RchiOBHm_Chr1g0384071

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003784
Physical Location & Seq
Reverse (-)
68107120 .. 68109019
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60692

Sequence Viewer

Length: 483 bp
ATGAGCCATCATGAAGCAAGACTGCAAGCTGCTGCGGCAGCTGCATCAATATATGAGAAATCTTATGTATATCCATCTGCAAACAGACTAGTATGGTCTGCTGGATATGCCGCACTTCCTCTGGTTAATAGACATATGGCTGACTCCCCTAGTACTGATTTACAATCACAACCACTTGCAACCCCTGGTGGACCTGCAAACTTGTCGTTGCCTCAACCTCCGCATTACATGTTTTCTCCTTTTCATGGAGCCAATGGGGAGAGGTCGGGCGGCAATACAAATATAACAGCTTCTCAGCTGGAGGCCCAGAGAAAAGTTCTTCAGCACCAGATTGAGATCCTGCAGAATCAGCTCCAAATTTTACAAAAGCCAAAACCCAAGGAAAGTGTGGAAGGGGGTCCAACATTAGCAGATAGCAAAGGAAAGAGTGTTGCACCTTCGTCTGAATCAAATTGTGGGCGTCATGAGGATGTTGTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034620 GO:0034645 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070085 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1902494 GO:1990234 GO:1990381
KEGG Pathways
Metabolic & Signaling
ko04120 ko04141 map04120 map04141
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

160

Amino Acids

17.15

Weight (kDa)

6.65

Isoelectric Point (pI)

72.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AciI CCGC 4 cut(s) 35, 111, 221, 270
AclWI GGATC 1 cut(s) 331
AcsI RAATTY 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 460
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 228
AhlI ACTAGT 1 cut(s) 88
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 5 cut(s) 29, 41, 290, 298, 352
AluI AGCT 5 cut(s) 29, 41, 290, 298, 352
AlwI GGATC 1 cut(s) 331
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 4 cut(s) 29, 32, 38, 41
ApoI RAATTY 1 cut(s) 357
AspS9I GGNCC 3 cut(s) 191, 304, 398
AvaII GGWCC 2 cut(s) 191, 398
BbvI GCAGC 4 cut(s) 16, 19, 28, 50
BccI CCATC 2 cut(s) 15, 82
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 1 cut(s) 186
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 3 cut(s) 89, 150, 481
BfmI CTRYAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 7 cut(s) 30, 33, 36, 39, 42, 111, 271
BlsI GCNGC 7 cut(s) 31, 34, 37, 40, 43, 112, 272
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 2 cut(s) 191, 398
BmgT120I GGNCC 3 cut(s) 191, 304, 398
BmiI GGNNCC 2 cut(s) 250, 399
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 184, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 335
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 184, 378
BseGI GGATG 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 308
BseXI GCAGC 4 cut(s) 16, 19, 28, 50
BshFI GGCC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 245
BsnI GGCC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 336
BspACI CCGC 4 cut(s) 35, 111, 221, 270
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 2 cut(s) 10, 463
BspLI GGNNCC 2 cut(s) 250, 399
BspMAI CTGCAG 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 184, 378
BssMI GATC 1 cut(s) 336
BssNI GRCGYC 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 1 cut(s) 339
BstMBI GATC 1 cut(s) 336
BstMWI GCNNNNNNNGC 5 cut(s) 35, 38, 41, 107, 349
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 341
BstV1I GCAGC 4 cut(s) 16, 19, 28, 50
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 1 cut(s) 475
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 27
CciI TCATGA 2 cut(s) 10, 463
Cfr13I GGNCC 3 cut(s) 191, 304, 398
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 153
CviAII CATG 4 cut(s) 11, 229, 245, 464
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 191, 398
Eco57I CTGAAG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 4 cut(s) 14, 232, 248, 467
FatI CATG 4 cut(s) 10, 228, 244, 463
FauNDI CATATG 1 cut(s) 135
Fnu4HI GCNGC 7 cut(s) 30, 33, 36, 39, 42, 111, 271
Fsp4HI GCNGC 7 cut(s) 30, 33, 36, 39, 42, 111, 271
FspBI CTAG 3 cut(s) 89, 150, 481
GluI GCNGC 7 cut(s) 30, 33, 36, 39, 42, 111, 271
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 305
HgaI GACGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 4 cut(s) 14, 232, 248, 467
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 3 cut(s) 143, 346, 446
Hpy166II GTNNAC 2 cut(s) 191, 478
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 2 cut(s) 11, 464
Hpy8I GTNNAC 2 cut(s) 191, 478
HpyAV CCTTC 2 cut(s) 386, 447
HpyCH4V TGCA 7 cut(s) 25, 44, 80, 179, 197, 343, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 38, 41, 107, 349
HpyF3I CTNAG 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 4 cut(s) 14, 232, 248, 467
Kzo9I GATC 1 cut(s) 336
LmnI GCTCC 2 cut(s) 248, 357
LpnPI CCDG 9 cut(s) 87, 107, 171, 198, 207, 284, 320, 341, 353
Lsp1109I GCAGC 4 cut(s) 16, 19, 28, 50
LweI GCATC 1 cut(s) 53
MaeI CTAG 3 cut(s) 89, 150, 481
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 336
MluCI AATT 2 cut(s) 357, 451
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 6 cut(s) 129, 222, 228, 255, 295, 460
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 2 cut(s) 41, 298
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 5 cut(s) 35, 38, 41, 107, 349
NdeI CATATG 1 cut(s) 135
NdeII GATC 1 cut(s) 336
NlaIII CATG 4 cut(s) 14, 232, 248, 467
NlaIV GGNNCC 2 cut(s) 250, 399
NspI RCATGY 1 cut(s) 232
PagI TCATGA 2 cut(s) 10, 463
PciI ACATGT 1 cut(s) 228
PfeI GAWTC 2 cut(s) 346, 446
PkrI GCNGC 7 cut(s) 31, 34, 37, 40, 43, 112, 272
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PscI ACATGT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 250, 399
PspPI GGNCC 3 cut(s) 191, 304, 398
PstI CTGCAG 1 cut(s) 345
PsuI RGATCY 1 cut(s) 336
PvuII CAGCTG 2 cut(s) 41, 298
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 7 cut(s) 30, 33, 36, 39, 42, 111, 271
Sau3AI GATC 1 cut(s) 336
Sau96I GGNCC 3 cut(s) 191, 304, 398
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 186
SetI ASST 9 cut(s) 31, 43, 196, 220, 266, 292, 300, 354, 439
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 341
SinI GGWCC 2 cut(s) 191, 398
SmiMI CAYNNNNRTG 1 cut(s) 468
SpeI ACTAGT 1 cut(s) 88
Sse9I AATT 2 cut(s) 357, 451
SsiI CCGC 4 cut(s) 35, 111, 221, 270
SspMI CTAG 3 cut(s) 89, 150, 481
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 378
TasI AATT 2 cut(s) 357, 451
TatI WGTACW 1 cut(s) 152
TauI GCSGC 3 cut(s) 38, 113, 273
TfiI GAWTC 2 cut(s) 346, 446
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 4 cut(s) 29, 32, 38, 41
TspDTI ATGAA 2 cut(s) 27, 233
VpaK11BI GGWCC 2 cut(s) 191, 398
XapI RAATTY 1 cut(s) 357
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XspI CTAG 3 cut(s) 89, 150, 481
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.