pycom07g28030

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
27530209 .. 27533171
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g28030.3

Sequence Viewer

Length: 1629 bp
ATGATGAAGCTGCAAACCTATGCCGGGATTAGTTTGGTAGCAACCCTAGCGATTGTTTATCATGCATTTAGCAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATTTGTCGACGTCGAAGATCAGCTTGGTGTTGCTTCTCAACATGGGTCTGGTCATTATGTGTACTATGTGGCAATTGACTAAAAAGCTCTTCCTTGGATCACTCCGGGAAGCCGAGGTTGAGAGGCTTAATGAGCAGTCGTGGCGGGAAGTCATGGAAATCCTCTTTGCCATCACTATTTTCAGGCAGGACTTTTCGGTCTTGTTTCTTGCTATGGTTACGGCTCTGTTGTTGATCAAGGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAGTACATCGAGACTACTCCGTCTGTGCCCATGCTGTCTCATGTTCGAATTGTCTCCTTTTTGGGTTTCTTGCTTGTTCTAGATAGTCTCTTTTTGTACAGTTCAATTAGCAACTTGATAAGGACACAAAAGGCCTCGGTTTCCCTCTTCTTTTCGTTCGAGTACATGATACTAGCAACAACAACAGTGTCAACATTTGTGAAATATGTTTTCTATGTTACTGACATGCTTATGGAGGGACAATGGGAGAAGAAGCCTGTCTACACGTTCTACTTGGAACTTATTCGGGACTTGCTTCACTTGTCTCTGTATTTGTGCTTCTTCCTTGTGATTTTCACGTACTATGGTGTGCCATTGCACTTGATACGTGAGCTCTATGAAACATTTAGGAATTTTAAGATTCGCATTGCTGATTATATTCGTTATCGAAAGCTCACATCAAACATGAATGATCGATTCCCAGATGCTACGCCTGAAGAGCTTAATGCAAGTGATGCAACTTGTATCATTTGCCGTGAAGAGATGACAACAGCCAAGAAACTATTATGTGGACACCTTTTTCATGTCGCTTGCCTTCGATCATGGTTAGAGCGACAGCATACCTGCCCTACTTGCAGAGCCCTAGTTGTACCTCCTGACAGTGGAACTGGTACAGCTGGACAGAGGGGTTCACAGTCAGATGCTCACCAACAGGGCACAACGGCTCAGGGTGGTGGAGTTGCTGGTGATAATGTGAGCCAACATGAAGCCAGGCTCCGAGCTGCTGCTGCTGCTGCATCAATATATGAGAAGTCTTATGTATATCCTTCTGCAAACAGACTAGTATGGTCTCCTGGATATACGGCAATTCCTCAGGTTCAAAGACATACGGCTGACTACTCCTCTAATACTGAATCTAGTGGAGAATCTTCTATTGGACAATCACTGCCACAACTTGCAGCCCAAGGTGGAGCTGCAAACTTGTCCTTCTCTCAGTTTCCACCTTACATGTTTGTCCCCGGAGCCAACGTGGCCTATGGGGAGAGGTTGGGCAGCGATCCAAATCTGACAGCTTCTCGGCTGGAGGCCCAGAAAAAGCTTCTTCAGCACCAGATTGAGATGCTGCAGAATCAGCTCCAAGTTTTACAGAAACCAAAACCAAATGAAAGTGTGGACATGGGTCCAACAACGGCATCTTTGGATGGCAAAGGAAAGAGTGTCGCAGCTTGTTCGTCTGTTTCAGACTGTGGACGTCATGAAGATCGGGTTGATTCGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

543

Amino Acids

60.72

Weight (kDa)

8.21

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 299, 391
AatII GACGTC 2 cut(s) 116, 1606
Acc36I ACCTGC 1 cut(s) 983
AccI GTMKAC 2 cut(s) 110, 633
AciI CCGC 1 cut(s) 247
AclWI GGATC 2 cut(s) 208, 1403
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 2 cut(s) 867, 1439
AcyI GRCGYC 2 cut(s) 113, 1603
AfaI GTAC 7 cut(s) 166, 377, 470, 536, 713, 1002, 1024
AfiI CCNNNNNNNGG 2 cut(s) 24, 1013
AflIII ACRYGT 2 cut(s) 636, 1359
AgsI TTSAA 2 cut(s) 477, 1232
AhlI ACTAGT 1 cut(s) 1192
AjnI CCWGG 2 cut(s) 1121, 1204
AjuI GAANNNNNNNTTGG 4 cut(s) 110, 142, 1269, 1301
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 6 cut(s) 377, 414, 430, 464, 681, 1206
AlwI GGATC 2 cut(s) 208, 1403
AoxI GGCC 4 cut(s) 79, 504, 1383, 1437
ApoI RAATTY 1 cut(s) 763
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 2 cut(s) 1438, 1532
AsuC2I CCSGG 3 cut(s) 25, 209, 1371
AsuHPI GGTGA 2 cut(s) 1049, 1109
AsuII TTCGAA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 1532
AxyI CCTNAGG 1 cut(s) 1224
BaeGI GKGCMC 2 cut(s) 402, 1070
BanII GRGCYC 2 cut(s) 747, 994
BarI GAAGNNNNNNTAC 4 cut(s) 617, 649, 674, 706
Bbv12I GWGCWC 1 cut(s) 747
BccI CCATC 2 cut(s) 281, 1547
BceAI ACGGC 6 cut(s) 339, 870, 1089, 1230, 1257, 1557
BcgI CGANNNNNNTGC 2 cut(s) 1563, 1597
BciT130I CCWGG 2 cut(s) 1123, 1206
BclI TGATCA 1 cut(s) 336
BcnI CCSGG 3 cut(s) 25, 209, 1371
BcoDI GTCTC 6 cut(s) 377, 414, 430, 464, 681, 1206
BcuI ACTAGT 1 cut(s) 1192
BfaI CTAG 6 cut(s) 47, 452, 545, 995, 1193, 1269
BfmI CTRYAG 1 cut(s) 1475
BfuAI ACCTGC 1 cut(s) 983
BglI GCCNNNNNGGC 1 cut(s) 1382
Bme1390I CCNGG 5 cut(s) 25, 209, 1123, 1206, 1371
Bme18I GGWCC 1 cut(s) 1532
BmgT120I GGNCC 2 cut(s) 1438, 1532
BmiI GGNNCC 3 cut(s) 1127, 1375, 1533
BmrFI CCNGG 5 cut(s) 25, 209, 1123, 1206, 1371
BmsI GCATC 6 cut(s) 826, 856, 1042, 1157, 1461, 1553
BoxI GACNNNNGTC 1 cut(s) 1530
BpmI CTGGAG 1 cut(s) 1454
Bpu10I CCTNAGC 1 cut(s) 1077
Bpu14I TTCGAA 1 cut(s) 418
BpuMI CCSGG 3 cut(s) 25, 209, 1371
Bsa29I ATCGAT 1 cut(s) 826
BsaAI YACGTR 2 cut(s) 711, 740
BsaBI GATNNNNATC 1 cut(s) 1413
BsaHI GRCGYC 2 cut(s) 113, 1603
BsaI GGTCTC 1 cut(s) 1206
BsaJI CCNNGG 5 cut(s) 196, 216, 507, 1315, 1369
BsaXI ACNNNNNCTCC 2 cut(s) 1365, 1395
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 1013
Bse1I ACTGG 2 cut(s) 82, 1024
Bse21I CCTNAGG 1 cut(s) 1224
Bse3DI GCAATG 3 cut(s) 102, 725, 777
Bse8I GATNNNNATC 1 cut(s) 1413
BseBI CCWGG 2 cut(s) 1123, 1206
BseCI ATCGAT 1 cut(s) 826
BseDI CCNNGG 5 cut(s) 196, 216, 507, 1315, 1369
BseGI GGATG 1 cut(s) 1558
BseJI GATNNNNATC 1 cut(s) 1413
BseLI CCNNNNNNNGG 2 cut(s) 24, 1013
BseMI GCAATG 3 cut(s) 102, 725, 777
BseMII CTCAG 4 cut(s) 374, 1091, 1238, 1358
BseNI ACTGG 2 cut(s) 82, 1024
BseRI GAGGAG 1 cut(s) 1243
BseSI GKGCMC 2 cut(s) 402, 1070
BshFI GGCC 4 cut(s) 81, 506, 1385, 1439
BshVI ATCGAT 1 cut(s) 826
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 4 cut(s) 24, 92, 208, 1371
BslFI GGGAC 3 cut(s) 624, 674, 1352
BslI CCNNNNNNNGG 2 cut(s) 24, 1013
BsmAI GTCTC 6 cut(s) 377, 414, 430, 464, 681, 1206
BsmFI GGGAC 3 cut(s) 624, 674, 1352
BsnI GGCC 4 cut(s) 81, 506, 1385, 1439
Bso31I GGTCTC 1 cut(s) 1206
Bsp119I TTCGAA 1 cut(s) 418
Bsp1286I GDGCHC 4 cut(s) 402, 747, 994, 1070
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 7 cut(s) 120, 200, 336, 823, 950, 1408, 1612
BspACI CCGC 1 cut(s) 247
BspANI GGCC 4 cut(s) 81, 506, 1385, 1439
BspCNI CTCAG 4 cut(s) 373, 1090, 1237, 1357
BspDI ATCGAT 1 cut(s) 826
BspHI TCATGA 1 cut(s) 1606
BspLI GGNNCC 3 cut(s) 1127, 1375, 1533
BspMAI CTGCAG 1 cut(s) 1479
BspMI ACCTGC 1 cut(s) 983
BspPI GGATC 2 cut(s) 208, 1403
BspQI GCTCTTC 2 cut(s) 197, 843
BspT104I TTCGAA 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 1206
BsrDI GCAATG 3 cut(s) 102, 725, 777
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 2 cut(s) 82, 1024
BssECI CCNNGG 5 cut(s) 196, 216, 507, 1315, 1369
BssMI GATC 7 cut(s) 120, 200, 336, 823, 950, 1408, 1612
BssNI GRCGYC 2 cut(s) 113, 1603
BssT1I CCWWGG 2 cut(s) 196, 1315
Bst2UI CCWGG 2 cut(s) 1123, 1206
Bst4CI ACNGT 5 cut(s) 473, 559, 1013, 1047, 1598
Bst6I CTCTTC 5 cut(s) 197, 359, 524, 843, 885
BstACI GRCGYC 2 cut(s) 113, 1603
BstAPI GCANNNNNTGC 1 cut(s) 866
BstAUI TGTACA 1 cut(s) 468
BstBAI YACGTR 2 cut(s) 711, 740
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 943
BstDEI CTNAG 4 cut(s) 360, 1077, 1224, 1344
BstF5I GGATG 1 cut(s) 1558
BstKTI GATC 7 cut(s) 123, 203, 339, 826, 953, 1411, 1615
BstMAI GTCTC 6 cut(s) 377, 414, 430, 464, 681, 1206
BstMBI GATC 7 cut(s) 120, 200, 336, 823, 950, 1408, 1612
BstNI CCWGG 2 cut(s) 1123, 1206
BstNSI RCATGY 2 cut(s) 601, 1363
BstPAI GACNNNNGTC 1 cut(s) 1530
BstSCI CCNGG 5 cut(s) 23, 207, 1121, 1204, 1369
BstSFI CTRYAG 1 cut(s) 1475
BstSLI GKGCMC 2 cut(s) 402, 1070
Bsu15I ATCGAT 1 cut(s) 826
Bsu36I CCTNAGG 1 cut(s) 1224
BsuRI GGCC 4 cut(s) 81, 506, 1385, 1439
BsuTUI ATCGAT 1 cut(s) 826
BtsCI GGATG 1 cut(s) 1558
BtsI GCAGTG 1 cut(s) 1295
BtsIMutI CAGTG 3 cut(s) 564, 1018, 1295
BveI ACCTGC 1 cut(s) 983
Cac8I GCNNGC 1 cut(s) 943
CciI TCATGA 1 cut(s) 1606
Cfr13I GGNCC 2 cut(s) 1438, 1532
ClaI ATCGAT 1 cut(s) 826
Csp6I GTAC 7 cut(s) 165, 376, 469, 535, 712, 1001, 1023
CviQI GTAC 7 cut(s) 165, 376, 469, 535, 712, 1001, 1023
DdeI CTNAG 4 cut(s) 360, 1077, 1224, 1344
DpnI GATC 7 cut(s) 122, 202, 338, 825, 952, 1410, 1614
DpnII GATC 7 cut(s) 120, 200, 336, 823, 950, 1408, 1612
DrdI GACNNNNNNGTC 2 cut(s) 299, 391
DseDI GACNNNNNNGTC 2 cut(s) 299, 391
Eam1104I CTCTTC 5 cut(s) 197, 359, 524, 843, 885
EarI CTCTTC 5 cut(s) 197, 359, 524, 843, 885
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 2 cut(s) 196, 1315
Eco147I AGGCCT 1 cut(s) 506
Eco24I GRGCYC 2 cut(s) 747, 994
Eco31I GGTCTC 1 cut(s) 1206
Eco47I GGWCC 1 cut(s) 1532
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 2 cut(s) 867, 1439
Eco81I CCTNAGG 1 cut(s) 1224
EcoICRI GAGCTC 1 cut(s) 745
EcoRII CCWGG 2 cut(s) 1121, 1204
EcoT14I CCWWGG 2 cut(s) 196, 1315
EcoT22I ATGCAT 1 cut(s) 67
EcoT38I GRGCYC 2 cut(s) 747, 994
ErhI CCWWGG 2 cut(s) 196, 1315
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 3 cut(s) 624, 674, 1352
FauI CCCGC 1 cut(s) 240
FbaI TGATCA 1 cut(s) 336
FblI GTMKAC 2 cut(s) 110, 633
FokI GGATG 1 cut(s) 1565
FriOI GRGCYC 2 cut(s) 747, 994
FspBI CTAG 6 cut(s) 47, 452, 545, 995, 1193, 1269
GsuI CTGGAG 1 cut(s) 1454
HaeIII GGCC 4 cut(s) 81, 506, 1385, 1439
HapII CCGG 4 cut(s) 24, 92, 208, 1371
Hin1I GRCGYC 2 cut(s) 113, 1603
HincII GTYRAC 2 cut(s) 111, 564
HindII GTYRAC 2 cut(s) 111, 564
HindIII AAGCTT 1 cut(s) 1448
HinfI GANTC 6 cut(s) 772, 828, 1265, 1277, 1480, 1622
HpaII CCGG 4 cut(s) 24, 92, 208, 1371
HphI GGTGA 2 cut(s) 1049, 1109
Hpy166II GTNNAC 8 cut(s) 111, 165, 564, 634, 923, 1043, 1525, 1601
Hpy188I TCNGA 5 cut(s) 363, 1051, 1130, 1419, 1594
Hpy188III TCNNGA 5 cut(s) 382, 452, 659, 1007, 1607
Hpy8I GTNNAC 8 cut(s) 111, 165, 564, 634, 923, 1043, 1525, 1601
Hpy99I CGWCG 2 cut(s) 115, 118
HpyAV CCTTC 3 cut(s) 956, 1188, 1348
HpyCH4III ACNGT 5 cut(s) 473, 559, 1013, 1047, 1598
HpyCH4IV ACGT 6 cut(s) 113, 638, 710, 739, 1380, 1603
HpyF3I CTNAG 4 cut(s) 360, 1077, 1224, 1344
HpySE526I ACGT 6 cut(s) 113, 638, 710, 739, 1380, 1603
Hsp92I GRCGYC 2 cut(s) 113, 1603
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 7 cut(s) 120, 200, 336, 823, 950, 1408, 1612
LguI GCTCTTC 2 cut(s) 197, 843
LmnI GCTCC 4 cut(s) 1131, 1322, 1373, 1491
LweI GCATC 6 cut(s) 826, 856, 1042, 1157, 1461, 1553
MaeI CTAG 6 cut(s) 47, 452, 545, 995, 1193, 1269
MaeII ACGT 6 cut(s) 113, 638, 710, 739, 1380, 1603
MaeIII GTNAC 2 cut(s) 319, 589
MalI GATC 7 cut(s) 122, 202, 338, 825, 952, 1410, 1614
MboI GATC 7 cut(s) 120, 200, 336, 823, 950, 1408, 1612
MfeI CAATTG 1 cut(s) 176
MhlI GDGCHC 4 cut(s) 402, 747, 994, 1070
MluCI AATT 5 cut(s) 176, 420, 477, 763, 1218
MmeI TCCRAC 1 cut(s) 1559
Mph1103I ATGCAT 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 3 cut(s) 231, 768, 855
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 4 cut(s) 24, 92, 208, 1371
MspR9I CCNGG 5 cut(s) 25, 209, 1123, 1206, 1371
MunI CAATTG 1 cut(s) 176
MvaI CCWGG 2 cut(s) 1123, 1206
NciI CCSGG 3 cut(s) 25, 209, 1371
NdeII GATC 7 cut(s) 120, 200, 336, 823, 950, 1408, 1612
NlaIV GGNNCC 3 cut(s) 1127, 1375, 1533
NmeAIII GCCGAG 2 cut(s) 241, 1408
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 2 cut(s) 601, 1363
NspV TTCGAA 1 cut(s) 418
PagI TCATGA 1 cut(s) 1606
PceI AGGCCT 1 cut(s) 506
PciI ACATGT 1 cut(s) 1359
PciSI GCTCTTC 2 cut(s) 197, 843
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 6 cut(s) 772, 828, 1265, 1277, 1480, 1622
PfoI TCCNGGA 2 cut(s) 207, 1204
Ppu21I YACGTR 2 cut(s) 711, 740
PscI ACATGT 1 cut(s) 1359
PshAI GACNNNNGTC 1 cut(s) 1530
Psp124BI GAGCTC 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 1121, 1204
PspGI CCWGG 2 cut(s) 1121, 1204
PspN4I GGNNCC 3 cut(s) 1127, 1375, 1533
PspPI GGNCC 2 cut(s) 1438, 1532
PstI CTGCAG 1 cut(s) 1479
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 7 cut(s) 166, 377, 470, 536, 713, 1002, 1024
RsaNI GTAC 7 cut(s) 165, 376, 469, 535, 712, 1001, 1023
RseI CAYNNNNRTG 1 cut(s) 602
SacI GAGCTC 1 cut(s) 747
SalI GTCGAC 1 cut(s) 109
SapI GCTCTTC 2 cut(s) 197, 843
SaqAI TTAA 3 cut(s) 231, 768, 855
Sau3AI GATC 7 cut(s) 120, 200, 336, 823, 950, 1408, 1612
Sau96I GGNCC 2 cut(s) 1438, 1532
ScrFI CCNGG 5 cut(s) 25, 209, 1123, 1206, 1371
SduI GDGCHC 4 cut(s) 402, 747, 994, 1070
SfaNI GCATC 6 cut(s) 826, 856, 1042, 1157, 1461, 1553
SfcI CTRYAG 1 cut(s) 1475
SfuI TTCGAA 1 cut(s) 418
SinI GGWCC 1 cut(s) 1532
SmiMI CAYNNNNRTG 1 cut(s) 602
SpeI ACTAGT 1 cut(s) 1192
Sse9I AATT 5 cut(s) 176, 420, 477, 763, 1218
SseBI AGGCCT 1 cut(s) 506
SsiI CCGC 1 cut(s) 247
SspMI CTAG 6 cut(s) 47, 452, 545, 995, 1193, 1269
SstI GAGCTC 1 cut(s) 747
StuI AGGCCT 1 cut(s) 506
StyD4I CCNGG 5 cut(s) 23, 207, 1121, 1204, 1369
StyI CCWWGG 2 cut(s) 196, 1315
TaaI ACNGT 5 cut(s) 473, 559, 1013, 1047, 1598
TaiI ACGT 6 cut(s) 116, 641, 713, 742, 1383, 1606
TaqI TCGA 8 cut(s) 110, 116, 381, 418, 531, 799, 826, 949
TaqII GACCGA 1 cut(s) 289
TasI AATT 5 cut(s) 176, 420, 477, 763, 1218
TatI WGTACW 4 cut(s) 164, 375, 468, 534
TfiI GAWTC 6 cut(s) 772, 828, 1265, 1277, 1480, 1622
Tru1I TTAA 3 cut(s) 231, 768, 855
Tru9I TTAA 3 cut(s) 231, 768, 855
TscAI CASTG 3 cut(s) 564, 1018, 1302
TspDTI ATGAA 7 cut(s) 20, 765, 833, 923, 1131, 1530, 1623
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 3 cut(s) 564, 1018, 1302
VpaK11BI GGWCC 1 cut(s) 1532
XapI RAATTY 1 cut(s) 763
XbaI TCTAGA 1 cut(s) 451
XceI RCATGY 2 cut(s) 601, 1363
XmiI GTMKAC 2 cut(s) 110, 633
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 6 cut(s) 47, 452, 545, 995, 1193, 1269
ZraI GACGTC 2 cut(s) 114, 1604
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.