Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003990

Physical Location & Seq

Genomic Coordinates Reverse (-)

14268981 .. 14271387

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1143700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGGTACTCGCTAATGAGGGCAGGAGTGAACGCCGAAGTTGTGGAAGCATTCAACATCAACTACAACGCCAACAAAGTTTACCAGCACGATTTCGGCCACCGTCCCTATCAGGGTAATATTCAGAGCCTTACTGCTGCTGATCTCGACTGTTATGGGGCGGATGCATGGCTTCTTTCTCCTCCTTGCCAACCTTACACTCGACAAGGTCTCCCTAAGAAATCCGGCGAAGCTCGGGCATTTTCATTTCTCAACATTCTTGAGTTGATACCATACACACATCTCGACCTCCGATGGTGTTATTTGTGGAAAATGTTGTCGGATTTGAGGTCAATTCTTGGAAGTTTTATCTTAATTACATCTGATACTCATACAAAAATGATAGAGATATTGGGAAGAACAAATTTTGTTCTGCAGGAATTCATATTGAGTCTGTTACAGTTTGGTGTACCCTATTCCAGGTCACGCTATTTTTGCCTGGCAAAGAGGAAACCTTCAACCTTTTACAATCAAGTTTTCGATAATCAGCTTCTTTGCTCCCTAGGGCCATTATTTTGGGATGCAAATGCAGATGAGACAGTGTTCTCTGAACTTGATGAACCACAAGAGAGCCGGGATACGTTACTTGAATCTTGTGAGCCTATAGAAAGCTTTCTTGAATTCAAGAATTGCAGTGACCAGTTGGAGTCCGATTTTGGGGACACCACTACTGGTTCTACAAACACTGAAGGAATATTGGACAAAGATGAAGGGAATGGATATTGTAGTGGCATCGTAGATCAGTACATTGTTCCATTAAGCTTGGTAGAGAGGTGGGGAAGTGCCATGGGTATCCTTTTTCGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

283

Amino Acids

32.18

Weight (kDa)

4.74

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25480
fragaria_vesca	FvH4_2g29650
malus_domestica	MD08G1143700.v1.1 MD08G1144900.v1.1 MD15G1120500.v1.1 MD15G1439700.v1.1
prunus_persica	Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1
pyrus_communis	pycom08g12220 pycom15g10870
rosa_chinensis	RchiOBHm_Chr1g0355831 RchiOBHm_Chr6g0298621
rosa_laevigata	RLG00000011498
rosa_multiflora	Rmu_sc0004076.1_g000002 Rmu_sc0004500.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169480
rosa_rugosa	Rorug03G0271800 Rorug03G0271800 Rorug03G0271900 Rorug06G0281800
rosa_samantha	Rh2BG320400 Rh2CG300400 Rh2DG337600 Rh4AG109400 Rh4BG194000 Rh4DG193200 Rh6BG400900 Rh6CG406900 Rh6DG393500
rosa_wichuraiana	Rw6G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	3 cut(s)	403, 419, 659
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	3 cut(s)	8, 450, 785
AfiI	CCNNNNNNNGG	3 cut(s)	113, 459, 696
AgsI	TTSAA	5 cut(s)	55, 498, 629, 659, 664
AjnI	CCWGG	2 cut(s)	458, 477
AluBI	AGCT	4 cut(s)	233, 529, 651, 801
AluI	AGCT	4 cut(s)	233, 529, 651, 801
Alw26I	GTCTC	2 cut(s)	215, 569
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	2 cut(s)	97, 545
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	3 cut(s)	403, 419, 659
Asp700I	GAANNNNTTC	1 cut(s)	651
AspA2I	CCTAGG	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	614
AvaI	CYCGRG	1 cut(s)	234
AvrII	CCTAGG	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	460, 479
BciVI	GTATCC	2 cut(s)	610, 842
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	2 cut(s)	215, 569
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	2 cut(s)	413, 642
BfuI	GTATCC	2 cut(s)	610, 842
BisI	GCNGC	1 cut(s)	138
BlnI	CCTAGG	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	3 cut(s)	460, 479, 614
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	545
BmrFI	CCNGG	3 cut(s)	460, 479, 614
BmsI	GCATC	3 cut(s)	154, 550, 780
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	541, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 459, 696
Bse1I	ACTGG	2 cut(s)	679, 715
BseBI	CCWGG	2 cut(s)	460, 479
BseDI	CCNNGG	2 cut(s)	541, 825
BseGI	GGATG	2 cut(s)	169, 565
BseLI	CCNNNNNNNGG	3 cut(s)	113, 459, 696
BseNI	ACTGG	2 cut(s)	679, 715
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	99, 547
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	225, 613
BslFI	GGGAC	2 cut(s)	90, 713
BslI	CCNNNNNNNGG	3 cut(s)	113, 459, 696
BsmAI	GTCTC	2 cut(s)	215, 569
BsmFI	GGGAC	2 cut(s)	90, 713
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	99, 547
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	142, 778
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	99, 547
BspMAI	CTGCAG	1 cut(s)	417
BspTNI	GGTCTC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	679, 715
BssECI	CCNNGG	2 cut(s)	541, 825
BssMI	GATC	2 cut(s)	142, 778
BssT1I	CCWWGG	2 cut(s)	541, 825
Bst2UI	CCWGG	2 cut(s)	460, 479
Bst4CI	ACNGT	4 cut(s)	104, 152, 441, 580
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	825
BstENI	CCTNNNNNAGG	1 cut(s)	457
BstF5I	GGATG	2 cut(s)	169, 565
BstKTI	GATC	2 cut(s)	145, 781
BstMAI	GTCTC	2 cut(s)	215, 569
BstMBI	GATC	2 cut(s)	142, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNI	CCWGG	2 cut(s)	460, 479
BstSCI	CCNGG	3 cut(s)	458, 477, 612
BstSFI	CTRYAG	2 cut(s)	413, 642
BstV1I	GCAGC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	555
BsuI	GTATCC	2 cut(s)	610, 842
BsuRI	GGCC	2 cut(s)	99, 547
BtgI	CCRYGG	1 cut(s)	825
BtsCI	GGATG	2 cut(s)	169, 565
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	3 cut(s)	585, 679, 723
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	3 cut(s)	7, 449, 784
CviAII	CATG	2 cut(s)	168, 826
CviQI	GTAC	3 cut(s)	7, 449, 784
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	144, 780
DpnII	GATC	2 cut(s)	142, 778
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	541, 825
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	457
EcoRI	GAATTC	2 cut(s)	419, 659
EcoRII	CCWGG	2 cut(s)	458, 477
EcoT14I	CCWWGG	2 cut(s)	541, 825
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	541, 825
FaeI	CATG	2 cut(s)	171, 829
FaiI	YATR	7 cut(s)	156, 169, 274, 372, 425, 644, 827
FaqI	GGGAC	2 cut(s)	90, 713
FatI	CATG	2 cut(s)	167, 825
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	176, 572
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	99, 547
HapII	CCGG	2 cut(s)	225, 613
Hin1II	CATG	2 cut(s)	171, 829
HindIII	AAGCTT	2 cut(s)	649, 799
HinfI	GANTC	3 cut(s)	430, 629, 686
HpaII	CCGG	2 cut(s)	225, 613
Hpy166II	GTNNAC	3 cut(s)	31, 82, 449
Hpy188I	TCNGA	6 cut(s)	126, 293, 322, 364, 589, 691
Hpy188III	TCNNGA	5 cut(s)	146, 260, 284, 656, 664
Hpy8I	GTNNAC	3 cut(s)	31, 82, 449
HpyAV	CCTTC	3 cut(s)	504, 722, 743
HpyCH4III	ACNGT	4 cut(s)	104, 152, 441, 580
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	5 cut(s)	167, 415, 563, 569, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	620
Hsp92II	CATG	2 cut(s)	171, 829
Kzo9I	GATC	2 cut(s)	142, 778
LmnI	GCTCC	1 cut(s)	542
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	3 cut(s)	154, 550, 780
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	4 cut(s)	435, 462, 621, 674
MalI	GATC	2 cut(s)	144, 780
MboI	GATC	2 cut(s)	142, 778
MboII	GAAGA	1 cut(s)	408
MluCI	AATT	6 cut(s)	333, 354, 403, 419, 659, 667
MlyI	GAGTC	2 cut(s)	439, 695
MmeI	TCCRAC	2 cut(s)	300, 663
MnlI	CCTC	6 cut(s)	12, 192, 299, 321, 480, 804
Mph1103I	ATGCAT	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	2 cut(s)	353, 797
MspI	CCGG	2 cut(s)	225, 613
MspR9I	CCNGG	3 cut(s)	460, 479, 614
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	2 cut(s)	460, 479
MwoI	GCNNNNNNNGC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	614
NcoI	CCATGG	1 cut(s)	825
NdeII	GATC	2 cut(s)	142, 778
NlaIII	CATG	2 cut(s)	171, 829
NmuCI	GTSAC	2 cut(s)	462, 674
NsiI	ATGCAT	1 cut(s)	169
PctI	GAATGC	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	629
PflFI	GACNNNGTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	2 cut(s)	438, 694
PpsI	GAGTC	2 cut(s)	438, 694
Psp6I	CCWGG	2 cut(s)	458, 477
PspGI	CCWGG	2 cut(s)	458, 477
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	207
RsaI	GTAC	3 cut(s)	8, 450, 785
RsaNI	GTAC	3 cut(s)	7, 449, 784
SaqAI	TTAA	2 cut(s)	353, 797
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	142, 778
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	2 cut(s)	439, 695
ScrFI	CCNGG	3 cut(s)	460, 479, 614
SfaNI	GCATC	3 cut(s)	154, 550, 780
SfcI	CTRYAG	2 cut(s)	413, 642
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	6 cut(s)	333, 354, 403, 419, 659, 667
SsiI	CCGC	1 cut(s)	161
SspI	AATATT	2 cut(s)	121, 735
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	3 cut(s)	458, 477, 612
StyI	CCWWGG	2 cut(s)	541, 825
TaaI	ACNGT	4 cut(s)	104, 152, 441, 580
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	4 cut(s)	147, 202, 285, 519
TasI	AATT	6 cut(s)	333, 354, 403, 419, 659, 667
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	2 cut(s)	353, 797
Tru9I	TTAA	2 cut(s)	353, 797
TscAI	CASTG	3 cut(s)	585, 679, 730
TseFI	GTSAC	2 cut(s)	462, 674
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	2 cut(s)	462, 674
TspDTI	ATGAA	4 cut(s)	234, 412, 612, 762
TspRI	CASTG	3 cut(s)	585, 679, 730
Tth111I	GACNNNGTC	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	457
XapI	RAATTY	3 cut(s)	403, 419, 659
XmaJI	CCTAGG	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.