MD07G1307700.v1.1

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0003784
Physical Location & Seq
Reverse (-)
36386470 .. 36387099
630 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1307700.v1.1.491

Sequence Viewer

Length: 348 bp
ATGATTTTGTATCTCAGGTACATGATACTAGCAACAACAACAGTGTCAACATTTGTGAAATATGTTTTCTATGTTACTGACATGCTTATGGAGGGACAATGGGAGAAGAAGCCTGTCTACACGTTCTACTTGGAACTTATTCGGGACTTGCTTCACTTGTCTCTGTATTTGTGCTTCTTCCTCGTGATTTTCACGTACTATGGTGTGCCATTGCACTTGATACGTGAGCTCTATGAAACATTTAGGAACTTTAAGATTCGCATTGCTGATTATATTCGTTATCGAAAGCTCACATCAAACATGAATGATCGATTCCCAGATGCTACGCCTGAAGAACTTAATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034620 GO:0034645 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070085 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1902494 GO:1990234 GO:1990381
KEGG Pathways
Metabolic & Signaling
ko04120 ko04141 map04120 map04141
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

116

Amino Acids

14.06

Weight (kDa)

7.81

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_SYVN1_N PF25563 3 - 100 3.2e-35 E3 ubiquitin-protein ligase synoviolin-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AfaI GTAC 2 cut(s) 20, 197
AflIII ACRYGT 1 cut(s) 120
AluBI AGCT 2 cut(s) 229, 289
AluI AGCT 2 cut(s) 229, 289
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 231
BarI GAAGNNNNNNTAC 4 cut(s) 101, 133, 158, 190
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 29
BmsI GCATC 1 cut(s) 310
Bsa29I ATCGAT 1 cut(s) 310
BsaAI YACGTR 2 cut(s) 195, 224
Bse3DI GCAATG 2 cut(s) 209, 261
BseCI ATCGAT 1 cut(s) 310
BseMI GCAATG 2 cut(s) 209, 261
BseMII CTCAG 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 231
BslFI GGGAC 2 cut(s) 108, 158
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 2 cut(s) 108, 158
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 310
BsrDI GCAATG 2 cut(s) 209, 261
BssMI GATC 1 cut(s) 307
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 43
BstBAI YACGTR 2 cut(s) 195, 224
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 85
Bsu15I ATCGAT 1 cut(s) 310
BsuTUI ATCGAT 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 48
ClaI ATCGAT 1 cut(s) 310
Csp6I GTAC 2 cut(s) 19, 196
CviAII CATG 3 cut(s) 22, 82, 301
CviJI RGCY 3 cut(s) 112, 229, 289
CviKI_1 RGCY 3 cut(s) 112, 229, 289
CviQI GTAC 2 cut(s) 19, 196
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 3 cut(s) 25, 85, 304
FaiI YATR 9 cut(s) 23, 63, 72, 83, 89, 201, 234, 273, 302
FaqI GGGAC 2 cut(s) 108, 158
FatI CATG 3 cut(s) 21, 81, 300
FblI GTMKAC 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 231
FspBI CTAG 1 cut(s) 29
Hin1II CATG 3 cut(s) 25, 85, 304
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 2 cut(s) 256, 312
Hpy166II GTNNAC 2 cut(s) 48, 118
Hpy188III TCNNGA 2 cut(s) 143, 184
Hpy8I GTNNAC 2 cut(s) 48, 118
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 3 cut(s) 122, 194, 223
HpyCH4V TGCA 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 3 cut(s) 122, 194, 223
Hsp92II CATG 3 cut(s) 25, 85, 304
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 3 cut(s) 126, 330, 342
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 29
MaeII ACGT 3 cut(s) 122, 194, 223
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 118, 169, 344
MhlI GDGCHC 1 cut(s) 231
MnlI CCTC 2 cut(s) 85, 191
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 2 cut(s) 252, 339
MslI CAYNNNNRTG 1 cut(s) 86
NdeII GATC 1 cut(s) 307
NlaIII CATG 3 cut(s) 25, 85, 304
NspI RCATGY 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 256, 312
Ppu21I YACGTR 2 cut(s) 195, 224
Psp124BI GAGCTC 1 cut(s) 231
RsaI GTAC 2 cut(s) 20, 197
RsaNI GTAC 2 cut(s) 19, 196
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 252, 339
Sau3AI GATC 1 cut(s) 307
SduI GDGCHC 1 cut(s) 231
SetI ASST 6 cut(s) 20, 125, 197, 226, 231, 291
SfaNI GCATC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 86
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 231
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 3 cut(s) 125, 197, 226
TaqI TCGA 2 cut(s) 283, 310
TfiI GAWTC 2 cut(s) 256, 312
Tru1I TTAA 2 cut(s) 252, 339
Tru9I TTAA 2 cut(s) 252, 339
TscAI CASTG 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 249, 317
TspRI CASTG 1 cut(s) 48
XceI RCATGY 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.