Prupe.2G325300_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
30067876 .. 30072001
4126 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G325300.1

Sequence Viewer

Length: 1644 bp
ATGATGAGGCTGCAAACCTATGCGGGGATTAGCTTGGTAGCAACTCTAGCGATTATTTATCATGCATTTAGCAGTAGAGGCCAGTTTTACCCGGCCATGGTTTATTTATCAACCTCCAAGATCAGTTTGGTGCTGCTTCTCAACATGGGTCTGGTCATTATGTGTACTATGTGGCAATTAACTAAAAAGCTCTTCCTTGGATCACTCCGAGAAGCCGAGGTGGAGAGGCTTAATGAGCAGTCATGGAGGGAAGTCATGGAGATCCTCTTTGCTATTACTATTTTCAGGCAAGACTTCTCAGTCTCCTTTCTTGCTATGGTCACAGCTCTGCTGTTGATCAAGGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATTGAGACTACCCCATCCGTGCCCATGCTGTCTCATGTTCGGATTGTCTCCTTTTTGGGATTCTTGCTTGTTGTAGATAGTCTCTTTTTGTACAGTTCAATTAGCAATTTGATAAAGACACAAAAGGCTTCGGTTTCCCTCTTCTTTTCATTTGAGTACATGATACTAGCGACAACGACGGTGTCAACATTTGTGAAATATGTTTTCTATGTTAGCGACATGCTTATGGAGGGACAATGGGAGAAGAAGCCTGTCTACACATTTTATGTGGAACTTATTCGGGACTTGCTCCACTTATCCATGTATCTGTGCTTCTTTCTTGTGATTTTCATGTACTATGGTGTGCCATTGCACTTAATACGTGAGCTCTATGAAACATTTAGGAACTTTAAGATTCGCCTTGGTGATTACATTCGTTATCGAAAGCTCACTTCGAACATGAATGATCGATTCCCAGATGCTACGCCTGAAGAGCTTAATGCAAGTGACGCAACTTGCATCATTTGCCGTGAAGAGATGACAACAGCCAAGAAACTATTATGTGGACACCTTTTTCATGTGCCTTGCCTGCGATCATGGTTAGAGCGACAGCATACCTGTCCTACTTGCAGAGCCCTAGTTGAACCTCCTGAAAATGGGGCAGGTACAGCTGGAGGACATAGGGGATCACGGTCCGATGCTCATCAACAGGGGACTGGCACAACAGCTCAAGGTGGTGGAGTTGCTGGTGGAGTTGCTGGTGATAATCTCAGTCAACATGAAGCCAGACTCCGAGCTGCTGCTGCTGCTGCATCGATATATGAGAAGTCTCATGTATATCCATCTGCAAACAGACTAGTATGGTCTCCTGGATATGTGGCACTTCCTCAGGTTCAAAGACAAATGGCCGACTCCGCTAACACTGAATCTAGTGGAGTATTGCACCCACAGCTTGCAACCCCTGGTGGACCTTCAAACTTGTCCTCCCCTCAATTTCCACATTACATGTTTGTCCCATTTGAGGTTCCTGATGTGGCCTATGAGGAGAGGTTGGGCGGTGATCCGAATATAACAGCTTCTCAACTGGAGGCCCAGAAAAAATTTCTCCAACACCAGATCGAGATCCTGCAGAATCAGCTCAAAACTTTACAGAAGCCAAAACCGAAGGAAAGCATGGACACAGGGCCATCAGCATCTTTGGATGGCAAAGGAAAGAATGTCGAATCTTCGTCCTCGTCTGTTTCAGATTGTGGACGTCATGTGGAGCTTGAAGAGATTGATTCATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

548

Amino Acids

61.38

Weight (kDa)

6.97

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AatII GACGTC 1 cut(s) 1615
Acc36I ACCTGC 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 633
AciI CCGC 3 cut(s) 23, 1272, 1413
AclWI GGATC 5 cut(s) 208, 256, 1051, 1412, 1474
AcoI YGGCCR 2 cut(s) 93, 1263
AcsI RAATTY 1 cut(s) 1457
AcuI CTGAAG 1 cut(s) 867
AcyI GRCGYC 1 cut(s) 1612
AfaI GTAC 5 cut(s) 166, 470, 536, 713, 1024
AfiI CCNNNNNNNGG 4 cut(s) 24, 97, 1013, 1378
AflIII ACRYGT 1 cut(s) 1362
AgsI TTSAA 6 cut(s) 374, 477, 1001, 1253, 1332, 1628
AhlI ACTAGT 1 cut(s) 1213
AjnI CCWGG 2 cut(s) 1225, 1318
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 7 cut(s) 307, 377, 414, 430, 464, 1191, 1227
AlwI GGATC 5 cut(s) 208, 256, 1051, 1412, 1474
AoxI GGCC 6 cut(s) 79, 93, 1263, 1392, 1446, 1541
ApeKI GCWGC 7 cut(s) 10, 133, 1154, 1157, 1160, 1163, 1166
ApoI RAATTY 1 cut(s) 1457
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 4 cut(s) 1050, 1325, 1447, 1541
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 3 cut(s) 794, 1130, 1427
AsuII TTCGAA 1 cut(s) 812
AvaII GGWCC 2 cut(s) 1050, 1325
AxyI CCTNAGG 1 cut(s) 1245
BaeGI GKGCMC 1 cut(s) 402
BanII GRGCYC 2 cut(s) 747, 994
BarI GAAGNNNNNNTAC 4 cut(s) 617, 649, 674, 706
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 6 cut(s) 120, 1141, 1144, 1147, 1150, 1153
BccI CCATC 4 cut(s) 400, 1207, 1552, 1553
BceAI ACGGC 1 cut(s) 870
BciT130I CCWGG 2 cut(s) 1227, 1320
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 7 cut(s) 307, 377, 414, 430, 464, 1191, 1227
BcuI ACTAGT 1 cut(s) 1213
BfaI CTAG 5 cut(s) 47, 545, 995, 1214, 1287
BfmI CTRYAG 1 cut(s) 1484
BfuAI ACCTGC 1 cut(s) 1010
BisI GCNGC 7 cut(s) 11, 134, 1155, 1158, 1161, 1164, 1167
BlsI GCNGC 7 cut(s) 12, 135, 1156, 1159, 1162, 1165, 1168
Bme1390I CCNGG 3 cut(s) 92, 1227, 1320
Bme18I GGWCC 2 cut(s) 1050, 1325
BmgT120I GGNCC 4 cut(s) 1050, 1325, 1447, 1541
BmiI GGNNCC 1 cut(s) 1383
BmrFI CCNGG 3 cut(s) 92, 1227, 1320
BmsI GCATC 5 cut(s) 826, 885, 1045, 1178, 1559
BpmI CTGGAG 2 cut(s) 1050, 1463
Bpu14I TTCGAA 1 cut(s) 812
BpuEI CTTGAG 1 cut(s) 1071
BpuMI CCSGG 1 cut(s) 92
Bsa29I ATCGAT 2 cut(s) 826, 1172
BsaAI YACGTR 1 cut(s) 740
BsaBI GATNNNNATC 2 cut(s) 1059, 1478
BsaHI GRCGYC 1 cut(s) 1612
BsaI GGTCTC 1 cut(s) 1227
BsaJI CCNNGG 5 cut(s) 96, 196, 216, 778, 1318
BsaXI ACNNNNNCTCC 2 cut(s) 1325, 1355
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 97, 1013, 1378
Bse1I ACTGG 3 cut(s) 82, 1078, 1446
Bse21I CCTNAGG 1 cut(s) 1245
Bse3DI GCAATG 1 cut(s) 725
Bse8I GATNNNNATC 2 cut(s) 1059, 1478
BseBI CCWGG 2 cut(s) 1227, 1320
BseCI ATCGAT 2 cut(s) 826, 1172
BseDI CCNNGG 5 cut(s) 96, 196, 216, 778, 1318
BseGI GGATG 2 cut(s) 392, 1564
BseJI GATNNNNATC 2 cut(s) 1059, 1478
BseLI CCNNNNNNNGG 4 cut(s) 24, 97, 1013, 1378
BseMI GCAATG 1 cut(s) 725
BseMII CTCAG 4 cut(s) 312, 374, 1141, 1259
BseNI ACTGG 3 cut(s) 82, 1078, 1446
BseRI GAGGAG 1 cut(s) 1415
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 6 cut(s) 120, 1141, 1144, 1147, 1150, 1153
BshFI GGCC 6 cut(s) 81, 95, 1265, 1394, 1448, 1543
BshVI ATCGAT 2 cut(s) 826, 1172
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 4 cut(s) 624, 674, 1084, 1355
BslI CCNNNNNNNGG 4 cut(s) 24, 97, 1013, 1378
BsmAI GTCTC 7 cut(s) 307, 377, 414, 430, 464, 1191, 1227
BsmFI GGGAC 4 cut(s) 624, 674, 1084, 1355
BsnI GGCC 6 cut(s) 81, 95, 1265, 1394, 1448, 1543
Bso31I GGTCTC 1 cut(s) 1227
Bsp119I TTCGAA 1 cut(s) 812
Bsp1286I GDGCHC 3 cut(s) 402, 747, 994
Bsp1407I TGTACA 1 cut(s) 468
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 3 cut(s) 23, 1272, 1413
BspANI GGCC 6 cut(s) 81, 95, 1265, 1394, 1448, 1543
BspCNI CTCAG 4 cut(s) 311, 373, 1140, 1258
BspDI ATCGAT 2 cut(s) 826, 1172
BspLI GGNNCC 1 cut(s) 1383
BspMAI CTGCAG 1 cut(s) 1488
BspMI ACCTGC 1 cut(s) 1010
BspPI GGATC 5 cut(s) 208, 256, 1051, 1412, 1474
BspQI GCTCTTC 2 cut(s) 197, 843
BspT104I TTCGAA 1 cut(s) 812
BspTNI GGTCTC 1 cut(s) 1227
BsrDI GCAATG 1 cut(s) 725
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 3 cut(s) 82, 1078, 1446
BssECI CCNNGG 5 cut(s) 96, 196, 216, 778, 1318
BssNI GRCGYC 1 cut(s) 1612
BssT1I CCWWGG 3 cut(s) 96, 196, 778
Bst2UI CCWGG 2 cut(s) 1227, 1320
Bst4CI ACNGT 3 cut(s) 473, 559, 1050
Bst6I CTCTTC 6 cut(s) 197, 359, 524, 843, 885, 1623
BstACI GRCGYC 1 cut(s) 1612
BstAPI GCANNNNNTGC 1 cut(s) 882
BstAUI TGTACA 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 740
BstBI TTCGAA 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 947, 1311
BstDEI CTNAG 4 cut(s) 298, 360, 1127, 1245
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 392, 1564
BstMAI GTCTC 7 cut(s) 307, 377, 414, 430, 464, 1191, 1227
BstNI CCWGG 2 cut(s) 1227, 1320
BstNSI RCATGY 2 cut(s) 601, 1366
BstSCI CCNGG 3 cut(s) 90, 1225, 1318
BstSFI CTRYAG 1 cut(s) 1484
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 6 cut(s) 120, 1141, 1144, 1147, 1150, 1153
BstX2I RGATCY 2 cut(s) 261, 1479
BstYI RGATCY 2 cut(s) 261, 1479
Bsu15I ATCGAT 2 cut(s) 826, 1172
Bsu36I CCTNAGG 1 cut(s) 1245
BsuRI GGCC 6 cut(s) 81, 95, 1265, 1394, 1448, 1543
BsuTUI ATCGAT 2 cut(s) 826, 1172
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 392, 1564
BtsIMutI CAGTG 1 cut(s) 1278
BveI ACCTGC 1 cut(s) 1010
Cac8I GCNNGC 2 cut(s) 947, 1311
Cfr13I GGNCC 4 cut(s) 1050, 1325, 1447, 1541
ClaI ATCGAT 2 cut(s) 826, 1172
CpoI CGGWCCG 1 cut(s) 1050
CseI GACGC 1 cut(s) 875
Csp6I GTAC 5 cut(s) 165, 469, 535, 712, 1023
CspI CGGWCCG 1 cut(s) 1050
CviQI GTAC 5 cut(s) 165, 469, 535, 712, 1023
DdeI CTNAG 4 cut(s) 298, 360, 1127, 1245
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 2 cut(s) 93, 1263
Eam1104I CTCTTC 6 cut(s) 197, 359, 524, 843, 885, 1623
EarI CTCTTC 6 cut(s) 197, 359, 524, 843, 885, 1623
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 3 cut(s) 96, 196, 778
Eco24I GRGCYC 2 cut(s) 747, 994
Eco31I GGTCTC 1 cut(s) 1227
Eco47I GGWCC 2 cut(s) 1050, 1325
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 1 cut(s) 867
Eco81I CCTNAGG 1 cut(s) 1245
EcoICRI GAGCTC 1 cut(s) 745
EcoRII CCWGG 2 cut(s) 1225, 1318
EcoT14I CCWWGG 3 cut(s) 96, 196, 778
EcoT22I ATGCAT 1 cut(s) 67
EcoT38I GRGCYC 2 cut(s) 747, 994
ErhI CCWWGG 3 cut(s) 96, 196, 778
FaqI GGGAC 4 cut(s) 624, 674, 1084, 1355
FauI CCCGC 1 cut(s) 16
FbaI TGATCA 1 cut(s) 336
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 7 cut(s) 11, 134, 1155, 1158, 1161, 1164, 1167
FokI GGATG 2 cut(s) 379, 1571
FriOI GRGCYC 2 cut(s) 747, 994
Fsp4HI GCNGC 7 cut(s) 11, 134, 1155, 1158, 1161, 1164, 1167
FspBI CTAG 5 cut(s) 47, 545, 995, 1214, 1287
GluI GCNGC 7 cut(s) 11, 134, 1155, 1158, 1161, 1164, 1167
GsuI CTGGAG 2 cut(s) 1050, 1463
HaeIII GGCC 6 cut(s) 81, 95, 1265, 1394, 1448, 1543
HapII CCGG 1 cut(s) 92
HgaI GACGC 1 cut(s) 875
Hin1I GRCGYC 1 cut(s) 1612
HincII GTYRAC 2 cut(s) 564, 1133
HindII GTYRAC 2 cut(s) 564, 1133
HinfI GANTC 9 cut(s) 438, 772, 828, 1146, 1268, 1283, 1489, 1580, 1637
HpaII CCGG 1 cut(s) 92
HphI GGTGA 3 cut(s) 794, 1130, 1427
Hpy166II GTNNAC 7 cut(s) 165, 564, 634, 923, 1133, 1325, 1610
Hpy188I TCNGA 7 cut(s) 209, 363, 420, 1054, 1151, 1422, 1603
Hpy188III TCNNGA 4 cut(s) 659, 1007, 1385, 1477
Hpy8I GTNNAC 7 cut(s) 165, 564, 634, 923, 1133, 1325, 1610
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 2 cut(s) 1338, 1516
HpyCH4III ACNGT 3 cut(s) 473, 559, 1050
HpyCH4IV ACGT 2 cut(s) 739, 1612
HpyF3I CTNAG 4 cut(s) 298, 360, 1127, 1245
HpySE526I ACGT 2 cut(s) 739, 1612
Hsp92I GRCGYC 1 cut(s) 1612
Ksp22I TGATCA 1 cut(s) 336
LguI GCTCTTC 2 cut(s) 197, 843
LmnI GCTCC 2 cut(s) 672, 1621
Lsp1109I GCAGC 6 cut(s) 120, 1141, 1144, 1147, 1150, 1153
LweI GCATC 5 cut(s) 826, 885, 1045, 1178, 1559
MaeI CTAG 5 cut(s) 47, 545, 995, 1214, 1287
MaeII ACGT 2 cut(s) 739, 1612
MaeIII GTNAC 2 cut(s) 319, 863
MboII GAAGA 8 cut(s) 184, 376, 511, 634, 860, 902, 1575, 1640
MflI RGATCY 2 cut(s) 261, 1479
MhlI GDGCHC 3 cut(s) 402, 747, 994
MluCI AATT 5 cut(s) 176, 477, 484, 1349, 1457
MlyI GAGTC 2 cut(s) 1140, 1262
MmeI TCCRAC 1 cut(s) 1489
Mph1103I ATGCAT 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 5 cut(s) 179, 231, 734, 768, 855
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 3 cut(s) 92, 1227, 1320
MvaI CCWGG 2 cut(s) 1227, 1320
NciI CCSGG 1 cut(s) 92
NcoI CCATGG 1 cut(s) 96
NlaIV GGNNCC 1 cut(s) 1383
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 319, 863
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 2 cut(s) 601, 1366
NspV TTCGAA 1 cut(s) 812
PciI ACATGT 1 cut(s) 1362
PciSI GCTCTTC 2 cut(s) 197, 843
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 7 cut(s) 438, 772, 828, 1283, 1489, 1580, 1637
PflFI GACNNNGTC 1 cut(s) 559
PfoI TCCNGGA 1 cut(s) 1225
PkrI GCNGC 7 cut(s) 12, 135, 1156, 1159, 1162, 1165, 1168
PleI GAGTC 2 cut(s) 1140, 1262
PpsI GAGTC 2 cut(s) 1140, 1262
Ppu21I YACGTR 1 cut(s) 740
PscI ACATGT 1 cut(s) 1362
Psp124BI GAGCTC 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 1225, 1318
PspGI CCWGG 2 cut(s) 1225, 1318
PspN4I GGNNCC 1 cut(s) 1383
PspPI GGNCC 4 cut(s) 1050, 1325, 1447, 1541
PstI CTGCAG 1 cut(s) 1488
PsuI RGATCY 2 cut(s) 261, 1479
PsyI GACNNNGTC 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 5 cut(s) 166, 470, 536, 713, 1024
RsaNI GTAC 5 cut(s) 165, 469, 535, 712, 1023
RseI CAYNNNNRTG 1 cut(s) 602
Rsr2I CGGWCCG 1 cut(s) 1050
RsrII CGGWCCG 1 cut(s) 1050
SacI GAGCTC 1 cut(s) 747
SapI GCTCTTC 2 cut(s) 197, 843
SaqAI TTAA 5 cut(s) 179, 231, 734, 768, 855
SatI GCNGC 7 cut(s) 11, 134, 1155, 1158, 1161, 1164, 1167
Sau96I GGNCC 4 cut(s) 1050, 1325, 1447, 1541
SchI GAGTC 2 cut(s) 1140, 1262
ScrFI CCNGG 3 cut(s) 92, 1227, 1320
SduI GDGCHC 3 cut(s) 402, 747, 994
SfaNI GCATC 5 cut(s) 826, 885, 1045, 1178, 1559
SfcI CTRYAG 1 cut(s) 1484
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 2 cut(s) 1050, 1325
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 1086
SmoI CTYRAG 1 cut(s) 1086
SpeI ACTAGT 1 cut(s) 1213
Sse9I AATT 5 cut(s) 176, 477, 484, 1349, 1457
SsiI CCGC 3 cut(s) 23, 1272, 1413
SspMI CTAG 5 cut(s) 47, 545, 995, 1214, 1287
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 90, 1225, 1318
StyI CCWWGG 3 cut(s) 96, 196, 778
TaaI ACNGT 3 cut(s) 473, 559, 1050
TaiI ACGT 2 cut(s) 742, 1615
TaqI TCGA 6 cut(s) 799, 812, 826, 1172, 1476, 1578
TasI AATT 5 cut(s) 176, 477, 484, 1349, 1457
TatI WGTACW 4 cut(s) 164, 468, 534, 711
TfiI GAWTC 7 cut(s) 438, 772, 828, 1283, 1489, 1580, 1637
Tru1I TTAA 5 cut(s) 179, 231, 734, 768, 855
Tru9I TTAA 5 cut(s) 179, 231, 734, 768, 855
TscAI CASTG 1 cut(s) 1285
TseFI GTSAC 2 cut(s) 319, 863
TseI GCWGC 7 cut(s) 10, 133, 1154, 1157, 1160, 1163, 1166
Tsp45I GTSAC 2 cut(s) 319, 863
TspDTI ATGAA 7 cut(s) 516, 697, 765, 833, 923, 1152, 1629
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 1285
Tth111I GACNNNGTC 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 1050, 1325
XapI RAATTY 1 cut(s) 1457
XceI RCATGY 2 cut(s) 601, 1366
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 5 cut(s) 47, 545, 995, 1214, 1287
ZraI GACGTC 1 cut(s) 1613
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.