Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000031.1

Orthogroup ID

OG0003463

Physical Location & Seq

Genomic Coordinates Reverse (-)

108211 .. 110292

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000031.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atggagaaagcaagtgcattcctttgccatccccctccctcacatggaaagctcatcactgttctcagcattgatggaggtggaatcaaagggattatccccgggactctgctcagcttcctagagtccgagctccagaagctggatggtgaagctgcaaggttggcagattatttcgatgttatagcagggactagcactggtggccttgtcaccgccatgcttaccgccccggatcaaaacaaccgtcccttgtttgcggctaaccagattgtcgatttttaccttgagcactgccctaaaatattccctcaaatcaatattccactgtttggtgacgccttagaaaatgcaaagggtgtatacgcaccaaaatatgatggcaagtatttacacaaacttatcaaggaaaaattaggagagagacgattgaaccagacattgaccaatgttgtgatcccaacttttgatataagttgcctccaaccagctatcttctccacctacgagttgaaaaggaacaagaaattagatccggctctactatcggatatatgcatcggaacttcagcagcaccaacttatcttccctcgcattatttcaaaaccgcaacaagagaattccatctcgttgatggcggtgtggctgctaataacccgggtttgactgctataaccgaagtgacaaaagaaatcaagaagggaaatgctgacttctctccggttgaggcagctgatcagggtaataggttcctcctcatatctttgggtactggttcatcagcaaaatccaagtacgatgccagagtagcagctaagtggggtattatggcatggttgatgcaagccaactttcaatgtccattgttagatgtactcactgaagcaagtagtgacatggtagattgccacctttctacccttttccaagctctttggtctgacgataactaccttcgaattcaggatgaccaattgagcaccgacttgaattctatggataatgctacgcccgaaaacttgaaaaaacttgtaaaagtgggagaggcactgttaaagaaacaagcttcaaagttgaatatagctacgggcctccatgagcctgatgaacgtcatattactaatgaagaggctctcagaagggtagcggcagttctctccaaagagaagaaggaacgtgcaatcagatcagcagcaccacaagcaaacccagcatctgccagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

408

Amino Acids

44.47

Weight (kDa)

6.33

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34810 FvH4_4g24290
malus_domestica	MD08G1100500.v1.1 MD08G1104500.v1.1 MD15G1085400.v1.1
prunus_persica	Prupe.1G439500_v2.0.a1 Prupe.1G439500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482861 RchiOBHm_Chr6g0307251 RchiOBHm_Chr6g0307311 RchiOBHm_Chr6g0307331 RchiOBHm_Chr6g0307501 RchiOBHm_Chr6g0307671
rosa_laevigata	RLG00000010710 RLG00000010723
rosa_multiflora	Rmu_co8330847.1_g000001 Rmu_sc0000031.1_g000021 Rmu_ssc0000175.1_g000027
rosa_roxburghii	Rroxscaffold_6G00398860 Rroxscaffold_7G00160970
rosa_rugosa	Rorug03G0201800 Rorug06G0358100 Rorug06G0358700 Rorug06G0358900
rosa_samantha	Rh3AG250500 Rh3BG286900 Rh3BG287000 Rh6AG468600 Rh6AG468800 Rh6BG431100 Rh6BG432000 Rh6BG479100 Rh6BG479400 Rh6CG484800
rosa_wichuraiana	Rw3G022660 Rw6G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	142, 332
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	6 cut(s)	216, 228, 260, 609, 639, 1148
AclWI	GGATC	3 cut(s)	243, 451, 527
AcsI	RAATTY	3 cut(s)	620, 960, 991
AcuI	CTGAAG	2 cut(s)	552, 903
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	3 cut(s)	772, 797, 876
AfiI	CCNNNNNNNGG	3 cut(s)	44, 142, 332
AgsI	TTSAA	8 cut(s)	433, 514, 604, 857, 991, 1024, 1071, 1078
Alw21I	GWGCWC	3 cut(s)	135, 294, 983
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	3 cut(s)	243, 451, 527
AlwNI	CAGNNNCTG	2 cut(s)	142, 1217
Ama87I	CYCGRG	2 cut(s)	101, 658
AoxI	GGCC	2 cut(s)	205, 1090
ApeKI	GCWGC	6 cut(s)	155, 572, 647, 731, 812, 1193
ApoI	RAATTY	3 cut(s)	620, 960, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AspS9I	GGNCC	1 cut(s)	1090
AsuC2I	CCSGG	5 cut(s)	102, 103, 233, 659, 660
AsuHPI	GGTGA	3 cut(s)	161, 205, 347
AsuII	TTCGAA	1 cut(s)	958
AvaI	CYCGRG	2 cut(s)	101, 658
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	3 cut(s)	135, 294, 983
BbvI	GCAGC	6 cut(s)	142, 584, 634, 743, 824, 1205
BccI	CCATC	6 cut(s)	36, 68, 140, 374, 629, 633
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	5 cut(s)	102, 103, 233, 659, 660
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	2 cut(s)	122, 195
BisI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	8 cut(s)	157, 262, 574, 649, 733, 814, 1150, 1195
Bme1390I	CCNGG	5 cut(s)	102, 103, 233, 659, 660
BmeT110I	CYCGRG	2 cut(s)	101, 658
BmgT120I	GGNCC	1 cut(s)	1090
BmiI	GGNNCC	1 cut(s)	752
BmrFI	CCNGG	5 cut(s)	102, 103, 233, 659, 660
BmsI	GCATC	4 cut(s)	567, 790, 831, 1223
BpmI	CTGGAG	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	958
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	5 cut(s)	102, 103, 233, 659, 660
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	4 cut(s)	100, 101, 231, 658
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 142, 332
Bse1I	ACTGG	2 cut(s)	205, 778
BseDI	CCNNGG	4 cut(s)	100, 101, 231, 658
BseGI	GGATG	3 cut(s)	28, 151, 973
BseLI	CCNNNNNNNGG	3 cut(s)	44, 142, 332
BseMII	CTCAG	3 cut(s)	79, 127, 1150
BseNI	ACTGG	2 cut(s)	205, 778
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	6 cut(s)	142, 584, 634, 743, 824, 1205
BseYI	CCCAGC	1 cut(s)	1210
BshFI	GGCC	2 cut(s)	207, 1092
BsiHKAI	GWGCWC	3 cut(s)	135, 294, 983
BsiHKCI	CYCGRG	2 cut(s)	101, 658
BsiSI	CCGG	5 cut(s)	102, 233, 536, 659, 722
BslFI	GGGAC	3 cut(s)	118, 205, 234
BslI	CCNNNNNNNGG	3 cut(s)	44, 142, 332
BsmAI	GTCTC	1 cut(s)	418
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	3 cut(s)	118, 205, 234
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	207, 1092
BsoBI	CYCGRG	2 cut(s)	101, 658
Bsp119I	TTCGAA	1 cut(s)	958
Bsp1286I	GDGCHC	3 cut(s)	135, 294, 983
Bsp143I	GATC	5 cut(s)	235, 456, 532, 736, 1187
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	6 cut(s)	216, 228, 260, 609, 639, 1148
BspANI	GGCC	2 cut(s)	207, 1092
BspCNI	CTCAG	3 cut(s)	78, 126, 1149
BspLI	GGNNCC	1 cut(s)	752
BspPI	GGATC	3 cut(s)	243, 451, 527
BspT104I	TTCGAA	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	205, 778
BssECI	CCNNGG	4 cut(s)	100, 101, 231, 658
BssMI	GATC	5 cut(s)	235, 456, 532, 736, 1187
BssNAI	GTATAC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	364
Bst4CI	ACNGT	4 cut(s)	61, 248, 330, 1053
Bst6I	CTCTTC	1 cut(s)	1122
BstACI	GRCGYC	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	958
BstC8I	GCNNGC	2 cut(s)	846, 1222
BstDEI	CTNAG	5 cut(s)	65, 113, 343, 816, 1136
BstF5I	GGATG	3 cut(s)	28, 151, 973
BstKTI	GATC	5 cut(s)	238, 459, 535, 739, 1190
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	5 cut(s)	235, 456, 532, 736, 1187
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 164, 204, 809, 1202, 1211
BstSCI	CCNGG	5 cut(s)	100, 101, 231, 657, 658
BstV1I	GCAGC	6 cut(s)	142, 584, 634, 743, 824, 1205
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BstZ17I	GTATAC	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	207, 1092
BtsCI	GGATG	3 cut(s)	28, 151, 973
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	6 cut(s)	57, 198, 292, 326, 879, 1049
Cac8I	GCNNGC	2 cut(s)	846, 1222
CaiI	CAGNNNCTG	2 cut(s)	142, 1217
Cfr13I	GGNCC	1 cut(s)	1090
Cfr9I	CCCGGG	2 cut(s)	101, 658
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	771, 796, 875
CviAII	CATG	5 cut(s)	44, 220, 834, 898, 1097
CviQI	GTAC	3 cut(s)	771, 796, 875
DdeI	CTNAG	5 cut(s)	65, 113, 343, 816, 1136
DpnI	GATC	5 cut(s)	237, 458, 534, 738, 1189
DpnII	GATC	5 cut(s)	235, 456, 532, 736, 1187
Eam1104I	CTCTTC	1 cut(s)	1122
EarI	CTCTTC	1 cut(s)	1122
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	552, 903
Eco88I	CYCGRG	2 cut(s)	101, 658
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	3 cut(s)	620, 960, 991
EcoT22I	ATGCAT	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	5 cut(s)	47, 223, 837, 901, 1100
FaqI	GGGAC	3 cut(s)	118, 205, 234
FatI	CATG	5 cut(s)	43, 219, 833, 897, 1096
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
FokI	GGATG	3 cut(s)	15, 158, 980
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
FspBI	CTAG	2 cut(s)	122, 195
GluI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
GsaI	CCCAGC	1 cut(s)	1214
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	207, 1092
HapII	CCGG	5 cut(s)	102, 233, 536, 659, 722
HgaI	GACGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	47, 223, 837, 901, 1100
HindIII	AAGCTT	1 cut(s)	1065
HinfI	GANTC	3 cut(s)	84, 106, 125
HpaII	CCGG	5 cut(s)	102, 233, 536, 659, 722
HphI	GGTGA	3 cut(s)	161, 205, 347
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	6 cut(s)	130, 550, 563, 943, 1139, 1187
Hpy188III	TCNNGA	3 cut(s)	136, 697, 965
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	4 cut(s)	694, 965, 1134, 1165
HpyCH4III	ACNGT	4 cut(s)	61, 248, 330, 1053
HpyCH4IV	ACGT	2 cut(s)	1111, 1177
HpyCH4V	TGCA	6 cut(s)	17, 158, 353, 558, 844, 1181
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 164, 204, 809, 1202, 1211
HpyF3I	CTNAG	5 cut(s)	65, 113, 343, 816, 1136
HpySE526I	ACGT	2 cut(s)	1111, 1177
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	5 cut(s)	47, 223, 837, 901, 1100
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	235, 456, 532, 736, 1187
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	6 cut(s)	142, 584, 634, 743, 824, 1205
LweI	GCATC	4 cut(s)	567, 790, 831, 1223
MaeI	CTAG	2 cut(s)	122, 195
MaeII	ACGT	2 cut(s)	1111, 1177
MaeIII	GTNAC	4 cut(s)	211, 335, 682, 893
MalI	GATC	5 cut(s)	237, 458, 534, 738, 1189
MboI	GATC	5 cut(s)	235, 456, 532, 736, 1187
MboII	GAAGA	4 cut(s)	487, 578, 1139, 1180
MfeI	CAATTG	1 cut(s)	974
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	3 cut(s)	135, 294, 983
MluCI	AATT	6 cut(s)	413, 527, 620, 960, 974, 991
MlyI	GAGTC	2 cut(s)	100, 134
MmeI	TCCRAC	1 cut(s)	508
Mph1103I	ATGCAT	1 cut(s)	560
MseI	TTAA	1 cut(s)	1055
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	734, 1224
MspI	CCGG	5 cut(s)	102, 233, 536, 659, 722
MspR9I	CCNGG	5 cut(s)	102, 103, 233, 659, 660
MunI	CAATTG	1 cut(s)	974
Mva1269I	GAATGC	1 cut(s)	17
MwoI	GCNNNNNNNGC	6 cut(s)	139, 164, 204, 809, 1202, 1211
NciI	CCSGG	5 cut(s)	102, 103, 233, 659, 660
NdeII	GATC	5 cut(s)	235, 456, 532, 736, 1187
NlaIII	CATG	5 cut(s)	47, 223, 837, 901, 1100
NlaIV	GGNNCC	1 cut(s)	752
NmuCI	GTSAC	4 cut(s)	211, 335, 682, 893
NsiI	ATGCAT	1 cut(s)	560
NspV	TTCGAA	1 cut(s)	958
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	84
PflMI	CCANNNNNTGG	2 cut(s)	142, 332
PkrI	GCNGC	8 cut(s)	157, 262, 574, 649, 733, 814, 1150, 1195
PleI	GAGTC	2 cut(s)	100, 133
PpsI	GAGTC	2 cut(s)	100, 133
Psp124BI	GAGCTC	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	1210
PspN4I	GGNNCC	1 cut(s)	752
PspPI	GGNCC	1 cut(s)	1090
PsrI	GAACNNNNNNTAC	2 cut(s)	1137, 1169
PstNI	CAGNNNCTG	2 cut(s)	142, 1217
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	2 cut(s)	734, 1224
RsaI	GTAC	3 cut(s)	772, 797, 876
RsaNI	GTAC	3 cut(s)	771, 796, 875
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	1055
SatI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
Sau3AI	GATC	5 cut(s)	235, 456, 532, 736, 1187
Sau96I	GGNCC	1 cut(s)	1090
SchI	GAGTC	2 cut(s)	100, 134
ScrFI	CCNGG	5 cut(s)	102, 103, 233, 659, 660
SduI	GDGCHC	3 cut(s)	135, 294, 983
SfaNI	GCATC	4 cut(s)	567, 790, 831, 1223
SfuI	TTCGAA	1 cut(s)	958
SmaI	CCCGGG	2 cut(s)	103, 660
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	6 cut(s)	413, 527, 620, 960, 974, 991
SsiI	CCGC	6 cut(s)	216, 228, 260, 609, 639, 1148
SspI	AATATT	2 cut(s)	306, 322
SspMI	CTAG	2 cut(s)	122, 195
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	5 cut(s)	100, 101, 231, 657, 658
TaaI	ACNGT	4 cut(s)	61, 248, 330, 1053
TaiI	ACGT	2 cut(s)	1114, 1180
TaqI	TCGA	3 cut(s)	177, 276, 958
TasI	AATT	6 cut(s)	413, 527, 620, 960, 974, 991
TatI	WGTACW	1 cut(s)	874
TauI	GCSGC	2 cut(s)	263, 1151
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	1055
Tru9I	TTAA	1 cut(s)	1055
TscAI	CASTG	6 cut(s)	64, 205, 299, 333, 886, 1056
TseFI	GTSAC	4 cut(s)	211, 335, 682, 893
TseI	GCWGC	6 cut(s)	155, 572, 647, 731, 812, 1193
Tsp45I	GTSAC	4 cut(s)	211, 335, 682, 893
TspDTI	ATGAA	3 cut(s)	768, 1122, 1140
TspMI	CCCGGG	2 cut(s)	101, 658
TspRI	CASTG	6 cut(s)	64, 205, 299, 333, 886, 1056
Van91I	CCANNNNNTGG	2 cut(s)	142, 332
XapI	RAATTY	3 cut(s)	620, 960, 991
XcmI	CCANNNNNNNNNTGG	2 cut(s)	143, 632
XmaI	CCCGGG	2 cut(s)	101, 658
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	122, 195
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.