Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

61685517 .. 61687720

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGGCTTTGGTGTGCAAGAAATTGGGGGATCCAACGACGCCGATTTCAGAAGAGAAAGCAATAGTGATCGAGAAGAGTTATCCGATTCCTGAACTGGAGACTCCCACATCGGTGAGAGTGAGAGTGAAAGCCACGAGCTTGAACTACGCCAATTACCTTCAGATACTTGTCGACGCCGTCGGCCCCGCCGTCTCCAAGTTCAGAGTCGGCGACGCTGTTTGCTCCTTCGCCGCACTCGGCTCCTTTGCCCAGTTCATCGTCGCCGATCAGTCACTTCTGTTTGGAGTGCCGGAGGGGTGTGATCTGGTGGCCGCTGGTGCACTGCCGGTTGCATTTGGGACCTCTCATGTGGCTCTTCGTCACCGGGCCGATTTGAGCTCCGGTCAAGTATTGCTAGTGCTTGGTGCAGCTGGAGGTGTTGGACTTGCGGCGGTACAGATTGGGAAGGTTGTTGGAGCCGTTGTTATTGCGGTAGCTAGGGGAGCTGAGAAGGTGCAGTATTTGAAGTCGTTGGGGGTTGATCATGTGGTGGACTCCAGCAGTCAAAGTATTATCCAGAGTGTGAAGGACTTCTTGAAAACCAGAAAGCTTAAAGGGGTTGATGTTTTGTATGATCCGGTTGGAGGGAAACTTACTAAAGAAGCCATGAAGGTATTGAATTGGGGAGCACAGATTTTGGTTATAGGCTTTGCGAGTGGAGAGGTCCCTGTCATTCCCGCCAATATTGCTCTTGTTAAGAACTGGACAGTGCATGGACTGTACTGGGGTAGCTACAGAATACATCGACCAGCTGTTCTTGAAGATTCAGTTAATGAACTACTATCATGGGTGGCGCGAGGCCTGATCACCATCCACATTTCTCATACTTACCGCCTGCCAGAGGCCAATCTTGCCTTTTCTGCCATCAAAGATAGGAAAGCCATTGGGAAAGTGATGATTGTTCTTGACGAGCCAAGCAGTGTAAGTCAAAGCTTTAATCAGAGTGTAAGGTCAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

334

Amino Acids

35.56

Weight (kDa)

9.11

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	140 - 260	6.2e-23	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	172 - 313	2.8e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	1 cut(s)	838
AciI	CCGC	8 cut(s)	189, 234, 315, 431, 434, 473, 720, 874
AclWI	GGATC	3 cut(s)	26, 39, 611
AcoI	YGGCCR	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	2 cut(s)	41, 177
AfaI	GTAC	2 cut(s)	438, 764
AfiI	CCNNNNNNNGG	2 cut(s)	626, 883
AgsI	TTSAA	5 cut(s)	145, 508, 580, 661, 803
AleI	CACNNNNGTG	1 cut(s)	113
Alw21I	GWGCWC	3 cut(s)	325, 383, 673
Alw26I	GTCTC	2 cut(s)	95, 199
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	3 cut(s)	26, 39, 611
AoxI	GGCC	5 cut(s)	184, 312, 369, 841, 885
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	410
Asp700I	GAANNNNTTC	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	4 cut(s)	185, 342, 369, 706
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	127, 356, 841
AvaII	GGWCC	2 cut(s)	342, 706
BaeGI	GKGCMC	1 cut(s)	325
BamHI	GGATCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	383
BauI	CACGAG	1 cut(s)	136
Bbv12I	GWGCWC	3 cut(s)	325, 383, 673
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	2 cut(s)	860, 914
BceAI	ACGGC	3 cut(s)	164, 176, 446
BclI	TGATCA	2 cut(s)	523, 846
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	95, 199
BfaI	CTAG	2 cut(s)	398, 480
BfmI	CTRYAG	1 cut(s)	775
BisI	GCNGC	4 cut(s)	234, 315, 411, 432
BlsI	GCNGC	4 cut(s)	235, 316, 412, 433
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	342, 706
BmgT120I	GGNCC	4 cut(s)	185, 342, 369, 706
BmiI	GGNNCC	6 cut(s)	33, 187, 244, 343, 460, 708
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	2 cut(s)	247, 775
BmuI	ACTGGG	2 cut(s)	247, 775
BpmI	CTGGAG	3 cut(s)	119, 435, 523
BpuMI	CCSGG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	851
BsaHI	GRCGYC	2 cut(s)	41, 177
BsaWI	WCCGGW	2 cut(s)	383, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	626, 883
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	4 cut(s)	102, 253, 749, 770
Bse8I	GATNNNNATC	1 cut(s)	851
BseGI	GGATG	1 cut(s)	852
BseJI	GATNNNNATC	1 cut(s)	851
BseLI	CCNNNNNNNGG	2 cut(s)	626, 883
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	4 cut(s)	102, 253, 749, 770
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	422
BsgI	GTGCAG	2 cut(s)	429, 518
Bsh1236I	CGCG	1 cut(s)	838
BshFI	GGCC	5 cut(s)	186, 314, 371, 843, 887
BsiHKAI	GWGCWC	3 cut(s)	325, 383, 673
BsiSI	CCGG	5 cut(s)	293, 329, 367, 384, 620
BslFI	GGGAC	2 cut(s)	355, 692
BslI	CCNNNNNNNGG	2 cut(s)	626, 883
BsmAI	GTCTC	2 cut(s)	95, 199
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	355, 692
BsnI	GGCC	5 cut(s)	186, 314, 371, 843, 887
Bsp1286I	GDGCHC	3 cut(s)	325, 383, 673
Bsp143I	GATC	7 cut(s)	31, 69, 268, 304, 523, 616, 846
BspACI	CCGC	8 cut(s)	189, 234, 315, 431, 434, 473, 720, 874
BspANI	GGCC	5 cut(s)	186, 314, 371, 843, 887
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	1 cut(s)	838
BspLI	GGNNCC	6 cut(s)	33, 187, 244, 343, 460, 708
BspPI	GGATC	3 cut(s)	26, 39, 611
BspQI	GCTCTTC	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	4 cut(s)	102, 253, 749, 770
BssAI	RCCGGY	1 cut(s)	328
BssMI	GATC	7 cut(s)	31, 69, 268, 304, 523, 616, 846
BssNI	GRCGYC	2 cut(s)	41, 177
BssSI	CACGAG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	751, 762
Bst6I	CTCTTC	3 cut(s)	48, 71, 363
BstACI	GRCGYC	2 cut(s)	41, 177
BstC8I	GCNNGC	1 cut(s)	878
BstDEI	CTNAG	1 cut(s)	489
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	1 cut(s)	852
BstFNI	CGCG	1 cut(s)	838
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	7 cut(s)	34, 72, 271, 307, 526, 619, 849
BstMAI	GTCTC	2 cut(s)	95, 199
BstMBI	GATC	7 cut(s)	31, 69, 268, 304, 523, 616, 846
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 485, 728, 893, 902
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	775
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	838
BstV1I	GCAGC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	5 cut(s)	186, 314, 371, 843, 887
BtsCI	GGATG	1 cut(s)	852
BtsI	GCAGTG	2 cut(s)	323, 967
BtsIMutI	CAGTG	3 cut(s)	323, 756, 967
Cac8I	GCNNGC	1 cut(s)	878
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	4 cut(s)	185, 342, 369, 706
CseI	GACGC	3 cut(s)	49, 185, 224
Csp6I	GTAC	2 cut(s)	437, 763
CviAII	CATG	5 cut(s)	350, 527, 649, 755, 828
CviQI	GTAC	2 cut(s)	437, 763
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	7 cut(s)	33, 71, 270, 306, 525, 618, 848
DpnII	GATC	7 cut(s)	31, 69, 268, 304, 523, 616, 846
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	3 cut(s)	48, 71, 363
EarI	CTCTTC	3 cut(s)	48, 71, 363
Ecl136II	GAGCTC	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	843
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	342, 706
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoO109I	RGGNCCY	2 cut(s)	342, 706
EcoT38I	GRGCYC	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	5 cut(s)	353, 530, 652, 758, 831
FaiI	YATR	8 cut(s)	351, 528, 615, 650, 686, 756, 829, 867
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	2 cut(s)	355, 692
FatI	CATG	5 cut(s)	349, 526, 648, 754, 827
FauI	CCCGC	2 cut(s)	196, 727
FbaI	TGATCA	2 cut(s)	523, 846
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	234, 315, 411, 432
FokI	GGATG	1 cut(s)	839
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	234, 315, 411, 432
FspBI	CTAG	2 cut(s)	398, 480
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	4 cut(s)	234, 315, 411, 432
GsuI	CTGGAG	3 cut(s)	119, 435, 523
HaeIII	GGCC	5 cut(s)	186, 314, 371, 843, 887
HapII	CCGG	5 cut(s)	293, 329, 367, 384, 620
HgaI	GACGC	3 cut(s)	49, 185, 224
HhaI	GCGC	1 cut(s)	838
Hin1I	GRCGYC	2 cut(s)	41, 177
Hin1II	CATG	5 cut(s)	353, 530, 652, 758, 831
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	3 cut(s)	590, 973, 998
HinfI	GANTC	5 cut(s)	88, 103, 207, 536, 806
HpaII	CCGG	5 cut(s)	293, 329, 367, 384, 620
HphI	GGTGA	3 cut(s)	127, 356, 841
Hpy166II	GTNNAC	3 cut(s)	175, 323, 535
Hpy188I	TCNGA	5 cut(s)	52, 87, 165, 206, 984
Hpy188III	TCNNGA	6 cut(s)	73, 92, 559, 577, 800, 947
Hpy8I	GTNNAC	3 cut(s)	175, 323, 535
Hpy99I	CGWCG	5 cut(s)	43, 179, 185, 218, 266
HpyAV	CCTTC	6 cut(s)	170, 238, 442, 487, 562, 646
HpyCH4III	ACNGT	2 cut(s)	751, 762
HpyCH4V	TGCA	6 cut(s)	18, 323, 335, 410, 499, 754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 485, 728, 893, 902
HpyF3I	CTNAG	1 cut(s)	489
Hsp92I	GRCGYC	2 cut(s)	41, 177
Hsp92II	CATG	5 cut(s)	353, 530, 652, 758, 831
HspAI	GCGC	1 cut(s)	836
Ksp22I	TGATCA	2 cut(s)	523, 846
Kzo9I	GATC	7 cut(s)	31, 69, 268, 304, 523, 616, 846
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	6 cut(s)	230, 248, 386, 458, 485, 668
Lsp1109I	GCAGC	1 cut(s)	422
MaeI	CTAG	2 cut(s)	398, 480
MaeIII	GTNAC	2 cut(s)	273, 362
MalI	GATC	7 cut(s)	33, 71, 270, 306, 525, 618, 848
MboI	GATC	7 cut(s)	31, 69, 268, 304, 523, 616, 846
MboII	GAAGA	4 cut(s)	65, 88, 350, 815
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	3 cut(s)	325, 383, 673
MluCI	AATT	3 cut(s)	23, 154, 661
MlyI	GAGTC	3 cut(s)	97, 216, 530
MmeI	TCCRAC	4 cut(s)	59, 403, 436, 604
MnlI	CCTC	7 cut(s)	289, 355, 410, 620, 697, 833, 877
MroXI	GAANNNNTTC	1 cut(s)	572
MseI	TTAA	5 cut(s)	594, 738, 813, 978, 1003
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	3 cut(s)	317, 413, 794
MspI	CCGG	5 cut(s)	293, 329, 367, 384, 620
MspR9I	CCNGG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	838
MwoI	GCNNNNNNNGC	5 cut(s)	320, 485, 728, 893, 902
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	7 cut(s)	31, 69, 268, 304, 523, 616, 846
NlaIII	CATG	5 cut(s)	353, 530, 652, 758, 831
NlaIV	GGNNCC	6 cut(s)	33, 187, 244, 343, 460, 708
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	273, 362
OliI	CACNNNNGTG	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	843
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	88, 806
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	235, 316, 412, 433
PleI	GAGTC	3 cut(s)	97, 215, 530
PpsI	GAGTC	3 cut(s)	97, 215, 530
PpuMI	RGGWCCY	2 cut(s)	342, 706
Psp124BI	GAGCTC	1 cut(s)	383
Psp5II	RGGWCCY	2 cut(s)	342, 706
PspN4I	GGNNCC	6 cut(s)	33, 187, 244, 343, 460, 708
PspPI	GGNCC	4 cut(s)	185, 342, 369, 706
PspPPI	RGGWCCY	2 cut(s)	342, 706
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	2 cut(s)	413, 794
RsaI	GTAC	2 cut(s)	438, 764
RsaNI	GTAC	2 cut(s)	437, 763
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	383
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	5 cut(s)	594, 738, 813, 978, 1003
SatI	GCNGC	4 cut(s)	234, 315, 411, 432
Sau3AI	GATC	7 cut(s)	31, 69, 268, 304, 523, 616, 846
Sau96I	GGNCC	4 cut(s)	185, 342, 369, 706
SchI	GAGTC	3 cut(s)	97, 216, 530
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	3 cut(s)	325, 383, 673
SfcI	CTRYAG	1 cut(s)	775
SinI	GGWCC	2 cut(s)	342, 706
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	23, 154, 661
SseBI	AGGCCT	1 cut(s)	843
SsiI	CCGC	8 cut(s)	189, 234, 315, 431, 434, 473, 720, 874
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	2 cut(s)	398, 480
SstI	GAGCTC	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	843
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	751, 762
TaqI	TCGA	3 cut(s)	72, 174, 787
TasI	AATT	3 cut(s)	23, 154, 661
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	3 cut(s)	236, 317, 434
TfiI	GAWTC	2 cut(s)	88, 806
Tru1I	TTAA	5 cut(s)	594, 738, 813, 978, 1003
Tru9I	TTAA	5 cut(s)	594, 738, 813, 978, 1003
TscAI	CASTG	3 cut(s)	330, 756, 967
TseFI	GTSAC	2 cut(s)	273, 362
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	2 cut(s)	273, 362
TspDTI	ATGAA	3 cut(s)	247, 665, 831
TspRI	CASTG	3 cut(s)	330, 756, 967
Tth111I	GACNNNGTC	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	321
VpaK11BI	GGWCC	2 cut(s)	342, 706
XagI	CCTNNNNNAGG	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	2 cut(s)	398, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.