Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Forward (+)

13015951 .. 13017148

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1140100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACTCAGAACTTACCAGAACCCCACCCGAGGCTGACGACGATTGAGGCTCTGGTGTGCCGGAAATTGGGCGACCCGACACAACCCATATCAGACGGAGATGCGGAGAAAGCGATCATTGTGGAGAAGAACCACCCAATTCTAGAATTGGGTTCTCCGACATCGGTAAGAGTGAAAGTGAAAGCTACGAGCTTGAACTACACCAATTATCTGCAGATATTGGGCAAGTACCAGGAGAAGCTGCCCCTCCCTTTCATACCAGGCTCCGACTACTTCGGGACCGTCGACGCCGTTAGACTTGCCGTATCCAAGTTCAAATTTGACGACCTTGTTTGCTCTGTTGCCGCCCTCGGCTCTTTCACCCAATTCATCGTCGCCGATCAGGAAGAGCTGTTTGGAGTGCCGGAAATGTGTGATTTGGTGGCTGCCGGTGCACTGCCTTTTGCATTTGGGACCTCGCACGTGGCACTTGTTCATAGGGCCAATTTATCCTCCAGTCAAGTATTGCTGGTTCTTGGTACAGCTGGAGGAGTTGGCCTTGCGGCCATACAGATTGGCAAGGTTGTGGGAGCCATTGTTATCGCCGTAGTTAGGGGAGCTGAAAAGGTGAAGTATTTGAAGCAATTGGGGGTTGATCATGTGGTGGACTTAAGCAGCGAAAATGTTATCCTAAGTGTGAAGGATTTCTTGAAATCCCGAAAGCTTAAAGGGGTTGATGTTTTGTATGATCCGATTGGAGGCAAGCTTACGAAAGAGGCCATGAAGGTTATGAGTTGGGGAGCCAACATCTTGGTCATAGGTTTTGCAAGTGGAGAGGTGATAGGAGCATATTTATGCAACTCAGTTAGCTCGTTCAAACATCGTGTTGCTACGCCTTGTCCCCTTTATGCGTGCGTAGAAGAAGAGTCGGCATTAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

308

Amino Acids

32.82

Weight (kDa)

7.0

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	53 - 135	3.8e-10	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	177 - 274	9.7e-17	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	3 cut(s)	104, 345, 542
AclWI	GGATC	1 cut(s)	722
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	317
AcvI	CACGTG	1 cut(s)	463
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	230, 520
AfiI	CCNNNNNNNGG	4 cut(s)	30, 67, 591, 737
AflII	CTTAAG	1 cut(s)	649
AgsI	TTSAA	5 cut(s)	196, 316, 619, 691, 856
AjnI	CCWGG	2 cut(s)	231, 259
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	9 cut(s)	185, 192, 241, 391, 524, 599, 703, 745, 849
AluI	AGCT	9 cut(s)	185, 192, 241, 391, 524, 599, 703, 745, 849
Alw21I	GWGCWC	1 cut(s)	436
Alw44I	GTGCAC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	4 cut(s)	480, 535, 543, 756
ApaLI	GTGCAC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	241, 425, 654
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	279, 453, 480
AsuHPI	GGTGA	3 cut(s)	352, 619, 829
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	279, 453
BaeGI	GKGCMC	1 cut(s)	436
BbrPI	CACGTG	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	228, 412, 666
BceAI	ACGGC	3 cut(s)	275, 287, 569
BciT130I	CCWGG	2 cut(s)	233, 261
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	634
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	649
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	5 cut(s)	242, 345, 426, 543, 655
BlsI	GCNGC	5 cut(s)	243, 346, 427, 544, 656
Bme1390I	CCNGG	2 cut(s)	233, 261
Bme18I	GGWCC	2 cut(s)	279, 453
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	3 cut(s)	279, 453, 480
BmiI	GGNNCC	5 cut(s)	265, 280, 454, 571, 781
BmrFI	CCNGG	2 cut(s)	233, 261
BmsI	GCATC	1 cut(s)	91
BpmI	CTGGAG	2 cut(s)	478, 546
BsaAI	YACGTR	1 cut(s)	463
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	29, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 67, 591, 737
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	233, 261
BseDI	CCNNGG	2 cut(s)	29, 349
BseLI	CCNNNNNNNGG	4 cut(s)	30, 67, 591, 737
BseMII	CTCAG	2 cut(s)	20, 855
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	543
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	228, 412, 666
BshFI	GGCC	4 cut(s)	482, 537, 545, 758
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	61, 404, 429
BslFI	GGGAC	3 cut(s)	292, 466, 864
BslI	CCNNNNNNNGG	4 cut(s)	30, 67, 591, 737
BsmFI	GGGAC	3 cut(s)	292, 466, 864
BsnI	GGCC	4 cut(s)	482, 537, 545, 758
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	114, 379, 634, 727
BspACI	CCGC	3 cut(s)	104, 345, 542
BspANI	GGCC	4 cut(s)	482, 537, 545, 758
BspCNI	CTCAG	2 cut(s)	19, 854
BspLI	GGNNCC	5 cut(s)	265, 280, 454, 571, 781
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	1 cut(s)	722
BspQI	GCTCTTC	1 cut(s)	381
BspTI	CTTAAG	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	29, 349
BssMI	GATC	4 cut(s)	114, 379, 634, 727
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	233, 261
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	381, 897
BstACI	GRCGYC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	649
BstBAI	YACGTR	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	743, 892
BstDEI	CTNAG	3 cut(s)	6, 671, 841
BstKTI	GATC	4 cut(s)	117, 382, 637, 730
BstMBI	GATC	4 cut(s)	114, 379, 634, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 431
BstNI	CCWGG	2 cut(s)	233, 261
BstSCI	CCNGG	2 cut(s)	231, 259
BstSFI	CTRYAG	1 cut(s)	212
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	3 cut(s)	228, 412, 666
BstXI	CCANNNNNNTGG	1 cut(s)	790
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	482, 537, 545, 758
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	2 cut(s)	743, 892
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	3 cut(s)	279, 453, 480
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	229, 519
CviAII	CATG	2 cut(s)	638, 760
CviQI	GTAC	2 cut(s)	229, 519
DdeI	CTNAG	3 cut(s)	6, 671, 841
DpnI	GATC	4 cut(s)	116, 381, 636, 729
DpnII	GATC	4 cut(s)	114, 379, 634, 727
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	2 cut(s)	381, 897
EarI	CTCTTC	2 cut(s)	381, 897
Eco47I	GGWCC	2 cut(s)	279, 453
Eco72I	CACGTG	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	231, 259
FaeI	CATG	2 cut(s)	641, 763
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FaqI	GGGAC	3 cut(s)	292, 466, 864
FatI	CATG	2 cut(s)	637, 759
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	242, 345, 426, 543, 655
Fsp4HI	GCNGC	5 cut(s)	242, 345, 426, 543, 655
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	5 cut(s)	242, 345, 426, 543, 655
GsuI	CTGGAG	2 cut(s)	478, 546
HaeIII	GGCC	4 cut(s)	482, 537, 545, 758
HapII	CCGG	3 cut(s)	61, 404, 429
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	641, 763
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	2 cut(s)	701, 743
HinfI	GANTC	2 cut(s)	4, 905
HpaII	CCGG	3 cut(s)	61, 404, 429
HphI	GGTGA	3 cut(s)	352, 619, 829
Hpy166II	GTNNAC	3 cut(s)	286, 434, 646
Hpy188I	TCNGA	5 cut(s)	9, 94, 159, 268, 732
Hpy188III	TCNNGA	5 cut(s)	143, 277, 383, 688, 696
Hpy8I	GTNNAC	3 cut(s)	286, 434, 646
Hpy99I	CGWCG	4 cut(s)	43, 287, 290, 377
HpyAV	CCTTC	2 cut(s)	673, 757
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	5 cut(s)	214, 434, 446, 806, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 431
HpyF3I	CTNAG	3 cut(s)	6, 671, 841
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	641, 763
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	114, 379, 634, 727
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	5 cut(s)	269, 569, 596, 779, 824
Lsp1109I	GCAGC	3 cut(s)	228, 412, 666
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	462
MalI	GATC	4 cut(s)	116, 381, 636, 729
MboI	GATC	4 cut(s)	114, 379, 634, 727
MboII	GAAGA	4 cut(s)	139, 398, 911, 914
MfeI	CAATTG	1 cut(s)	623
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	8 cut(s)	65, 138, 146, 205, 317, 365, 484, 623
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	2 cut(s)	182, 291
MroXI	GAANNNNTTC	1 cut(s)	683
MseI	TTAA	3 cut(s)	650, 705, 914
MslI	CAYNNNNRTG	1 cut(s)	832
MspA1I	CMGCKG	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	649
MspI	CCGG	3 cut(s)	61, 404, 429
MspR9I	CCNGG	2 cut(s)	233, 261
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	2 cut(s)	233, 261
MwoI	GCNNNNNNNGC	2 cut(s)	110, 431
NdeII	GATC	4 cut(s)	114, 379, 634, 727
NlaIII	CATG	2 cut(s)	641, 763
NlaIV	GGNNCC	5 cut(s)	265, 280, 454, 571, 781
NmeAIII	GCCGAG	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	683
PkrI	GCNGC	5 cut(s)	243, 346, 427, 544, 656
PleI	GAGTC	1 cut(s)	913
PmaCI	CACGTG	1 cut(s)	463
PmlI	CACGTG	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	913
Ppu21I	YACGTR	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	231, 259
PspCI	CACGTG	1 cut(s)	463
PspGI	CCWGG	2 cut(s)	231, 259
PspN4I	GGNNCC	5 cut(s)	265, 280, 454, 571, 781
PspPI	GGNCC	3 cut(s)	279, 453, 480
PspPPI	RGGWCCY	1 cut(s)	453
PsrI	GAACNNNNNNTAC	2 cut(s)	495, 527
PstI	CTGCAG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	2 cut(s)	230, 520
RsaNI	GTAC	2 cut(s)	229, 519
RseI	CAYNNNNRTG	1 cut(s)	832
SalI	GTCGAC	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	650, 705, 914
SatI	GCNGC	5 cut(s)	242, 345, 426, 543, 655
Sau3AI	GATC	4 cut(s)	114, 379, 634, 727
Sau96I	GGNCC	3 cut(s)	279, 453, 480
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	2 cut(s)	233, 261
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	212
SgrDI	CGTCGACG	1 cut(s)	284
SinI	GGWCC	2 cut(s)	279, 453
SmiMI	CAYNNNNRTG	1 cut(s)	832
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
Sse9I	AATT	8 cut(s)	65, 138, 146, 205, 317, 365, 484, 623
SsiI	CCGC	3 cut(s)	104, 345, 542
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	231, 259
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	285
TasI	AATT	8 cut(s)	65, 138, 146, 205, 317, 365, 484, 623
TauI	GCSGC	2 cut(s)	347, 545
Tru1I	TTAA	3 cut(s)	650, 705, 914
Tru9I	TTAA	3 cut(s)	650, 705, 914
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	3 cut(s)	241, 425, 654
TspDTI	ATGAA	4 cut(s)	244, 358, 464, 776
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	441
Vha464I	CTTAAG	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	279, 453
XapI	RAATTY	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.