Rh3BG287000

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003463
Physical Location & Seq
Forward (+)
28643799 .. 28644512
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG287000.1

Sequence Viewer

Length: 399 bp
ATGGCATGGTTGATGCAAGCCAACTTTCAATGTCCATTGTTAGATGTACTCACTGAAGCAAGTAGTGACATGGTAGATTGCCACCTTTCTACCCTTTTCCAAGCTCTTTGGTCTGACGATAACTACCTTCGAATTCAGGATGACCAATTGAGCACCGACTTGAATTCTATGGATAATGCTACGCCCGAAAACTTGAAAAAACTTGTAAAAGTGGGAGAGGTACTATTAAAGAAACAAGCTTCAAAGTTGAATATAGCTACCGGCCTCCATGAGCCTGATGAATGTCATATTACTAATGAAGAGGCTCTCAGAAGGGTAGCGGCGGTTCTCTCCAAAGAGAAGAAGGAACGTGCAATCAGATCAGCAGCACCACAAGCAAACCCAGCATCTGCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

132

Amino Acids

14.64

Weight (kDa)

5.12

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 320, 323
AcsI RAATTY 2 cut(s) 132, 163
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 48, 222
AgsI TTSAA 5 cut(s) 29, 163, 196, 243, 250
AluBI AGCT 4 cut(s) 104, 239, 257, 396
AluI AGCT 4 cut(s) 104, 239, 257, 396
Alw21I GWGCWC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 132, 163
AsuII TTCGAA 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 377
BisI GCNGC 2 cut(s) 321, 366
BlsI GCNGC 2 cut(s) 322, 367
BmsI GCATC 2 cut(s) 3, 395
Bpu14I TTCGAA 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 260
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 322
BseXI GCAGC 1 cut(s) 377
BseYI CCCAGC 1 cut(s) 382
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 261
BsnI GGCC 1 cut(s) 264
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 359
BspACI CCGC 2 cut(s) 320, 323
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 321
BspT104I TTCGAA 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssMI GATC 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 18, 394
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 1 cut(s) 362
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 2 cut(s) 374, 383
BstV1I GCAGC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 18, 394
CaiI CAGNNNCTG 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 260
Csp6I GTAC 2 cut(s) 47, 221
CviAII CATG 3 cut(s) 6, 70, 269
CviJI RGCY 8 cut(s) 20, 104, 239, 257, 264, 274, 305, 396
CviKI_1 RGCY 8 cut(s) 20, 104, 239, 257, 264, 274, 305, 396
CviQI GTAC 2 cut(s) 47, 221
DdeI CTNAG 1 cut(s) 308
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 75
EcoRI GAATTC 2 cut(s) 132, 163
FaeI CATG 3 cut(s) 9, 73, 272
FaiI YATR 6 cut(s) 7, 71, 170, 254, 270, 288
FatI CATG 3 cut(s) 5, 69, 268
Fnu4HI GCNGC 2 cut(s) 321, 366
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 321, 366
GluI GCNGC 2 cut(s) 321, 366
GsaI CCCAGC 1 cut(s) 386
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 261
Hin1II CATG 3 cut(s) 9, 73, 272
HindIII AAGCTT 1 cut(s) 237
HpaII CCGG 1 cut(s) 261
Hpy188I TCNGA 3 cut(s) 115, 311, 359
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 137, 306, 337
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 16, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 383
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 3 cut(s) 9, 73, 272
Kzo9I GATC 1 cut(s) 359
LpnPI CCDG 3 cut(s) 122, 274, 288
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 3, 395
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 65
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MboII GAAGA 2 cut(s) 311, 352
MfeI CAATTG 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 132, 146, 163
MnlI CCTC 3 cut(s) 211, 275, 295
MseI TTAA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 1 cut(s) 261
MunI CAATTG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 374, 383
NdeII GATC 1 cut(s) 359
NlaIII CATG 3 cut(s) 9, 73, 272
NmuCI GTSAC 1 cut(s) 65
NspV TTCGAA 1 cut(s) 130
PkrI GCNGC 2 cut(s) 322, 367
PspFI CCCAGC 1 cut(s) 382
PsrI GAACNNNNNNTAC 2 cut(s) 309, 341
PstNI CAGNNNCTG 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 396
RsaI GTAC 2 cut(s) 48, 222
RsaNI GTAC 2 cut(s) 47, 221
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 2 cut(s) 321, 366
Sau3AI GATC 1 cut(s) 359
SduI GDGCHC 1 cut(s) 155
SetI ASST 8 cut(s) 87, 106, 129, 222, 241, 259, 352, 398
SfaNI GCATC 2 cut(s) 3, 395
SfuI TTCGAA 1 cut(s) 130
Sse9I AATT 3 cut(s) 132, 146, 163
SsiI CCGC 2 cut(s) 320, 323
TaiI ACGT 1 cut(s) 352
TaqI TCGA 1 cut(s) 130
TasI AATT 3 cut(s) 132, 146, 163
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 294, 312
TspRI CASTG 1 cut(s) 58
XapI RAATTY 2 cut(s) 132, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.