Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003463

Physical Location & Seq

Genomic Coordinates Reverse (-)

27913175 .. 27916549

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCAAAGGGTATACGCACCAAAATATGATGGCAAGTATTTACACAAGCTTATCAAGGAAAAATTAGGAGACAGACGATTGAACCAGACATTCACCAATGTTGTGATCCCAACTTTTGATATAAGTTGCCTCCAACCAGCTATCTTCTCCACCTACGAGGGTTTGACTGCTATAACCCAAGTGACAAAAGAAATCAAGAAGGGAAATTCTGACTTCTCTCCGGTTGAGGCAGCTGATCAGGGTAATAGGTTCCTCCTCATATCTTTGGGTACTGGTTCATCAGCAAAATCCAAGTACGATGCCAGAGTAGCAGCTAAATGGGGTATTATGGCATGGTTGATGCAAGCCAACTTTCAATGTCCATTGTTGGATGTACTCACTGAAGCAAGTAGTGACATGGTAGATTGCCACCTTTCTACCCTTTTCCAAGCTCTTTGGTCTGACGATAACTACCTTCGAATTCAGGATGACCAATTGAGCACCGACTTGAATTCCATGGATAATGCTACGCCCGAAAACTTGAAAAAACTTGTAAAAGTGGGAGAGGCACTGTTAAAGAAACAAGCTTCAAAGTTGAATATAGCTACCGGCCTCCATGAGCCTGATGAACGTCATATTACTAATGAAGAGGCTCTCAGAAGGGTAGCGGCGGTTCTCTCCAAAGAGAAGAAGGAACGTGCAATCAAATCAGCAGCACCACAAGCAAACCCAGCATCTGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

241

Amino Acids

26.75

Weight (kDa)

8.32

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34810 FvH4_4g24290
malus_domestica	MD08G1100500.v1.1 MD08G1104500.v1.1 MD15G1085400.v1.1
prunus_persica	Prupe.1G439500_v2.0.a1 Prupe.1G439500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482861 RchiOBHm_Chr6g0307251 RchiOBHm_Chr6g0307311 RchiOBHm_Chr6g0307331 RchiOBHm_Chr6g0307501 RchiOBHm_Chr6g0307671
rosa_laevigata	RLG00000010710 RLG00000010723
rosa_multiflora	Rmu_co8330847.1_g000001 Rmu_sc0000031.1_g000021 Rmu_ssc0000175.1_g000027
rosa_roxburghii	Rroxscaffold_6G00398860 Rroxscaffold_7G00160970
rosa_rugosa	Rorug03G0201800 Rorug06G0358100 Rorug06G0358700 Rorug06G0358900
rosa_samantha	Rh3AG250500 Rh3BG286900 Rh3BG287000 Rh6AG468600 Rh6AG468800 Rh6BG431100 Rh6BG432000 Rh6BG479100 Rh6BG479400 Rh6CG484800
rosa_wichuraiana	Rw3G022660 Rw6G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	2 cut(s)	647, 650
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	205, 459, 490
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	3 cut(s)	271, 296, 375
AgsI	TTSAA	6 cut(s)	82, 356, 490, 523, 570, 577
AluBI	AGCT	8 cut(s)	49, 140, 233, 314, 431, 566, 584, 723
AluI	AGCT	8 cut(s)	49, 140, 233, 314, 431, 566, 584, 723
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	3 cut(s)	230, 311, 692
ApoI	RAATTY	3 cut(s)	205, 459, 490
AsuHPI	GGTGA	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	242, 323, 704
BccI	CCATC	1 cut(s)	23
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	63
BisI	GCNGC	4 cut(s)	231, 312, 648, 693
BlsI	GCNGC	4 cut(s)	232, 313, 649, 694
BmiI	GGNNCC	1 cut(s)	251
BmsI	GCATC	3 cut(s)	289, 330, 722
Bpu14I	TTCGAA	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	220
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	2 cut(s)	376, 472
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	242, 323, 704
BseYI	CCCAGC	1 cut(s)	709
BshFI	GGCC	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	221, 588
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	591
Bsp119I	TTCGAA	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	2 cut(s)	105, 235
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	2 cut(s)	647, 650
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	1 cut(s)	648
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	105, 235
BssNAI	GTATAC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	495
Bst1107I	GTATAC	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	621
BstBI	TTCGAA	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	345, 721
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	376, 472
BstKTI	GATC	2 cut(s)	108, 238
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	105, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 701, 710
BstV1I	GCAGC	3 cut(s)	242, 323, 704
BstZ17I	GTATAC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	591
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	376, 472
BtsIMutI	CAGTG	2 cut(s)	378, 548
Cac8I	GCNNGC	2 cut(s)	345, 721
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr10I	RCCGGY	1 cut(s)	587
Csp6I	GTAC	3 cut(s)	270, 295, 374
CviAII	CATG	4 cut(s)	333, 397, 496, 596
CviQI	GTAC	3 cut(s)	270, 295, 374
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	2 cut(s)	107, 237
DpnII	GATC	2 cut(s)	105, 235
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	402
EcoRI	GAATTC	2 cut(s)	459, 490
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	4 cut(s)	336, 400, 499, 599
FatI	CATG	4 cut(s)	332, 396, 495, 595
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	231, 312, 648, 693
FokI	GGATG	2 cut(s)	383, 479
Fsp4HI	GCNGC	4 cut(s)	231, 312, 648, 693
GluI	GCNGC	4 cut(s)	231, 312, 648, 693
GsaI	CCCAGC	1 cut(s)	713
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	2 cut(s)	221, 588
Hin1II	CATG	4 cut(s)	336, 400, 499, 599
HindIII	AAGCTT	2 cut(s)	47, 564
HpaII	CCGG	2 cut(s)	221, 588
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	211, 442, 638
Hpy188III	TCNNGA	2 cut(s)	196, 464
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	4 cut(s)	193, 464, 633, 664
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	2 cut(s)	610, 676
HpyCH4V	TGCA	3 cut(s)	4, 343, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 701, 710
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	2 cut(s)	610, 676
Hsp92II	CATG	4 cut(s)	336, 400, 499, 599
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	105, 235
LpnPI	CCDG	9 cut(s)	98, 150, 224, 234, 258, 316, 449, 601, 615
Lsp1109I	GCAGC	3 cut(s)	242, 323, 704
LweI	GCATC	3 cut(s)	289, 330, 722
MaeII	ACGT	2 cut(s)	610, 676
MaeIII	GTNAC	2 cut(s)	181, 392
MalI	GATC	2 cut(s)	107, 237
MboI	GATC	2 cut(s)	105, 235
MboII	GAAGA	3 cut(s)	136, 638, 679
MfeI	CAATTG	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	5 cut(s)	62, 205, 459, 473, 490
MmeI	TCCRAC	2 cut(s)	157, 348
MnlI	CCTC	8 cut(s)	140, 151, 220, 263, 266, 538, 602, 622
MseI	TTAA	1 cut(s)	554
MspA1I	CMGCKG	2 cut(s)	233, 723
MspI	CCGG	2 cut(s)	221, 588
MunI	CAATTG	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	308, 701, 710
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	2 cut(s)	105, 235
NlaIII	CATG	4 cut(s)	336, 400, 499, 599
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	2 cut(s)	181, 392
NspV	TTCGAA	1 cut(s)	457
PkrI	GCNGC	4 cut(s)	232, 313, 649, 694
PspFI	CCCAGC	1 cut(s)	709
PspN4I	GGNNCC	1 cut(s)	251
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PstNI	CAGNNNCTG	1 cut(s)	716
PvuII	CAGCTG	2 cut(s)	233, 723
RsaI	GTAC	3 cut(s)	271, 296, 375
RsaNI	GTAC	3 cut(s)	270, 295, 374
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	4 cut(s)	231, 312, 648, 693
Sau3AI	GATC	2 cut(s)	105, 235
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	3 cut(s)	289, 330, 722
SfuI	TTCGAA	1 cut(s)	457
Sse9I	AATT	5 cut(s)	62, 205, 459, 473, 490
SsiI	CCGC	2 cut(s)	647, 650
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	2 cut(s)	613, 679
TaqI	TCGA	1 cut(s)	457
TasI	AATT	5 cut(s)	62, 205, 459, 473, 490
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	650
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TscAI	CASTG	2 cut(s)	385, 555
TseFI	GTSAC	2 cut(s)	181, 392
TseI	GCWGC	3 cut(s)	230, 311, 692
Tsp45I	GTSAC	2 cut(s)	181, 392
TspDTI	ATGAA	3 cut(s)	267, 621, 639
TspRI	CASTG	2 cut(s)	385, 555
XapI	RAATTY	3 cut(s)	205, 459, 490
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.