Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003990

Physical Location & Seq

Genomic Coordinates Reverse (-)

53964810 .. 53970735

Gene Structure 5926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1439700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGGTACTCGCTAATGAGGGTAGGAGTGAACGCCGAAGTTGTGGAAGCGTTCGACATCAACGACAATGCCAACAAAGTTCACCAGCATAATTTCGGCCACCGTCCCTATCAGTTGCCTTTGGAGCAAGTTGATGGAAACATTGGAGGAGTTTGTGAGGGCCAATTTGTTGAGTTCTGCAAAGACATTTGGTTGGATTTGTTTGCCACTGCTATTTGGTCTGTTGGTCTCCATCATCTGCAATTAGTTTTCTTGAAGACTCCAGTTGAGCTTTTGGGAGAGAAGGATTTTGATATGTGTTTCTTCTTCTCCATTTGTTTCTTAGTTCGATGGAATTTCCTTGCCGTCTCGGAACTGGACGTAGGCTTACGCCGAACCAGTATAAATCATTGTGTTCTTTGGATTATTTGTCTTGTCATATTTTGCCGTTGTAATTTATTGGTTTCATATTTGACGCTTCCGCACAACAAGTACCATTTGTTTCGGTGTTTGGGTAATATTCAGAGCCTTACTGCTGCTGATCTCGACTGTTTGGGGCGGATGCATGACTTCTTTCTCCTCCTTGCCAACTTTACACTCGACAAGATTTTCACTAGTTACTTATGGATAGGTCTCCAGAAGCAATCCGGCGATGCTCAGGCATTTTCATTTCTCAACATTCTTGAGTTGATACTACACACATCTCGACCAATGGTGTTATTTGTGGAAAATGTTGTCGGATTTGAGACATCTGATACGCATACAAAAATGATAGAGATATTGGGAAGAACAAATTTTGTTCTGCAGGAGTTCATATTGAGTCTGTTACAGTTTGGCGAACCCTATTCCAGGCCACGCTATTTTTGCCTGGAGGAAACCTTGAACCTTTCACAACAAGTTTTCAATAATCAGCTTCTTCGCTCGCTAGGGCCATTATTTGGGGATGCAAATGCTGATGAGACAGTGTTCTCTAAACTCGATGAACCACAAGAGAGCCGGGATACGTTACTTGAATATTGTGAGCCTATAGAAAGCTTTCTTGAATTCAAGAATTGCAGTGACCAATCGGAGTCCAATTTTGTGGGCACCACTACTGGTTCTACAAATACTGAAGGAATATTGAAGAAAGATGAAGGGAGTGGATTTTGTAGTGGCATCGTAGATCAGTACATTGTTCCATTAAGCTTGGTAGAGAGGTGGGGAAGTGCCATGGATATCCTTCTTCGTTTCTACGTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

407

Amino Acids

46.46

Weight (kDa)

4.9

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25480
fragaria_vesca	FvH4_2g29650
malus_domestica	MD08G1143700.v1.1 MD08G1144900.v1.1 MD15G1120500.v1.1 MD15G1439700.v1.1
prunus_persica	Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1
pyrus_communis	pycom08g12220 pycom15g10870
rosa_chinensis	RchiOBHm_Chr1g0355831 RchiOBHm_Chr6g0298621
rosa_laevigata	RLG00000011498
rosa_multiflora	Rmu_sc0004076.1_g000002 Rmu_sc0004500.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169480
rosa_rugosa	Rorug03G0271800 Rorug03G0271800 Rorug03G0271900 Rorug06G0281800
rosa_samantha	Rh2BG320400 Rh2CG300400 Rh2DG337600 Rh4AG109400 Rh4BG194000 Rh4DG193200 Rh6BG400900 Rh6CG406900 Rh6DG393500
rosa_wichuraiana	Rw6G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1064
AccB7I	CCANNNNNTGG	1 cut(s)	917
AciI	CCGC	2 cut(s)	461, 538
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	3 cut(s)	334, 772, 1022
AcuI	CTGAAG	1 cut(s)	1110
AfaI	GTAC	3 cut(s)	8, 473, 1148
AfiI	CCNNNNNNNGG	2 cut(s)	828, 917
AgsI	TTSAA	7 cut(s)	256, 862, 883, 992, 1022, 1027, 1102
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	2 cut(s)	827, 846
AluBI	AGCT	4 cut(s)	271, 892, 1014, 1164
AluI	AGCT	4 cut(s)	271, 892, 1014, 1164
Alw26I	GTCTC	5 cut(s)	233, 352, 617, 719, 932
AoxI	GGCC	4 cut(s)	97, 160, 830, 908
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	334, 772, 1022
Asp700I	GAANNNNTTC	1 cut(s)	1014
AspS9I	GGNCC	2 cut(s)	160, 908
AsuC2I	CCSGG	1 cut(s)	977
AsuHPI	GGTGA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	1067
BanI	GGYRCC	1 cut(s)	1064
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	3 cut(s)	128, 240, 324
BceAI	ACGGC	2 cut(s)	329, 411
BciT130I	CCWGG	2 cut(s)	829, 848
BciVI	GTATCC	1 cut(s)	973
BcnI	CCSGG	1 cut(s)	977
BcoDI	GTCTC	5 cut(s)	233, 352, 617, 719, 932
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	594, 905
BfmI	CTRYAG	2 cut(s)	782, 1005
BfuI	GTATCC	1 cut(s)	973
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	3 cut(s)	829, 848, 977
BmgT120I	GGNCC	2 cut(s)	160, 908
BmiI	GGNNCC	1 cut(s)	1066
BmrFI	CCNGG	3 cut(s)	829, 848, 977
BmsI	GCATC	4 cut(s)	531, 622, 913, 1143
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	3 cut(s)	246, 599, 869
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	977
BsaI	GGTCTC	2 cut(s)	233, 617
BsaJI	CCNNGG	1 cut(s)	1188
Bsc4I	CCNNNNNNNGG	2 cut(s)	828, 917
Bse1I	ACTGG	5 cut(s)	263, 360, 378, 1078, 1216
BseBI	CCWGG	2 cut(s)	829, 848
BseDI	CCNNGG	1 cut(s)	1188
BseGI	GGATG	2 cut(s)	546, 928
BseLI	CCNNNNNNNGG	2 cut(s)	828, 917
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	5 cut(s)	263, 360, 378, 1078, 1216
BseRI	GAGGAG	2 cut(s)	162, 548
BseSI	GKGCMC	1 cut(s)	1067
BseXI	GCAGC	1 cut(s)	502
BshFI	GGCC	4 cut(s)	99, 162, 832, 910
BshNI	GGYRCC	1 cut(s)	1064
BsiSI	CCGG	2 cut(s)	627, 976
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	828, 917
BsmAI	GTCTC	5 cut(s)	233, 352, 617, 719, 932
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	4 cut(s)	99, 162, 832, 910
Bso31I	GGTCTC	2 cut(s)	233, 617
Bsp1286I	GDGCHC	1 cut(s)	1067
Bsp143I	GATC	2 cut(s)	520, 1141
Bsp19I	CCATGG	1 cut(s)	1188
BspACI	CCGC	2 cut(s)	461, 538
BspANI	GGCC	4 cut(s)	99, 162, 832, 910
BspCNI	CTCAG	1 cut(s)	649
BspLI	GGNNCC	1 cut(s)	1066
BspMAI	CTGCAG	1 cut(s)	786
BspT107I	GGYRCC	1 cut(s)	1064
BspTNI	GGTCTC	2 cut(s)	233, 617
BsrI	ACTGG	5 cut(s)	263, 360, 378, 1078, 1216
BssECI	CCNNGG	1 cut(s)	1188
BssMI	GATC	2 cut(s)	520, 1141
BssT1I	CCWWGG	1 cut(s)	1188
Bst2UI	CCWGG	2 cut(s)	829, 848
Bst4CI	ACNGT	4 cut(s)	104, 530, 810, 943
BstC8I	GCNNGC	1 cut(s)	902
BstDEI	CTNAG	2 cut(s)	322, 636
BstDSI	CCRYGG	1 cut(s)	1188
BstENI	CCTNNNNNAGG	1 cut(s)	826
BstF5I	GGATG	2 cut(s)	546, 928
BstKTI	GATC	2 cut(s)	523, 1144
BstMAI	GTCTC	5 cut(s)	233, 352, 617, 719, 932
BstMBI	GATC	2 cut(s)	520, 1141
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 843
BstNI	CCWGG	2 cut(s)	829, 848
BstSCI	CCNGG	3 cut(s)	827, 846, 975
BstSFI	CTRYAG	2 cut(s)	782, 1005
BstSLI	GKGCMC	1 cut(s)	1067
BstV1I	GCAGC	1 cut(s)	502
BstV2I	GAAGAC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	1060
BsuI	GTATCC	1 cut(s)	973
BsuRI	GGCC	4 cut(s)	99, 162, 832, 910
BtgI	CCRYGG	1 cut(s)	1188
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	2 cut(s)	546, 928
BtsI	GCAGTG	2 cut(s)	207, 1042
BtsIMutI	CAGTG	3 cut(s)	207, 948, 1042
Cac8I	GCNNGC	1 cut(s)	902
Cfr13I	GGNCC	2 cut(s)	160, 908
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	3 cut(s)	7, 472, 1147
CviAII	CATG	2 cut(s)	545, 1189
CviQI	GTAC	3 cut(s)	7, 472, 1147
DdeI	CTNAG	2 cut(s)	322, 636
DpnI	GATC	2 cut(s)	522, 1143
DpnII	GATC	2 cut(s)	520, 1141
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	1188
Eco31I	GGTCTC	2 cut(s)	233, 617
Eco32I	GATATC	1 cut(s)	1195
Eco57I	CTGAAG	1 cut(s)	1110
EcoNI	CCTNNNNNAGG	1 cut(s)	826
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	2 cut(s)	827, 846
EcoRV	GATATC	1 cut(s)	1195
EcoT14I	CCWWGG	1 cut(s)	1188
EcoT22I	ATGCAT	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	1188
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	2 cut(s)	548, 1192
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	544, 1188
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	2 cut(s)	553, 935
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	2 cut(s)	594, 905
GluI	GCNGC	1 cut(s)	516
GsuI	CTGGAG	3 cut(s)	246, 599, 869
HaeIII	GGCC	4 cut(s)	99, 162, 832, 910
HapII	CCGG	2 cut(s)	627, 976
HgaI	GACGC	1 cut(s)	463
Hin1II	CATG	2 cut(s)	548, 1192
HindIII	AAGCTT	2 cut(s)	1012, 1162
HinfI	GANTC	3 cut(s)	259, 799, 1049
HpaII	CCGG	2 cut(s)	627, 976
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	31, 82
Hpy188I	TCNGA	5 cut(s)	352, 504, 719, 733, 1048
Hpy188III	TCNNGA	7 cut(s)	253, 524, 616, 662, 684, 1019, 1027
Hpy8I	GTNNAC	2 cut(s)	31, 82
HpyAV	CCTTC	4 cut(s)	277, 1085, 1106, 1208
HpyCH4III	ACNGT	4 cut(s)	104, 530, 810, 943
HpyCH4IV	ACGT	3 cut(s)	360, 983, 1212
HpyCH4V	TGCA	6 cut(s)	180, 241, 544, 784, 926, 1035
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 843
HpyF3I	CTNAG	2 cut(s)	322, 636
HpySE526I	ACGT	3 cut(s)	360, 983, 1212
Hsp92II	CATG	2 cut(s)	548, 1192
Kzo9I	GATC	2 cut(s)	520, 1141
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	4 cut(s)	531, 622, 913, 1143
MaeI	CTAG	2 cut(s)	594, 905
MaeII	ACGT	3 cut(s)	360, 983, 1212
MaeIII	GTNAC	4 cut(s)	596, 804, 984, 1037
MalI	GATC	2 cut(s)	522, 1143
MboI	GATC	2 cut(s)	520, 1141
MboII	GAAGA	7 cut(s)	268, 295, 298, 777, 887, 1114, 1193
MhlI	GDGCHC	1 cut(s)	1067
MluCI	AATT	9 cut(s)	91, 164, 242, 334, 433, 772, 1022, 1030, 1054
MlyI	GAGTC	3 cut(s)	253, 808, 1058
MmeI	TCCRAC	2 cut(s)	174, 697
MnlI	CCTC	6 cut(s)	12, 140, 151, 569, 844, 1167
Mph1103I	ATGCAT	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	1014
MseI	TTAA	1 cut(s)	1160
MspI	CCGG	2 cut(s)	627, 976
MspR9I	CCNGG	3 cut(s)	829, 848, 977
MvaI	CCWGG	2 cut(s)	829, 848
MwoI	GCNNNNNNNGC	2 cut(s)	124, 843
NciI	CCSGG	1 cut(s)	977
NcoI	CCATGG	1 cut(s)	1188
NdeII	GATC	2 cut(s)	520, 1141
NlaIII	CATG	2 cut(s)	548, 1192
NlaIV	GGNNCC	1 cut(s)	1066
NmuCI	GTSAC	1 cut(s)	1037
NsiI	ATGCAT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	1014
PflMI	CCANNNNNTGG	1 cut(s)	917
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	3 cut(s)	253, 807, 1057
PpsI	GAGTC	3 cut(s)	253, 807, 1057
Psp6I	CCWGG	2 cut(s)	827, 846
PspGI	CCWGG	2 cut(s)	827, 846
PspN4I	GGNNCC	1 cut(s)	1066
PspPI	GGNCC	2 cut(s)	160, 908
PstI	CTGCAG	1 cut(s)	786
RsaI	GTAC	3 cut(s)	8, 473, 1148
RsaNI	GTAC	3 cut(s)	7, 472, 1147
SaqAI	TTAA	1 cut(s)	1160
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	520, 1141
Sau96I	GGNCC	2 cut(s)	160, 908
SchI	GAGTC	3 cut(s)	253, 808, 1058
ScrFI	CCNGG	3 cut(s)	829, 848, 977
SduI	GDGCHC	1 cut(s)	1067
SfaNI	GCATC	4 cut(s)	531, 622, 913, 1143
SfcI	CTRYAG	2 cut(s)	782, 1005
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	9 cut(s)	91, 164, 242, 334, 433, 772, 1022, 1030, 1054
SsiI	CCGC	2 cut(s)	461, 538
SspI	AATATT	3 cut(s)	499, 995, 1098
SspMI	CTAG	2 cut(s)	594, 905
StyD4I	CCNGG	3 cut(s)	827, 846, 975
StyI	CCWWGG	1 cut(s)	1188
TaaI	ACNGT	4 cut(s)	104, 530, 810, 943
TaiI	ACGT	3 cut(s)	363, 986, 1215
TaqI	TCGA	6 cut(s)	54, 328, 525, 579, 685, 957
TasI	AATT	9 cut(s)	91, 164, 242, 334, 433, 772, 1022, 1030, 1054
TatI	WGTACW	1 cut(s)	1146
Tru1I	TTAA	1 cut(s)	1160
Tru9I	TTAA	1 cut(s)	1160
TscAI	CASTG	3 cut(s)	214, 948, 1042
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	5 cut(s)	435, 636, 781, 975, 1125
TspRI	CASTG	3 cut(s)	214, 948, 1042
Van91I	CCANNNNNTGG	1 cut(s)	917
XagI	CCTNNNNNAGG	1 cut(s)	826
XapI	RAATTY	3 cut(s)	334, 772, 1022
XmnI	GAANNNNTTC	1 cut(s)	1014
XspI	CTAG	2 cut(s)	594, 905
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.