Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003463

Physical Location & Seq

Genomic Coordinates Forward (+)

8834453 .. 8836942

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1104500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCAGAAACTTGATGGTAAGGATGCAAGGCTCGCAGATTCTTTTGATGTGATTACAGGGACTAGCACAGGTGGCCTTGTGACTGCTTTGGTTGCTATTAGCGAAGTGACAAAACAAATCCACAAGGGCAACCCTGAGTTCGTTCCTTTGAGTGTAAATGACAAGTTGTATGAGCGGTTCCTGGTTATATCACTGGGTACCGGTACAACATCTGAGGAGAAGTACGACGCCAAAGAAGCATCTGAGTGGGGTGCTTTGGGATGGTTGTTTGGATCTCATTTTTCAGCTCCTCTGGATGACACACTAACTGGAACACTGGCTTTTGTGGATATTGCTTCTTTGGAAAACTTGAATGGTCTCGTAATAGTTGGGGAGAAATTGTTAAAGAAATCAGTTCCAATAGTTGACTTTGATACTGCAAAAGCAAAGCTTGTTCATCCTGAAACTACAAATCAAGAGGCTCTCATAAGGTATTTAAATACAGTATACATACATCACGAAATCCACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

171

Amino Acids

18.55

Weight (kDa)

5.16

Isoelectric Point (pI)

12.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34810 FvH4_4g24290
malus_domestica	MD08G1100500.v1.1 MD08G1104500.v1.1 MD15G1085400.v1.1
prunus_persica	Prupe.1G439500_v2.0.a1 Prupe.1G439500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482861 RchiOBHm_Chr6g0307251 RchiOBHm_Chr6g0307311 RchiOBHm_Chr6g0307331 RchiOBHm_Chr6g0307501 RchiOBHm_Chr6g0307671
rosa_laevigata	RLG00000010710 RLG00000010723
rosa_multiflora	Rmu_co8330847.1_g000001 Rmu_sc0000031.1_g000021 Rmu_ssc0000175.1_g000027
rosa_roxburghii	Rroxscaffold_6G00398860 Rroxscaffold_7G00160970
rosa_rugosa	Rorug03G0201800 Rorug06G0358100 Rorug06G0358700 Rorug06G0358900
rosa_samantha	Rh3AG250500 Rh3BG286900 Rh3BG287000 Rh6AG468600 Rh6AG468800 Rh6BG431100 Rh6BG432000 Rh6BG479100 Rh6BG479400 Rh6CG484800
rosa_wichuraiana	Rw3G022660 Rw6G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	3 cut(s)	199, 205, 224
AgeI	ACCGGT	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	287, 430
AluI	AGCT	2 cut(s)	287, 430
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	1 cut(s)	73
AsiGI	ACCGGT	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	197
BccI	CCATC	2 cut(s)	8, 255
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	179, 199
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	13, 248
BmuI	ACTGGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	3 cut(s)	198, 313, 321
BseBI	CCWGG	1 cut(s)	182
BseGI	GGATG	4 cut(s)	28, 266, 301, 436
BseMII	CTCAG	3 cut(s)	126, 204, 234
BseNI	ACTGG	3 cut(s)	198, 313, 321
BseRI	GAGGAG	2 cut(s)	230, 279
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	197
BshTI	ACCGGT	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	272
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	3 cut(s)	127, 205, 235
BspLI	GGNNCC	2 cut(s)	179, 199
BspPI	GGATC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	198, 313, 321
BssAI	RCCGGY	1 cut(s)	200
BssMI	GATC	1 cut(s)	272
BssNAI	GTATAC	1 cut(s)	487
BssNI	GRCGYC	1 cut(s)	228
Bst1107I	GTATAC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	135, 213, 243
BstF5I	GGATG	4 cut(s)	28, 266, 301, 436
BstKTI	GATC	1 cut(s)	275
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 72, 92, 236
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BstZ17I	GTATAC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	28, 266, 301, 436
BtsIMutI	CAGTG	2 cut(s)	191, 314
Cac8I	GCNNGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	200
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	198, 204, 223
CspAI	ACCGGT	1 cut(s)	200
CviJI	RGCY	6 cut(s)	31, 75, 287, 320, 430, 461
CviKI_1	RGCY	6 cut(s)	31, 75, 287, 320, 430, 461
CviQI	GTAC	3 cut(s)	198, 204, 223
DdeI	CTNAG	3 cut(s)	135, 213, 243
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
DraI	TTTAAA	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	180
FaiI	YATR	5 cut(s)	171, 188, 467, 487, 491
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	486
FokI	GGATG	4 cut(s)	35, 273, 308, 423
FspBI	CTAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	406, 487
Hpy188I	TCNGA	2 cut(s)	214, 244
Hpy188III	TCNNGA	4 cut(s)	293, 440, 455, 497
Hpy8I	GTNNAC	2 cut(s)	406, 487
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	3 cut(s)	4, 26, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 72, 92, 236
HpyF3I	CTNAG	3 cut(s)	135, 213, 243
Hsp92I	GRCGYC	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	292
LweI	GCATC	2 cut(s)	13, 248
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	79, 106
MalI	GATC	1 cut(s)	274
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	1 cut(s)	272
MflI	RGATCY	1 cut(s)	272
MluCI	AATT	2 cut(s)	377, 508
MnlI	CCTC	3 cut(s)	208, 300, 451
MseI	TTAA	3 cut(s)	383, 476, 511
MslI	CAYNNNNRTG	1 cut(s)	244
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	4 cut(s)	32, 72, 92, 236
NdeII	GATC	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	179, 199
NmuCI	GTSAC	2 cut(s)	79, 106
PfeI	GAWTC	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	179, 199
PsrI	GAACNNNNNNTAC	2 cut(s)	161, 193
PsuI	RGATCY	1 cut(s)	272
RsaI	GTAC	3 cut(s)	199, 205, 224
RsaNI	GTAC	3 cut(s)	198, 204, 223
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	383, 476, 511
Sau3AI	GATC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	4 cut(s)	73, 289, 432, 473
SfaNI	GCATC	2 cut(s)	13, 248
SmiI	ATTTAAAT	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	244
Sse9I	AATT	2 cut(s)	377, 508
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	180
SwaI	ATTTAAAT	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	484
TasI	AATT	2 cut(s)	377, 508
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	383, 476, 511
Tru9I	TTAA	3 cut(s)	383, 476, 511
TscAI	CASTG	2 cut(s)	198, 321
TseFI	GTSAC	2 cut(s)	79, 106
Tsp45I	GTSAC	2 cut(s)	79, 106
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	2 cut(s)	198, 321
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.