut(s) 164, 480
BsaJI CCNNGG 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 345, 525
BseNI ACTGG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 2 cut(s) 406, 467
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 140, 304
BsmBI CGTCTC 1 cut(s) 304
BsnI GGCC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 114, 373
BspACI CCGC 3 cut(s) 294, 339, 476
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 2 cut(s) 344, 526
BspLI GGNNCC 3 cut(s) 292, 349, 505
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 2 cut(s) 114, 373
Bst6I CTCTTC 2 cut(s) 93, 116
BstDEI CTNAG 3 cut(s) 54, 331, 534
BstKTI GATC 2 cut(s) 117, 376
BstMAI GTCTC 2 cut(s) 140, 304
BstMBI GATC 2 cut(s) 114, 373
BstMWI GCNNNNNNNGC 3 cut(s) 241, 425, 530
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 406, 467
BsuRI GGCC 1 cut(s) 291
BtgZI GCGATG 2 cut(s) 333, 494
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 2 cut(s) 76, 428
Cfr13I GGNCC 2 cut(s) 290, 348
Csp6I GTAC 1 cut(s) 223
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 3 cut(s) 54, 331, 534
DpnI GATC 2 cut(s) 116, 375
DpnII GATC 2 cut(s) 114, 373
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 93, 116
EarI CTCTTC 2 cut(s) 93, 116
Eco47I GGWCC 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 304
FaiI YATR 3 cut(s) 17, 210, 212
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 420, 456, 477
Fsp4HI GCNGC 3 cut(s) 420, 456, 477
FspBI CTAG 3 cut(s) 413, 423, 525
GluI GCNGC 3 cut(s) 420, 456, 477
GsuI CTGGAG 2 cut(s) 164, 480
HaeIII GGCC 1 cut(s) 291
HapII CCGG 1 cut(s) 270
HinfI GANTC 3 cut(s) 58, 133, 148
HpaII CCGG 1 cut(s) 270
HphI GGTGA 4 cut(s) 16, 107, 172, 328
Hpy166II GTNNAC 2 cut(s) 428, 470
Hpy188I TCNGA 2 cut(s) 132, 400
Hpy188III TCNNGA 2 cut(s) 118, 137
Hpy8I GTNNAC 2 cut(s) 428, 470
Hpy99I CGWCG 3 cut(s) 290, 371, 374
HpyAV CCTTC 4 cut(s) 23, 215, 395, 532
HpyCH4V TGCA 6 cut(s) 38, 77, 428, 455, 484, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 425, 530
HpyF3I CTNAG 3 cut(s) 54, 331, 534
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 2 cut(s) 114, 373
LmnI GCTCC 2 cut(s) 503, 530
LpnPI CCDG 5 cut(s) 128, 150, 283, 419, 444
Lsp1109I GCAGC 2 cut(s) 406, 467
LweI GCATC 3 cut(s) 271, 310, 471
MaeI CTAG 3 cut(s) 413, 423, 525
MaeIII GTNAC 2 cut(s) 334, 378
MalI GATC 2 cut(s) 116, 375
MboI GATC 2 cut(s) 114, 373
MboII GAAGA 3 cut(s) 110, 133, 244
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 5 cut(s) 12, 65, 199, 359, 486
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 4 cut(s) 13, 249, 353, 455
MseI TTAA 3 cut(s) 63, 188, 309
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 241, 425, 530
NdeII GATC 2 cut(s) 114, 373
NlaIV GGNNCC 3 cut(s) 292, 349, 505
NmuCI GTSAC 2 cut(s) 334, 378
OliI CACNNNNGTG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PfeI GAWTC 2 cut(s) 58, 133
PkrI GCNGC 3 cut(s) 421, 457, 478
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 292, 349, 505
PspPI GGNCC 2 cut(s) 290, 348
PspPPI RGGWCCY 1 cut(s) 348
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 3 cut(s) 63, 188, 309
SatI GCNGC 3 cut(s) 420, 456, 477
Sau3AI GATC 2 cut(s) 114, 373
Sau96I GGNCC 2 cut(s) 290, 348
SchI GAGTC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 3 cut(s) 271, 310, 471
SinI GGWCC 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 5 cut(s) 12, 65, 199, 359, 486
SsiI CCGC 3 cut(s) 294, 339, 476
SspMI CTAG 3 cut(s) 413, 423, 525
TaqI TCGA 3 cut(s) 261, 279, 372
TasI AATT 5 cut(s) 12, 65, 199, 359, 486
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 2 cut(s) 58, 133
Tru1I TTAA 3 cut(s) 63, 188, 309
Tru9I TTAA 3 cut(s) 63, 188, 309
TscAI CASTG 2 cut(s) 76, 435
TseFI GTSAC 2 cut(s) 334, 378
TseI GCWGC 2 cut(s) 419, 455
Tsp45I GTSAC 2 cut(s) 334, 378
TspDTI ATGAA 3 cut(s) 197, 238, 352
TspRI CASTG 2 cut(s) 76, 435
VneI GTGCAC 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 348
XapI RAATTY 1 cut(s) 65
XspI CTAG 3 cut(s) 413, 423, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.