Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003463

Physical Location & Seq

Genomic Coordinates Forward (+)

37372057 .. 37374459

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G439500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAGAAAACAAGATCATCCCTTCACTCTCCCACAAATGGAAGTCTCATTACTGTTCTTAGTATTGATGGAGGTGGAATAAGAGGGATTATCCCAGGAACCATCCTCAACTTCTTAGAGTCTGAGCTTCAGAAACTGGATGGTCAGGATGCAAGGCTGGCAGATTATTTTGATGTGATTACAGGGACTAGTACAGGTGGCCTTGTGACAGCCATGCTTACTACCCCAAATGAAAATAACCGTCCCTTGTATGCTGCTAAAGATATCAACCCTTTTTATCTCGAAAACTGCCCTAAAATCTTCCCCCAATCCAGTTCTCCACTCGCCGATGTCGCAGAGAATTTGGAAAGTTTAAGGAGACCAAAATATGATGGAAAGTATTTACATAAAATGTTGAAGGAAAAATTAGGAGACAAACATTTGCGCGACACATTAACTAATGTTGTAATCCCAACTTTTGATATAAAGCGACTGCAACCAGTTATCTTCTCCAGCTATCAGTTGAAAAAGAAACCCAGCTTAGATGCTTTGCTTTCGGATATATGTATTGGAACTTCAGCAGCCCCATACTATCTTCCAACCTATCAATTTAAATCCACAAATTCAAATGGTGAATCAAGAGAATTCAATCTCACCGACGGTGGAGTTGCTGCCAATAACCCGGCCTTGGTTGCTATGAGCGAAGTGACAAAACAAATCCACAAGGGCAACCCTGACTTCCTGCCTATGGGTGAAAATGAACAGTTGTATGGGCGGTTCCTAGTCATATCACTAGGGACTGGTACAACGTCTGACGAGAAGTATGACGCCAATGAAGCGGCTGAGTGGGGTGCTTTCGGGTGGCTTATCGGATCCGATTTTTCGGCTCCACTGGTGGATATATTTACCCACGCAGGTAGTGACATGGTTGATTTCCACCTTGCTACAATTTTTCAAGCCCTTCAGTCTCATGACAATTACCTTCGAATTCAGGATGATACGCTAAGTGGAACACTGGCTTCTGTGGATATTGCCACAGAACAAAACTTGAATGATTTGGTAAAAGTTGGAGAGGCATTGTTGAAGAAACCGGTTTCGAGAGTGAATTTTGATACCAATAAATCCAAGCCTGTTCGTCCTGAGGTTACAAATGCAGAGGCTCTTGTGAGGATAGCGAGCGTTCTCTCTAAGGAGAGGGCTCAGAGGAGCAAGGTCGTTCATGAAAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

404

Amino Acids

44.3

Weight (kDa)

5.7

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34810 FvH4_4g24290
malus_domestica	MD08G1100500.v1.1 MD08G1104500.v1.1 MD15G1085400.v1.1
prunus_persica	Prupe.1G439500_v2.0.a1 Prupe.1G439500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482861 RchiOBHm_Chr6g0307251 RchiOBHm_Chr6g0307311 RchiOBHm_Chr6g0307331 RchiOBHm_Chr6g0307501 RchiOBHm_Chr6g0307671
rosa_laevigata	RLG00000010710 RLG00000010723
rosa_multiflora	Rmu_co8330847.1_g000001 Rmu_sc0000031.1_g000021 Rmu_ssc0000175.1_g000027
rosa_roxburghii	Rroxscaffold_6G00398860 Rroxscaffold_7G00160970
rosa_rugosa	Rorug03G0201800 Rorug06G0358100 Rorug06G0358700 Rorug06G0358900
rosa_samantha	Rh3AG250500 Rh3BG286900 Rh3BG287000 Rh6AG468600 Rh6AG468800 Rh6BG431100 Rh6BG432000 Rh6BG479100 Rh6BG479400 Rh6CG484800
rosa_wichuraiana	Rw3G022660 Rw6G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	884
AccII	CGCG	1 cut(s)	426
AciI	CCGC	2 cut(s)	754, 818
AclWI	GGATC	2 cut(s)	846, 859
AcsI	RAATTY	5 cut(s)	340, 601, 623, 966, 1084
AcuI	CTGAAG	3 cut(s)	113, 540, 926
AcyI	GRCGYC	1 cut(s)	807
AfaI	GTAC	2 cut(s)	193, 784
AfiI	CCNNNNNNNGG	3 cut(s)	38, 667, 727
AgeI	ACCGGT	1 cut(s)	1069
AgsI	TTSAA	7 cut(s)	397, 505, 606, 628, 935, 1030, 1063
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	3 cut(s)	127, 495, 519
AluI	AGCT	3 cut(s)	127, 495, 519
Alw26I	GTCTC	4 cut(s)	50, 352, 405, 951
AlwI	GGATC	2 cut(s)	846, 859
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	2 cut(s)	199, 663
ApeKI	GCWGC	3 cut(s)	254, 560, 650
ApoI	RAATTY	5 cut(s)	340, 601, 623, 966, 1084
AsiGI	ACCGGT	1 cut(s)	1069
AspLEI	GCGC	1 cut(s)	426
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	3 cut(s)	623, 625, 743
AsuII	TTCGAA	1 cut(s)	964
AxyI	CCTNAGG	1 cut(s)	1119
BamHI	GGATCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	1180
BarI	GAAGNNNNNNTAC	4 cut(s)	34, 66, 538, 570
BbvI	GCAGC	3 cut(s)	241, 572, 637
BccI	CCATC	4 cut(s)	62, 110, 134, 365
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	4 cut(s)	50, 352, 405, 951
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	3 cut(s)	189, 761, 773
BfuAI	ACCTGC	1 cut(s)	884
BisI	GCNGC	4 cut(s)	255, 561, 651, 819
BlsI	GCNGC	4 cut(s)	256, 562, 652, 820
Bme1390I	CCNGG	2 cut(s)	96, 662
BmiI	GGNNCC	4 cut(s)	100, 758, 853, 867
BmrFI	CCNGG	2 cut(s)	96, 662
BmsI	GCATC	2 cut(s)	139, 514
BpmI	CTGGAG	1 cut(s)	475
Bpu14I	TTCGAA	1 cut(s)	964
BpuMI	CCSGG	1 cut(s)	662
BsaHI	GRCGYC	1 cut(s)	807
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	94, 666
BsaWI	WCCGGW	1 cut(s)	1069
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 667, 727
Bse118I	RCCGGY	1 cut(s)	1069
Bse1I	ACTGG	6 cut(s)	141, 312, 479, 784, 876, 999
Bse21I	CCTNAGG	1 cut(s)	1119
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	94, 666
BseGI	GGATG	5 cut(s)	17, 102, 145, 154, 979
BseLI	CCNNNNNNNGG	3 cut(s)	38, 667, 727
BseMII	CTCAG	4 cut(s)	114, 813, 1110, 1193
BseNI	ACTGG	6 cut(s)	141, 312, 479, 784, 876, 999
BseRI	GAGGAG	1 cut(s)	1198
BseXI	GCAGC	3 cut(s)	241, 572, 637
BseYI	CCCAGC	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	201, 665
BshTI	ACCGGT	1 cut(s)	1069
BsiSI	CCGG	2 cut(s)	662, 1070
BslFI	GGGAC	3 cut(s)	199, 228, 790
BslI	CCNNNNNNNGG	3 cut(s)	38, 667, 727
BsmAI	GTCTC	4 cut(s)	50, 352, 405, 951
BsmFI	GGGAC	3 cut(s)	199, 228, 790
BsnI	GGCC	2 cut(s)	201, 665
Bso31I	GGTCTC	1 cut(s)	352
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	1 cut(s)	1180
Bsp143I	GATC	2 cut(s)	14, 851
BspACI	CCGC	2 cut(s)	754, 818
BspANI	GGCC	2 cut(s)	201, 665
BspCNI	CTCAG	4 cut(s)	115, 814, 1111, 1192
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	2 cut(s)	949, 1198
BspLI	GGNNCC	4 cut(s)	100, 758, 853, 867
BspMI	ACCTGC	1 cut(s)	884
BspPI	GGATC	2 cut(s)	846, 859
BspT104I	TTCGAA	1 cut(s)	964
BspTNI	GGTCTC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	1069
BsrI	ACTGG	6 cut(s)	141, 312, 479, 784, 876, 999
BssAI	RCCGGY	1 cut(s)	1069
BssECI	CCNNGG	2 cut(s)	94, 666
BssMI	GATC	2 cut(s)	14, 851
BssNI	GRCGYC	1 cut(s)	807
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	4 cut(s)	55, 242, 641, 744
BstACI	GRCGYC	1 cut(s)	807
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	2 cut(s)	159, 1156
BstDEI	CTNAG	9 cut(s)	59, 115, 123, 520, 822, 983, 1119, 1167, 1179
BstF5I	GGATG	5 cut(s)	17, 102, 145, 154, 979
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	17, 854
BstMAI	GTCTC	4 cut(s)	50, 352, 405, 951
BstMBI	GATC	2 cut(s)	14, 851
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 332, 671, 815
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	94, 660
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	241, 572, 637
BstX2I	RGATCY	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	851
Bsu36I	CCTNAGG	1 cut(s)	1119
BsuRI	GGCC	2 cut(s)	201, 665
BtsCI	GGATG	5 cut(s)	17, 102, 145, 154, 979
BtsIMutI	CAGTG	2 cut(s)	869, 992
BveI	ACCTGC	1 cut(s)	884
Cac8I	GCNNGC	2 cut(s)	159, 1156
CaiI	CAGNNNCTG	1 cut(s)	136
CciI	TCATGA	2 cut(s)	949, 1198
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	1069
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	2 cut(s)	192, 783
CspAI	ACCGGT	1 cut(s)	1069
CviAII	CATG	5 cut(s)	214, 904, 950, 1199, 1209
CviQI	GTAC	2 cut(s)	192, 783
DdeI	CTNAG	9 cut(s)	59, 115, 123, 520, 822, 983, 1119, 1167, 1179
DpnI	GATC	2 cut(s)	16, 853
DpnII	GATC	2 cut(s)	14, 851
DraI	TTTAAA	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	1180
Eco31I	GGTCTC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	265
Eco57I	CTGAAG	3 cut(s)	113, 540, 926
Eco81I	CCTNAGG	1 cut(s)	1119
EcoRI	GAATTC	2 cut(s)	623, 966
EcoRII	CCWGG	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	1180
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	5 cut(s)	217, 907, 953, 1202, 1212
FaqI	GGGAC	3 cut(s)	199, 228, 790
FatI	CATG	5 cut(s)	213, 903, 949, 1198, 1208
Fnu4HI	GCNGC	4 cut(s)	255, 561, 651, 819
FokI	GGATG	5 cut(s)	4, 89, 152, 161, 986
FriOI	GRGCYC	1 cut(s)	1180
Fsp4HI	GCNGC	4 cut(s)	255, 561, 651, 819
FspBI	CTAG	3 cut(s)	189, 761, 773
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	4 cut(s)	255, 561, 651, 819
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	201, 665
HapII	CCGG	2 cut(s)	662, 1070
HgaI	GACGC	1 cut(s)	815
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	807
Hin1II	CATG	5 cut(s)	217, 907, 953, 1202, 1212
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	119, 614
HpaII	CCGG	2 cut(s)	662, 1070
HphI	GGTGA	3 cut(s)	623, 625, 743
Hpy188I	TCNGA	7 cut(s)	124, 132, 538, 793, 851, 856, 1182
Hpy188III	TCNNGA	8 cut(s)	146, 281, 618, 950, 971, 1077, 1118, 1199
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	4 cut(s)	32, 391, 950, 971
HpyCH4III	ACNGT	4 cut(s)	55, 242, 641, 744
HpyCH4IV	ACGT	1 cut(s)	788
HpyCH4V	TGCA	3 cut(s)	152, 475, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 332, 671, 815
HpyF3I	CTNAG	9 cut(s)	59, 115, 123, 520, 822, 983, 1119, 1167, 1179
HpySE526I	ACGT	1 cut(s)	788
Hsp92I	GRCGYC	1 cut(s)	807
Hsp92II	CATG	5 cut(s)	217, 907, 953, 1202, 1212
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	14, 851
LmnI	GCTCC	2 cut(s)	871, 1185
Lsp1109I	GCAGC	3 cut(s)	241, 572, 637
LweI	GCATC	2 cut(s)	139, 514
MaeI	CTAG	3 cut(s)	189, 761, 773
MaeII	ACGT	1 cut(s)	788
MaeIII	GTNAC	4 cut(s)	205, 685, 899, 1123
MalI	GATC	2 cut(s)	16, 853
MboI	GATC	2 cut(s)	14, 851
MboII	GAAGA	4 cut(s)	292, 478, 566, 1075
MflI	RGATCY	1 cut(s)	851
MhlI	GDGCHC	1 cut(s)	1180
MluCI	AATT	9 cut(s)	340, 404, 587, 601, 623, 927, 955, 966, 1084
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	602, 1027
MnlI	CCTC	9 cut(s)	65, 77, 116, 1045, 1114, 1129, 1140, 1167, 1176
MseI	TTAA	3 cut(s)	353, 434, 591
MspI	CCGG	2 cut(s)	662, 1070
MspR9I	CCNGG	2 cut(s)	96, 662
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	158, 332, 671, 815
NciI	CCSGG	1 cut(s)	662
NdeII	GATC	2 cut(s)	14, 851
NlaIII	CATG	5 cut(s)	217, 907, 953, 1202, 1212
NlaIV	GGNNCC	4 cut(s)	100, 758, 853, 867
NmuCI	GTSAC	3 cut(s)	205, 685, 899
NspV	TTCGAA	1 cut(s)	964
PagI	TCATGA	2 cut(s)	949, 1198
PfeI	GAWTC	1 cut(s)	614
PinAI	ACCGGT	1 cut(s)	1069
PkrI	GCNGC	4 cut(s)	256, 562, 652, 820
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	4 cut(s)	100, 758, 853, 867
PsrI	GAACNNNNNNTAC	2 cut(s)	740, 772
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	851
RsaI	GTAC	2 cut(s)	193, 784
RsaNI	GTAC	2 cut(s)	192, 783
SaqAI	TTAA	3 cut(s)	353, 434, 591
SatI	GCNGC	4 cut(s)	255, 561, 651, 819
Sau3AI	GATC	2 cut(s)	14, 851
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	96, 662
SduI	GDGCHC	1 cut(s)	1180
SfaNI	GCATC	2 cut(s)	139, 514
SfuI	TTCGAA	1 cut(s)	964
SmiI	ATTTAAAT	1 cut(s)	592
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	9 cut(s)	340, 404, 587, 601, 623, 927, 955, 966, 1084
SsiI	CCGC	2 cut(s)	754, 818
SspMI	CTAG	3 cut(s)	189, 761, 773
StyD4I	CCNGG	2 cut(s)	94, 660
StyI	CCWWGG	1 cut(s)	666
SwaI	ATTTAAAT	1 cut(s)	592
TaaI	ACNGT	4 cut(s)	55, 242, 641, 744
TaiI	ACGT	1 cut(s)	791
TaqI	TCGA	3 cut(s)	282, 964, 1076
TasI	AATT	9 cut(s)	340, 404, 587, 601, 623, 927, 955, 966, 1084
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	821
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	3 cut(s)	353, 434, 591
Tru9I	TTAA	3 cut(s)	353, 434, 591
TscAI	CASTG	2 cut(s)	876, 999
TseFI	GTSAC	3 cut(s)	205, 685, 899
TseI	GCWGC	3 cut(s)	254, 560, 650
Tsp45I	GTSAC	3 cut(s)	205, 685, 899
TspDTI	ATGAA	4 cut(s)	246, 753, 828, 1187
TspRI	CASTG	2 cut(s)	876, 999
XapI	RAATTY	5 cut(s)	340, 601, 623, 966, 1084
XspI	CTAG	3 cut(s)	189, 761, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.