Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003784

Physical Location & Seq

Genomic Coordinates Reverse (-)

21304714 .. 21307748

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGATGAAGCTACAAACCTATGCCGGGATTAGTTTGGTAGCAACCCTAGCGATTGTTTATCATGCATTTAGTAGTAGAGGTCAGTTTTATCCGGCAATGGTGTATTTGTCGACGTCGAAGATCAGCTTGGTGTTGCTTCTCAACATGGGTCTGGTCATTATGTGTACTATGTGGCAATTGACTAAAAAGATCTTCCTTGGATCACTCCGGGAAGCCGAGGTGGAGAGGCTTAACGAGCAATCATGGCGGGAAGTCATGGAAATCCTCTTTGCCATTACTATTTTCAGGCAGGACTTTTCGGTCTCGTTTCTTGCTATGGTTACTGCTTTGTTGTTGATCAAGGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAGTACATTGAGACCACTCCTTCCGTGCCCATGCTGTCTCATGTTCGGATTGTCTCCTTTTTGGGTTTCTTGCTTGTTCTAGATAGTCTCTTTTTGTACAGTTCTGTTAGCAACTTGATAAGGACACAAAAGGCCTCAGTTTCCCTCTTCTTTTCATTCGAGTACATGATACTAGCAACAACAACAGTGTCAACATTTGTGAAATATGTTTTCTATGTTACTGACATGCTTATGGAGGGACAATGGGAGAAGAAGCCTGTCTACACGTTCTACTTGGAACTTATTCGGGACTTGCTTCATTTGTCTATGTATTTGTGCTTCTTCCTCGCAATTTTCACATACTATGGTGTGCCACTGCACTTGATACGTGAGCTCTATGAAACATTTAGGAACTTTAAGCTTCGCATTGCTGATTACATTCGTTATCGAAAGCTCACCTCAAACATGAATGATCGATTCCCAGATGCTACGCCTGAAGAGCTTAATGCAAGTGACGCAATTTGTATCATTTGCCGTGAAGAGATGACAACAGCCAAGAAACTATTATGCGGACACCTTTTTCATGTGTCTTGCATTCGATCATGGTTAGAGCGACAGCATACCTGCCCTACTTGCAGGGCTTTAGTTGTACCTCCTGACAGTGGGACAGGTACAGCTGGCGGACATAGGGGTTCACGGTCAGATGCTCATCAACAGGGGACAGGCACAATGGCTCAGGGTGGTGGAGTTGCTGGTGATAGTGTGAGCCAACATGAAGCCAGGCTCCGAGCTGCTGTTGCTGCTGCATCGATATATGAGAAGTCTCATGTATATCCTTCTGCAAACAGACTAGTATGGTCTCCTGGATATGCGGCACTTCCTCAGGTACAAAGACATACGGCTGACTCCCCTAATACTGAATCTAGTGGAGAAGCTTCTAGTGGACAATCACAGCCGCAGCTTGCAACCCCTGGTGGAGCTGCAAACTTGTCCTTCTCTCAGTTCCCACCTTACATGTTTGTCCCTGGGGCCAATGTGGCCTATGGGGGGAGGCTGAGCAGCGATCCAAATCTGACAGCTTCTGAGCTGGAGGCCCAGAAAAAGTTTCTTCAGCACCAGATAGAGATACTGCAGAATCAGCTCCAAGTTTTACAGAAACCAAAACTTAAGGAAAGTGTGGACATGGGTCCAACAAGGGCATCTTTGGATGGCAAAGGAAAGAGCGTTGCAGCTCCTTCATCTGTTTCAGATTGTGGACGTCATGAAGATCGGGTTGATACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034620 GO:0034645 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070085 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1902494 GO:1990234 GO:1990381

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

545

Amino Acids

60.79

Weight (kDa)

8.58

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65040 AT1G65040 AT1G65040 AT1G65040 AT1G65040 AT1G65040
fragaria_vesca	FvH4_7g33880 FvH4_7g33880 FvH4_7g33880
malus_domestica	MD01G1235000.v1.1 MD01G1235300.v1.1 MD07G1307700.v1.1 MD07G1308100.v1.1
prunus_persica	Prupe.2G325300_v2.0.a1 Prupe.2G325300_v2.0.a1 Prupe.6G242100_v2.0.a1
pyrus_communis	pycom01g24310 pycom01g24350 pycom07g28030 pycom17g03700
rosa_chinensis	RchiOBHm_Chr1g0384051 RchiOBHm_Chr1g0384071 RchiOBHm_Chr1g0384081
rosa_laevigata	RLG00000026074
rosa_multiflora	Rmu_sc0005139.1_g000019
rosa_roxburghii	Rroxscaffold_4G00277010
rosa_rugosa	Rorug01G0444600 Rorug01G0444700
rosa_samantha	Rh1AG469900 Rh1AG470000 Rh1BG427500 Rh1CG440200 Rh1DG460500
rosa_wichuraiana	Rw1G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AatII	GACGTC	2 cut(s)	116, 1612
Acc36I	ACCTGC	1 cut(s)	983
AccI	GTMKAC	2 cut(s)	110, 633
AciI	CCGC	5 cut(s)	247, 921, 1032, 1223, 1307
AclWI	GGATC	2 cut(s)	208, 1409
AcuI	CTGAAG	2 cut(s)	867, 1445
AcyI	GRCGYC	2 cut(s)	113, 1609
AfaI	GTAC	7 cut(s)	166, 377, 470, 536, 1002, 1024, 1239
AfiI	CCNNNNNNNGG	3 cut(s)	24, 1013, 1398
AflII	CTTAAG	1 cut(s)	1517
AflIII	ACRYGT	2 cut(s)	636, 1365
AhlI	ACTAGT	1 cut(s)	1201
AjnI	CCWGG	4 cut(s)	1130, 1213, 1321, 1375
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	7 cut(s)	307, 377, 414, 430, 464, 1179, 1215
AlwI	GGATC	2 cut(s)	208, 1409
AlwNI	CAGNNNCTG	1 cut(s)	1433
AoxI	GGCC	4 cut(s)	504, 1380, 1389, 1443
ApeKI	GCWGC	7 cut(s)	1142, 1151, 1154, 1309, 1331, 1410, 1580
Asp700I	GAANNNNTTC	1 cut(s)	654
AspS9I	GGNCC	3 cut(s)	1380, 1444, 1538
AsuC2I	CCSGG	2 cut(s)	25, 209
AsuHPI	GGTGA	2 cut(s)	799, 1118
AvaII	GGWCC	1 cut(s)	1538
AxyI	CCTNAGG	1 cut(s)	1233
BaeGI	GKGCMC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	747
BarI	GAAGNNNNNNTAC	4 cut(s)	617, 649, 674, 706
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	7 cut(s)	1129, 1138, 1141, 1318, 1321, 1422, 1592
BccI	CCATC	1 cut(s)	1553
BceAI	ACGGC	2 cut(s)	870, 1266
BciT130I	CCWGG	4 cut(s)	1132, 1215, 1323, 1377
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	2 cut(s)	25, 209
BcoDI	GTCTC	7 cut(s)	307, 377, 414, 430, 464, 1179, 1215
BcuI	ACTAGT	1 cut(s)	1201
BfaI	CTAG	6 cut(s)	47, 452, 545, 1202, 1275, 1290
BfmI	CTRYAG	1 cut(s)	1481
BfrI	CTTAAG	1 cut(s)	1517
BfuAI	ACCTGC	1 cut(s)	983
BglI	GCCNNNNNGGC	1 cut(s)	1388
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	9 cut(s)	1143, 1152, 1155, 1224, 1307, 1310, 1332, 1411, 1581
BlpI	GCTNAGC	1 cut(s)	1406
BlsI	GCNGC	9 cut(s)	1144, 1153, 1156, 1225, 1308, 1311, 1333, 1412, 1582
Bme1390I	CCNGG	6 cut(s)	25, 209, 1132, 1215, 1323, 1377
Bme18I	GGWCC	1 cut(s)	1538
BmgT120I	GGNCC	3 cut(s)	1380, 1444, 1538
BmiI	GGNNCC	3 cut(s)	1136, 1381, 1539
BmrFI	CCNGG	6 cut(s)	25, 209, 1132, 1215, 1323, 1377
BmsI	GCATC	4 cut(s)	826, 1045, 1166, 1559
BoxI	GACNNNNGTC	1 cut(s)	1536
BpmI	CTGGAG	1 cut(s)	1460
Bpu10I	CCTNAGC	1 cut(s)	1086
Bpu1102I	GCTNAGC	1 cut(s)	1406
BpuMI	CCSGG	2 cut(s)	25, 209
Bsa29I	ATCGAT	2 cut(s)	826, 1160
BsaAI	YACGTR	2 cut(s)	740, 1632
BsaBI	GATNNNNATC	2 cut(s)	1059, 1419
BsaHI	GRCGYC	2 cut(s)	113, 1609
BsaI	GGTCTC	3 cut(s)	307, 377, 1215
BsaJI	CCNNGG	5 cut(s)	196, 216, 1321, 1375, 1376
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 1013, 1398
Bse21I	CCTNAGG	1 cut(s)	1233
Bse3DI	GCAATG	2 cut(s)	102, 777
Bse8I	GATNNNNATC	2 cut(s)	1059, 1419
BseBI	CCWGG	4 cut(s)	1132, 1215, 1323, 1377
BseCI	ATCGAT	2 cut(s)	826, 1160
BseDI	CCNNGG	5 cut(s)	196, 216, 1321, 1375, 1376
BseGI	GGATG	1 cut(s)	1564
BseJI	GATNNNNATC	2 cut(s)	1059, 1419
BseLI	CCNNNNNNNGG	3 cut(s)	24, 1013, 1398
BseMI	GCAATG	2 cut(s)	102, 777
BseMII	CTCAG	7 cut(s)	374, 522, 1100, 1247, 1364, 1397, 1425
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	7 cut(s)	1129, 1138, 1141, 1318, 1321, 1422, 1592
BsgI	GTGCAG	1 cut(s)	713
BshFI	GGCC	4 cut(s)	506, 1382, 1391, 1445
BshVI	ATCGAT	2 cut(s)	826, 1160
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	3 cut(s)	24, 92, 208
BslFI	GGGAC	5 cut(s)	624, 674, 1030, 1084, 1358
BslI	CCNNNNNNNGG	3 cut(s)	24, 1013, 1398
BsmAI	GTCTC	7 cut(s)	307, 377, 414, 430, 464, 1179, 1215
BsmFI	GGGAC	5 cut(s)	624, 674, 1030, 1084, 1358
BsmI	GAATGC	1 cut(s)	945
BsnI	GGCC	4 cut(s)	506, 1382, 1391, 1445
Bso31I	GGTCTC	3 cut(s)	307, 377, 1215
Bsp1286I	GDGCHC	2 cut(s)	402, 747
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	8 cut(s)	120, 189, 200, 336, 823, 950, 1414, 1618
Bsp1720I	GCTNAGC	1 cut(s)	1406
BspACI	CCGC	5 cut(s)	247, 921, 1032, 1223, 1307
BspANI	GGCC	4 cut(s)	506, 1382, 1391, 1445
BspCNI	CTCAG	7 cut(s)	373, 521, 1099, 1246, 1363, 1398, 1426
BspDI	ATCGAT	2 cut(s)	826, 1160
BspHI	TCATGA	1 cut(s)	1612
BspLI	GGNNCC	3 cut(s)	1136, 1381, 1539
BspMAI	CTGCAG	1 cut(s)	1485
BspMI	ACCTGC	1 cut(s)	983
BspPI	GGATC	2 cut(s)	208, 1409
BspQI	GCTCTTC	1 cut(s)	843
BspTI	CTTAAG	1 cut(s)	1517
BspTNI	GGTCTC	3 cut(s)	307, 377, 1215
BsrDI	GCAATG	2 cut(s)	102, 777
BsrGI	TGTACA	1 cut(s)	468
BssECI	CCNNGG	5 cut(s)	196, 216, 1321, 1375, 1376
BssMI	GATC	8 cut(s)	120, 189, 200, 336, 823, 950, 1414, 1618
BssNI	GRCGYC	2 cut(s)	113, 1609
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	4 cut(s)	1132, 1215, 1323, 1377
Bst4CI	ACNGT	4 cut(s)	473, 559, 1013, 1050
Bst6I	CTCTTC	4 cut(s)	359, 524, 843, 885
BstACI	GRCGYC	2 cut(s)	113, 1609
BstAFI	CTTAAG	1 cut(s)	1517
BstAUI	TGTACA	1 cut(s)	468
BstBAI	YACGTR	2 cut(s)	740, 1632
BstC8I	GCNNGC	2 cut(s)	1030, 1314
BstDEI	CTNAG	7 cut(s)	360, 508, 1086, 1233, 1350, 1406, 1434
BstF5I	GGATG	1 cut(s)	1564
BstKTI	GATC	8 cut(s)	123, 192, 203, 339, 826, 953, 1417, 1621
BstMAI	GTCTC	7 cut(s)	307, 377, 414, 430, 464, 1179, 1215
BstMBI	GATC	8 cut(s)	120, 189, 200, 336, 823, 950, 1414, 1618
BstNI	CCWGG	4 cut(s)	1132, 1215, 1323, 1377
BstNSI	RCATGY	2 cut(s)	601, 1369
BstPAI	GACNNNNGTC	1 cut(s)	1536
BstSCI	CCNGG	6 cut(s)	23, 207, 1130, 1213, 1321, 1375
BstSFI	CTRYAG	1 cut(s)	1481
BstSLI	GKGCMC	1 cut(s)	402
BstSNI	TACGTA	1 cut(s)	1632
BstV1I	GCAGC	7 cut(s)	1129, 1138, 1141, 1318, 1321, 1422, 1592
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu15I	ATCGAT	2 cut(s)	826, 1160
Bsu36I	CCTNAGG	1 cut(s)	1233
BsuRI	GGCC	4 cut(s)	506, 1382, 1391, 1445
BsuTUI	ATCGAT	2 cut(s)	826, 1160
BtsCI	GGATG	1 cut(s)	1564
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	3 cut(s)	564, 725, 1018
BveI	ACCTGC	1 cut(s)	983
Cac8I	GCNNGC	2 cut(s)	1030, 1314
CaiI	CAGNNNCTG	1 cut(s)	1433
CciI	TCATGA	1 cut(s)	1612
Cfr13I	GGNCC	3 cut(s)	1380, 1444, 1538
ClaI	ATCGAT	2 cut(s)	826, 1160
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	7 cut(s)	165, 376, 469, 535, 1001, 1023, 1238
CspCI	CAANNNNNGTGG	2 cut(s)	714, 749
CviQI	GTAC	7 cut(s)	165, 376, 469, 535, 1001, 1023, 1238
DdeI	CTNAG	7 cut(s)	360, 508, 1086, 1233, 1350, 1406, 1434
DpnI	GATC	8 cut(s)	122, 191, 202, 338, 825, 952, 1416, 1620
DpnII	GATC	8 cut(s)	120, 189, 200, 336, 823, 950, 1414, 1618
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	4 cut(s)	359, 524, 843, 885
EarI	CTCTTC	4 cut(s)	359, 524, 843, 885
EciI	GGCGGA	1 cut(s)	1047
Ecl136II	GAGCTC	1 cut(s)	745
Eco105I	TACGTA	1 cut(s)	1632
Eco130I	CCWWGG	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	506
Eco24I	GRGCYC	1 cut(s)	747
Eco31I	GGTCTC	3 cut(s)	307, 377, 1215
Eco47I	GGWCC	1 cut(s)	1538
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	2 cut(s)	867, 1445
Eco81I	CCTNAGG	1 cut(s)	1233
EcoICRI	GAGCTC	1 cut(s)	745
EcoRII	CCWGG	4 cut(s)	1130, 1213, 1321, 1375
EcoT14I	CCWWGG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	196
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 1537, 1569
FaqI	GGGAC	5 cut(s)	624, 674, 1030, 1084, 1358
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	336
FblI	GTMKAC	2 cut(s)	110, 633
Fnu4HI	GCNGC	9 cut(s)	1143, 1152, 1155, 1224, 1307, 1310, 1332, 1411, 1581
FokI	GGATG	1 cut(s)	1571
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	9 cut(s)	1143, 1152, 1155, 1224, 1307, 1310, 1332, 1411, 1581
FspBI	CTAG	6 cut(s)	47, 452, 545, 1202, 1275, 1290
GluI	GCNGC	9 cut(s)	1143, 1152, 1155, 1224, 1307, 1310, 1332, 1411, 1581
GsuI	CTGGAG	1 cut(s)	1460
HaeIII	GGCC	4 cut(s)	506, 1382, 1391, 1445
HapII	CCGG	3 cut(s)	24, 92, 208
HgaI	GACGC	1 cut(s)	875
Hin1I	GRCGYC	2 cut(s)	113, 1609
HincII	GTYRAC	2 cut(s)	111, 564
HindII	GTYRAC	2 cut(s)	111, 564
HindIII	AAGCTT	2 cut(s)	770, 1284
HinfI	GANTC	4 cut(s)	828, 1256, 1271, 1486
HpaII	CCGG	3 cut(s)	24, 92, 208
HphI	GGTGA	2 cut(s)	799, 1118
Hpy166II	GTNNAC	8 cut(s)	111, 165, 564, 634, 1046, 1295, 1531, 1607
Hpy188I	TCNGA	7 cut(s)	363, 420, 1054, 1139, 1425, 1435, 1600
Hpy188III	TCNNGA	4 cut(s)	452, 659, 1007, 1613
Hpy8I	GTNNAC	8 cut(s)	111, 165, 564, 634, 1046, 1295, 1531, 1607
Hpy99I	CGWCG	2 cut(s)	115, 118
HpyAV	CCTTC	4 cut(s)	402, 1197, 1354, 1596
HpyCH4III	ACNGT	4 cut(s)	473, 559, 1013, 1050
HpyCH4IV	ACGT	5 cut(s)	113, 638, 739, 1609, 1631
HpyF3I	CTNAG	7 cut(s)	360, 508, 1086, 1233, 1350, 1406, 1434
HpySE526I	ACGT	5 cut(s)	113, 638, 739, 1609, 1631
Hsp92I	GRCGYC	2 cut(s)	113, 1609
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	8 cut(s)	120, 189, 200, 336, 823, 950, 1414, 1618
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	4 cut(s)	1140, 1328, 1497, 1588
Lsp1109I	GCAGC	7 cut(s)	1129, 1138, 1141, 1318, 1321, 1422, 1592
LweI	GCATC	4 cut(s)	826, 1045, 1166, 1559
MaeI	CTAG	6 cut(s)	47, 452, 545, 1202, 1275, 1290
MaeII	ACGT	5 cut(s)	113, 638, 739, 1609, 1631
MaeIII	GTNAC	3 cut(s)	319, 589, 863
MalI	GATC	8 cut(s)	122, 191, 202, 338, 825, 952, 1416, 1620
MboI	GATC	8 cut(s)	120, 189, 200, 336, 823, 950, 1414, 1618
MfeI	CAATTG	1 cut(s)	176
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	2 cut(s)	402, 747
MluCI	AATT	3 cut(s)	176, 702, 870
MlyI	GAGTC	1 cut(s)	1250
MmeI	TCCRAC	1 cut(s)	1565
Mph1103I	ATGCAT	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	4 cut(s)	231, 768, 855, 1518
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	1028
MspCI	CTTAAG	1 cut(s)	1517
MspI	CCGG	3 cut(s)	24, 92, 208
MspR9I	CCNGG	6 cut(s)	25, 209, 1132, 1215, 1323, 1377
MunI	CAATTG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	945
MvaI	CCWGG	4 cut(s)	1132, 1215, 1323, 1377
NciI	CCSGG	2 cut(s)	25, 209
NdeII	GATC	8 cut(s)	120, 189, 200, 336, 823, 950, 1414, 1618
NlaIV	GGNNCC	3 cut(s)	1136, 1381, 1539
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	863
NsiI	ATGCAT	1 cut(s)	67
NspI	RCATGY	2 cut(s)	601, 1369
PagI	TCATGA	1 cut(s)	1612
PasI	CCCWGGG	1 cut(s)	1376
PceI	AGGCCT	1 cut(s)	506
PciI	ACATGT	1 cut(s)	1365
PciSI	GCTCTTC	1 cut(s)	843
PctI	GAATGC	1 cut(s)	945
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	3 cut(s)	828, 1271, 1486
PfoI	TCCNGGA	2 cut(s)	207, 1213
PkrI	GCNGC	9 cut(s)	1144, 1153, 1156, 1225, 1308, 1311, 1333, 1412, 1582
PleI	GAGTC	1 cut(s)	1250
PpsI	GAGTC	1 cut(s)	1250
Ppu21I	YACGTR	2 cut(s)	740, 1632
PscI	ACATGT	1 cut(s)	1365
PshAI	GACNNNNGTC	1 cut(s)	1536
Psp124BI	GAGCTC	1 cut(s)	747
Psp6I	CCWGG	4 cut(s)	1130, 1213, 1321, 1375
PspGI	CCWGG	4 cut(s)	1130, 1213, 1321, 1375
PspN4I	GGNNCC	3 cut(s)	1136, 1381, 1539
PspPI	GGNCC	3 cut(s)	1380, 1444, 1538
PstI	CTGCAG	1 cut(s)	1485
PstNI	CAGNNNCTG	1 cut(s)	1433
PsuI	RGATCY	1 cut(s)	189
PvuII	CAGCTG	1 cut(s)	1028
RsaI	GTAC	7 cut(s)	166, 377, 470, 536, 1002, 1024, 1239
RsaNI	GTAC	7 cut(s)	165, 376, 469, 535, 1001, 1023, 1238
RseI	CAYNNNNRTG	1 cut(s)	602
SacI	GAGCTC	1 cut(s)	747
SalI	GTCGAC	1 cut(s)	109
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	4 cut(s)	231, 768, 855, 1518
SatI	GCNGC	9 cut(s)	1143, 1152, 1155, 1224, 1307, 1310, 1332, 1411, 1581
Sau3AI	GATC	8 cut(s)	120, 189, 200, 336, 823, 950, 1414, 1618
Sau96I	GGNCC	3 cut(s)	1380, 1444, 1538
SchI	GAGTC	1 cut(s)	1250
ScrFI	CCNGG	6 cut(s)	25, 209, 1132, 1215, 1323, 1377
SduI	GDGCHC	2 cut(s)	402, 747
SfaNI	GCATC	4 cut(s)	826, 1045, 1166, 1559
SfcI	CTRYAG	1 cut(s)	1481
SfiI	GGCCNNNNNGGCC	1 cut(s)	1388
SinI	GGWCC	1 cut(s)	1538
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	1517
SmoI	CTYRAG	1 cut(s)	1517
SnaBI	TACGTA	1 cut(s)	1632
SpeI	ACTAGT	1 cut(s)	1201
Sse9I	AATT	3 cut(s)	176, 702, 870
SseBI	AGGCCT	1 cut(s)	506
SsiI	CCGC	5 cut(s)	247, 921, 1032, 1223, 1307
SspMI	CTAG	6 cut(s)	47, 452, 545, 1202, 1275, 1290
SstI	GAGCTC	1 cut(s)	747
StuI	AGGCCT	1 cut(s)	506
StyD4I	CCNGG	6 cut(s)	23, 207, 1130, 1213, 1321, 1375
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	4 cut(s)	473, 559, 1013, 1050
TaiI	ACGT	5 cut(s)	116, 641, 742, 1612, 1634
TaqI	TCGA	7 cut(s)	110, 116, 531, 799, 826, 949, 1160
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	3 cut(s)	176, 702, 870
TatI	WGTACW	4 cut(s)	164, 375, 468, 534
TauI	GCSGC	2 cut(s)	1226, 1309
TfiI	GAWTC	3 cut(s)	828, 1271, 1486
Tru1I	TTAA	4 cut(s)	231, 768, 855, 1518
Tru9I	TTAA	4 cut(s)	231, 768, 855, 1518
TscAI	CASTG	3 cut(s)	564, 732, 1018
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	7 cut(s)	1142, 1151, 1154, 1309, 1331, 1410, 1580
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	9 cut(s)	20, 516, 659, 765, 833, 923, 1140, 1578, 1629
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	3 cut(s)	564, 732, 1018
Vha464I	CTTAAG	1 cut(s)	1517
VpaK11BI	GGWCC	1 cut(s)	1538
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	2 cut(s)	601, 1369
XmiI	GTMKAC	2 cut(s)	110, 633
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	6 cut(s)	47, 452, 545, 1202, 1275, 1290
ZraI	GACGTC	2 cut(s)	114, 1610
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.