RLG00000010723

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003463
Physical Location & Seq
Forward (+)
3863125 .. 3866130
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010723

Sequence Viewer

Length: 1392 bp
ATGGAGAAAGCAAGTGCATTCCTTTGCCATCCCCCTCCCTCACATGGAAAGCTCATCACTGTTCTCAGCATTGATGGAGGTGGAATCAAAGGGATTATCCCCGGAACCCTGCTCAGCTTCCTAGAGTCCGAGCTCCAGAAGCTGGATGGTGAAGCTGCAAGGTTGGCAGATTATTTCGATGTTATTGCAGGGACTAGCACAGGTGGCCTTGTCACTGCCATGCTTACCGCCCCGGATCAAAAAAACCGTCCCTTGTTTGCAGCTAACCAGATTGTTGATTTTTACCTTGAGCACTGCCCTAAAATATTCCCTCAAATCAATATTCCACTGTTTGGTGACGCCTTAGAAAATGCAAAGGGTGTATACGCACCAAAATATGATGGCAAGTATTTACACAAGCTTATCAAGGAAAAATTAGGAGACAGACGATTGAACCAGACATTGACCAATGTTGTGATCCCAACTTTTGATATAAGTTGCCTCCAACCGGCTATCTTCTCCACCTACGAGTTGAAAAGGAACAAGAAATTAGATCCGGCTCTACTGTCGGATATATGCATCGGAACTTCAGCAGCACCAACTTATCTTCCCTCGCATTATTTCAAAACCGCAACAAGAGAATTCCATCTTGTTGATGGCGGTGTGGCTGCTAATAACCCGGGTTTGACTGCTATAACCGAAGTGACAAAAGAAATCAAGAAGGGAAATTCTGACTTCTCTCCGGTTGAGGCAGCTGATCAGGGTAATAGGTTCCTCCTCATATCTTTGGGTACTGGTTCATCAGCAAAATCCAAGTACGATGCCAAAGTAGCAGCTAAGTGGGGTATTATGGCATGGTTGATGCAAGCCAACTTTCAATGTCCATTGTTAGATGTACTCACTGAAGCAAGTAGTGACATGGTAGATTGCCACCTTTCTACCCTTTTCCAAGCTCTTTGGTCTGACGATAACTACCTTCGAATTCAGGATGACCAATTGAGTACCGACTTGAATTCTATGGATAATGCTACGCCCGAAAACTTGAAAAAACTTGTAAAAGTGGGAGAGGCACTGTTAAAGAAACAAGCTTCAAAGTTGAATATAGCTACCGGCCTCCATGAGCCTGATGAACGTCATATTACTAATGAAGAGGCTCTCAGAAGGGTAGCGGCAGTTCTCTCCAAAGAGAAAAAGGAACGCTTATCACATTTCTTGGCCGGCGGTGTCCCAAATCTGGGCCTTGATGATCTAACCATCAATGTGGATGCTCCGGGTGGCGAACTCAACGCCAATGGTGGACTTAGACTCGAGGTTGAACTTGTTGCGCATGAACCTGGACAACAATTCGGATTTGCCGATGCCGGAATCCCCGATCAAGACGACCTTGAAGTGGTAGTAGTCGCCGACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

464

Amino Acids

50.25

Weight (kDa)

5.24

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 22 - 220 5.7e-21 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1305
AccB7I CCANNNNNTGG 2 cut(s) 142, 332
AccI GTMKAC 1 cut(s) 363
AciI CCGC 5 cut(s) 228, 609, 639, 1148, 1200
AclWI GGATC 3 cut(s) 243, 451, 527
AcoI YGGCCR 1 cut(s) 1194
AcsI RAATTY 4 cut(s) 620, 706, 960, 991
AcuI CTGAAG 2 cut(s) 552, 903
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 4 cut(s) 772, 797, 876, 982
AfiI CCNNNNNNNGG 7 cut(s) 44, 142, 332, 487, 1213, 1214, 1369
AjnI CCWGG 1 cut(s) 1312
Alw21I GWGCWC 2 cut(s) 135, 294
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 3 cut(s) 243, 451, 527
AlwNI CAGNNNCTG 1 cut(s) 142
Ama87I CYCGRG 2 cut(s) 658, 1286
AoxI GGCC 4 cut(s) 205, 1090, 1194, 1216
ApeKI GCWGC 6 cut(s) 155, 260, 572, 647, 731, 812
ApoI RAATTY 4 cut(s) 620, 706, 960, 991
ArsI GACNNNNNNTTYG 2 cut(s) 232, 264
AspLEI GCGC 1 cut(s) 1306
AspS9I GGNCC 1 cut(s) 1216
AsuC2I CCSGG 5 cut(s) 102, 233, 659, 660, 1251
AsuHPI GGTGA 2 cut(s) 161, 347
AsuII TTCGAA 1 cut(s) 958
AvaI CYCGRG 2 cut(s) 658, 1286
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 135, 294
BbvI GCAGC 6 cut(s) 142, 272, 584, 634, 743, 824
BccI CCATC 7 cut(s) 36, 68, 140, 374, 629, 633, 1241
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 1314
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 5 cut(s) 102, 233, 659, 660, 1251
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 2 cut(s) 122, 195
BfmI CTRYAG 1 cut(s) 1388
BisI GCNGC 7 cut(s) 156, 261, 573, 648, 732, 813, 1149
BlpI GCTNAGC 1 cut(s) 113
BlsI GCNGC 7 cut(s) 157, 262, 574, 649, 733, 814, 1150
Bme1390I CCNGG 6 cut(s) 102, 233, 659, 660, 1251, 1314
BmeT110I CYCGRG 2 cut(s) 658, 1286
BmgT120I GGNCC 1 cut(s) 1216
BmiI GGNNCC 2 cut(s) 106, 752
BmrFI CCNGG 6 cut(s) 102, 233, 659, 660, 1251, 1314
BmsI GCATC 5 cut(s) 567, 790, 831, 1234, 1327
BpmI CTGGAG 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 958
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 5 cut(s) 102, 233, 659, 660, 1251
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 100, 231, 658
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 142, 332, 487, 1213, 1214, 1369
Bse118I RCCGGY 3 cut(s) 487, 1088, 1196
Bse1I ACTGG 1 cut(s) 778
BseBI CCWGG 1 cut(s) 1314
BseDI CCNNGG 3 cut(s) 100, 231, 658
BseGI GGATG 4 cut(s) 28, 151, 973, 1249
BseLI CCNNNNNNNGG 7 cut(s) 44, 142, 332, 487, 1213, 1214, 1369
BseMII CTCAG 3 cut(s) 79, 127, 1150
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 1 cut(s) 746
BseXI GCAGC 6 cut(s) 142, 272, 584, 634, 743, 824
BshFI GGCC 4 cut(s) 207, 1092, 1196, 1218
BsiHKAI GWGCWC 2 cut(s) 135, 294
BsiHKCI CYCGRG 2 cut(s) 658, 1286
BslFI GGGAC 3 cut(s) 205, 234, 1190
BslI CCNNNNNNNGG 7 cut(s) 44, 142, 332, 487, 1213, 1214, 1369
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 3 cut(s) 205, 234, 1190
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 4 cut(s) 207, 1092, 1196, 1218
BsoBI CYCGRG 2 cut(s) 658, 1286
Bsp119I TTCGAA 1 cut(s) 958
Bsp1286I GDGCHC 2 cut(s) 135, 294
Bsp143I GATC 6 cut(s) 235, 456, 532, 736, 1225, 1351
Bsp1720I GCTNAGC 1 cut(s) 113
BspACI CCGC 5 cut(s) 228, 609, 639, 1148, 1200
BspANI GGCC 4 cut(s) 207, 1092, 1196, 1218
BspCNI CTCAG 3 cut(s) 78, 126, 1149
BspLI GGNNCC 2 cut(s) 106, 752
BspPI GGATC 3 cut(s) 243, 451, 527
BspT104I TTCGAA 1 cut(s) 958
BsrFI RCCGGY 3 cut(s) 487, 1088, 1196
BsrI ACTGG 1 cut(s) 778
BssAI RCCGGY 3 cut(s) 487, 1088, 1196
BssECI CCNNGG 3 cut(s) 100, 231, 658
BssMI GATC 6 cut(s) 235, 456, 532, 736, 1225, 1351
BssNAI GTATAC 1 cut(s) 364
BssNI GRCGYC 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 1314
Bst4CI ACNGT 5 cut(s) 61, 248, 330, 546, 1053
Bst6I CTCTTC 1 cut(s) 1122
BstACI GRCGYC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 958
BstC8I GCNNGC 2 cut(s) 846, 1198
BstDEI CTNAG 6 cut(s) 65, 113, 343, 816, 1136, 1280
BstF5I GGATG 4 cut(s) 28, 151, 973, 1249
BstHHI GCGC 1 cut(s) 1306
BstKTI GATC 6 cut(s) 238, 459, 535, 739, 1228, 1354
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 6 cut(s) 235, 456, 532, 736, 1225, 1351
BstMWI GCNNNNNNNGC 4 cut(s) 139, 164, 204, 809
BstNI CCWGG 1 cut(s) 1314
BstSCI CCNGG 6 cut(s) 100, 231, 657, 658, 1249, 1312
BstSFI CTRYAG 1 cut(s) 1388
BstV1I GCAGC 6 cut(s) 142, 272, 584, 634, 743, 824
BstX2I RGATCY 1 cut(s) 532
BstXI CCANNNNNNTGG 1 cut(s) 1240
BstYI RGATCY 1 cut(s) 532
BstZ17I GTATAC 1 cut(s) 364
BsuRI GGCC 4 cut(s) 207, 1092, 1196, 1218
BtsCI GGATG 4 cut(s) 28, 151, 973, 1249
BtsI GCAGTG 2 cut(s) 213, 292
BtsIMutI CAGTG 6 cut(s) 57, 213, 292, 326, 879, 1049
Cac8I GCNNGC 2 cut(s) 846, 1198
CaiI CAGNNNCTG 1 cut(s) 142
CfoI GCGC 1 cut(s) 1306
Cfr10I RCCGGY 3 cut(s) 487, 1088, 1196
Cfr13I GGNCC 1 cut(s) 1216
Cfr9I CCCGGG 1 cut(s) 658
CseI GACGC 1 cut(s) 347
Csp6I GTAC 4 cut(s) 771, 796, 875, 981
CviAII CATG 6 cut(s) 44, 220, 834, 898, 1097, 1307
CviQI GTAC 4 cut(s) 771, 796, 875, 981
DdeI CTNAG 6 cut(s) 65, 113, 343, 816, 1136, 1280
DpnI GATC 6 cut(s) 237, 458, 534, 738, 1227, 1353
DpnII GATC 6 cut(s) 235, 456, 532, 736, 1225, 1351
EaeI YGGCCR 1 cut(s) 1194
Eam1104I CTCTTC 1 cut(s) 1122
EarI CTCTTC 1 cut(s) 1122
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 552, 903
Eco88I CYCGRG 2 cut(s) 658, 1286
EcoICRI GAGCTC 1 cut(s) 133
EcoRI GAATTC 3 cut(s) 620, 960, 991
EcoRII CCWGG 1 cut(s) 1312
EcoT22I ATGCAT 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 6 cut(s) 47, 223, 837, 901, 1100, 1310
FalI AAGNNNNNCTT 4 cut(s) 1163, 1195, 1347, 1379
FaqI GGGAC 3 cut(s) 205, 234, 1190
FatI CATG 6 cut(s) 43, 219, 833, 897, 1096, 1306
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 7 cut(s) 156, 261, 573, 648, 732, 813, 1149
FokI GGATG 4 cut(s) 15, 158, 980, 1256
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 7 cut(s) 156, 261, 573, 648, 732, 813, 1149
FspBI CTAG 2 cut(s) 122, 195
FspI TGCGCA 1 cut(s) 1305
GlaI GCGC 1 cut(s) 1305
GluI GCNGC 7 cut(s) 156, 261, 573, 648, 732, 813, 1149
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 4 cut(s) 207, 1092, 1196, 1218
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 1306
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 6 cut(s) 47, 223, 837, 901, 1100, 1310
Hin6I GCGC 1 cut(s) 1304
HinP1I GCGC 1 cut(s) 1304
HindIII AAGCTT 2 cut(s) 398, 1065
HinfI GANTC 4 cut(s) 84, 125, 1284, 1344
HphI GGTGA 2 cut(s) 161, 347
Hpy166II GTNNAC 2 cut(s) 364, 1277
Hpy188I TCNGA 7 cut(s) 130, 550, 563, 712, 943, 1139, 1328
Hpy188III TCNNGA 4 cut(s) 136, 697, 965, 1355
Hpy8I GTNNAC 2 cut(s) 364, 1277
HpyAV CCTTC 3 cut(s) 694, 965, 1134
HpyCH4III ACNGT 5 cut(s) 61, 248, 330, 546, 1053
HpyCH4IV ACGT 1 cut(s) 1111
HpyCH4V TGCA 7 cut(s) 17, 158, 188, 260, 353, 558, 844
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 164, 204, 809
HpyF3I CTNAG 6 cut(s) 65, 113, 343, 816, 1136, 1280
HpySE526I ACGT 1 cut(s) 1111
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 6 cut(s) 47, 223, 837, 901, 1100, 1310
HspAI GCGC 1 cut(s) 1304
KroI GCCGGC 1 cut(s) 1196
KroNI GCCGGC 1 cut(s) 1198
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 6 cut(s) 235, 456, 532, 736, 1225, 1351
LmnI GCTCC 2 cut(s) 138, 1252
Lsp1109I GCAGC 6 cut(s) 142, 272, 584, 634, 743, 824
LweI GCATC 5 cut(s) 567, 790, 831, 1234, 1327
MaeI CTAG 2 cut(s) 122, 195
MaeII ACGT 1 cut(s) 1111
MaeIII GTNAC 4 cut(s) 211, 335, 682, 893
MalI GATC 6 cut(s) 237, 458, 534, 738, 1227, 1353
MboI GATC 6 cut(s) 235, 456, 532, 736, 1225, 1351
MboII GAAGA 3 cut(s) 487, 578, 1139
MfeI CAATTG 1 cut(s) 974
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 2 cut(s) 135, 294
MluCI AATT 8 cut(s) 413, 527, 620, 706, 960, 974, 991, 1322
MlyI GAGTC 2 cut(s) 134, 1278
MmeI TCCRAC 2 cut(s) 508, 528
Mph1103I ATGCAT 1 cut(s) 560
MroNI GCCGGC 1 cut(s) 1196
MseI TTAA 1 cut(s) 1055
MslI CAYNNNNRTG 2 cut(s) 218, 1238
MspA1I CMGCKG 1 cut(s) 734
MspR9I CCNGG 6 cut(s) 102, 233, 659, 660, 1251, 1314
MunI CAATTG 1 cut(s) 974
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 1 cut(s) 1314
MwoI GCNNNNNNNGC 4 cut(s) 139, 164, 204, 809
NaeI GCCGGC 1 cut(s) 1198
NciI CCSGG 5 cut(s) 102, 233, 659, 660, 1251
NdeII GATC 6 cut(s) 235, 456, 532, 736, 1225, 1351
NgoMIV GCCGGC 1 cut(s) 1196
NlaIII CATG 6 cut(s) 47, 223, 837, 901, 1100, 1310
NlaIV GGNNCC 2 cut(s) 106, 752
NmuCI GTSAC 4 cut(s) 211, 335, 682, 893
NsbI TGCGCA 1 cut(s) 1305
NsiI ATGCAT 1 cut(s) 560
NspV TTCGAA 1 cut(s) 958
PaeR7I CTCGAG 1 cut(s) 1286
PcsI WCGNNNNNNNCGW 1 cut(s) 1332
PctI GAATGC 1 cut(s) 17
PdiI GCCGGC 1 cut(s) 1198
PfeI GAWTC 2 cut(s) 84, 1344
PflMI CCANNNNNTGG 2 cut(s) 142, 332
PkrI GCNGC 7 cut(s) 157, 262, 574, 649, 733, 814, 1150
PleI GAGTC 2 cut(s) 133, 1278
PpsI GAGTC 2 cut(s) 133, 1278
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 1312
PspGI CCWGG 1 cut(s) 1312
PspN4I GGNNCC 2 cut(s) 106, 752
PspPI GGNCC 1 cut(s) 1216
PspXI VCTCGAGB 1 cut(s) 1286
PsrI GAACNNNNNNTAC 2 cut(s) 1137, 1169
PstNI CAGNNNCTG 1 cut(s) 142
PsuI RGATCY 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 4 cut(s) 772, 797, 876, 982
RsaNI GTAC 4 cut(s) 771, 796, 875, 981
RseI CAYNNNNRTG 2 cut(s) 218, 1238
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 1055
SatI GCNGC 7 cut(s) 156, 261, 573, 648, 732, 813, 1149
Sau3AI GATC 6 cut(s) 235, 456, 532, 736, 1225, 1351
Sau96I GGNCC 1 cut(s) 1216
SchI GAGTC 2 cut(s) 134, 1278
ScrFI CCNGG 6 cut(s) 102, 233, 659, 660, 1251, 1314
SduI GDGCHC 2 cut(s) 135, 294
SfaNI GCATC 5 cut(s) 567, 790, 831, 1234, 1327
SfcI CTRYAG 1 cut(s) 1388
Sfr274I CTCGAG 1 cut(s) 1286
SfuI TTCGAA 1 cut(s) 958
SlaI CTCGAG 1 cut(s) 1286
SmaI CCCGGG 1 cut(s) 660
SmiMI CAYNNNNRTG 2 cut(s) 218, 1238
SmlI CTYRAG 2 cut(s) 287, 1286
SmoI CTYRAG 2 cut(s) 287, 1286
Sse9I AATT 8 cut(s) 413, 527, 620, 706, 960, 974, 991, 1322
SsiI CCGC 5 cut(s) 228, 609, 639, 1148, 1200
SspI AATATT 2 cut(s) 306, 322
SspMI CTAG 2 cut(s) 122, 195
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 6 cut(s) 100, 231, 657, 658, 1249, 1312
TaaI ACNGT 5 cut(s) 61, 248, 330, 546, 1053
TaiI ACGT 1 cut(s) 1114
TaqI TCGA 3 cut(s) 177, 958, 1287
TasI AATT 8 cut(s) 413, 527, 620, 706, 960, 974, 991, 1322
TatI WGTACW 1 cut(s) 874
TauI GCSGC 1 cut(s) 1151
TfiI GAWTC 2 cut(s) 84, 1344
Tru1I TTAA 1 cut(s) 1055
Tru9I TTAA 1 cut(s) 1055
TscAI CASTG 6 cut(s) 64, 220, 299, 333, 886, 1056
TseFI GTSAC 4 cut(s) 211, 335, 682, 893
TseI GCWGC 6 cut(s) 155, 260, 572, 647, 731, 812
Tsp45I GTSAC 4 cut(s) 211, 335, 682, 893
TspDTI ATGAA 4 cut(s) 768, 1122, 1140, 1323
TspMI CCCGGG 1 cut(s) 658
TspRI CASTG 6 cut(s) 64, 220, 299, 333, 886, 1056
Van91I CCANNNNNTGG 2 cut(s) 142, 332
XapI RAATTY 4 cut(s) 620, 706, 960, 991
XcmI CCANNNNNNNNNTGG 2 cut(s) 143, 632
XhoI CTCGAG 1 cut(s) 1286
XmaI CCCGGG 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 2 cut(s) 122, 195
Zsp2I ATGCAT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.