Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003990

Physical Location & Seq

Genomic Coordinates Forward (+)

34898450 .. 34930062

Gene Structure 31613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG300400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTTAAGACGGAAGAAGATCCAGGTTGCTATTCAAGGGCATCTAACTCTGCTTCTGAGCCTGTGGTAGATGTACAAATGAATCTGATCTCAATTGATATGGAGCGAATGTATGGCTTCTGTCTCCTCCTTGCCAACCCTATACTAGACAAGATTCTTGAGTTGATACCACACACCTCGCAACCTCCAATAATGTTATTTGTGGAAAATGTTGTTGGATTTGAGACATCTGATACACATGGAAAAATGATAGAGATATTGAGAAGAAGTGATTTTGTTACACAGGAGTTCATATTGAGTCCCTTGCAGTTTGGTGTACCATATTCCAGGCCACGCTATTTTTGCCCGGCAAAGAGGAAACCGTCAACCTTTCATAGTCAACTTTTCAATAATCAGCTTCTTTGGTCCCCAAAGCCCTTATTTGGGCATACAAATGCGGATGACAAAGTGTTCTGTGAACTTGATGAGCCGCAAGGTTGCTTGGATAAGTTGCTTGAATCTTGTGAGCCAATAGAAAGCTTTCTTGAATTCAAGAATTGCCCTGATCAGCCGAACTTTGTGGACAGCACCACTGTTTATACAGATACCATTAGAGTATTGGAGAAAGATGAAGAGAATGGGTGTTGTACTAGCACCTTGGATCAGTACTCTGTTCCCTCAAGCTTGAGAGAGATGGGGAAGTGCCATGGTTCTCGAAGATTGGGGCTCTTGGTAAAAAAAACCATGGAGAAGAGATGGAAGACTACATTGGTACTAAGAACCCATTTTTCTACCAATTTGTTTGGTGAAACCCAGTTGGGCTTTCAAATTCTGGGGTTCTTCAAGGATTGGTTGGGGAAACCCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

282

Amino Acids

32.29

Weight (kDa)

5.47

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25480
fragaria_vesca	FvH4_2g29650
malus_domestica	MD08G1143700.v1.1 MD08G1144900.v1.1 MD15G1120500.v1.1 MD15G1439700.v1.1
prunus_persica	Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1
pyrus_communis	pycom08g12220 pycom15g10870
rosa_chinensis	RchiOBHm_Chr1g0355831 RchiOBHm_Chr6g0298621
rosa_laevigata	RLG00000011498
rosa_multiflora	Rmu_sc0004076.1_g000002 Rmu_sc0004500.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169480
rosa_rugosa	Rorug03G0271800 Rorug03G0271800 Rorug03G0271900 Rorug06G0281800
rosa_samantha	Rh2BG320400 Rh2CG300400 Rh2DG337600 Rh4AG109400 Rh4BG194000 Rh4DG193200 Rh6BG400900 Rh6CG406900 Rh6DG393500
rosa_wichuraiana	Rw6G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	437, 470
AclWI	GGATC	2 cut(s)	14, 648
AcsI	RAATTY	2 cut(s)	527, 807
AfaI	GTAC	5 cut(s)	75, 318, 628, 647, 753
AfiI	CCNNNNNNNGG	2 cut(s)	422, 423
AgsI	TTSAA	7 cut(s)	36, 388, 497, 527, 532, 806, 823
AjnI	CCWGG	2 cut(s)	22, 326
AjuI	GAANNNNNNNTTGG	4 cut(s)	198, 230, 731, 763
AluBI	AGCT	3 cut(s)	397, 519, 663
AluI	AGCT	3 cut(s)	397, 519, 663
Alw26I	GTCTC	2 cut(s)	128, 218
AlwI	GGATC	2 cut(s)	14, 648
AoxI	GGCC	1 cut(s)	329
ApoI	RAATTY	2 cut(s)	527, 807
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	746
BccI	CCATC	2 cut(s)	667, 729
BciT130I	CCWGG	2 cut(s)	24, 328
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	128, 218
BfaI	CTAG	3 cut(s)	146, 630, 847
BisI	GCNGC	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	471
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	3 cut(s)	24, 328, 347
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	3 cut(s)	24, 328, 347
BmrI	ACTGGG	1 cut(s)	787
BmsI	GCATC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	787
BpiI	GAAGAC	1 cut(s)	746
BpuEI	CTTGAG	3 cut(s)	179, 643, 685
BpuMI	CCSGG	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	636, 685, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 423
Bse1I	ACTGG	1 cut(s)	793
BseBI	CCWGG	2 cut(s)	24, 328
BseDI	CCNNGG	3 cut(s)	636, 685, 723
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	422, 423
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	2 cut(s)	285, 391
BslI	CCNNNNNNNGG	2 cut(s)	422, 423
BsmAI	GTCTC	2 cut(s)	128, 218
BsmFI	GGGAC	2 cut(s)	285, 391
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp1407I	TGTACA	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	19, 87, 544, 640
Bsp19I	CCATGG	2 cut(s)	685, 723
BspACI	CCGC	2 cut(s)	437, 470
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	14, 648
BsrGI	TGTACA	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	3 cut(s)	636, 685, 723
BssMI	GATC	4 cut(s)	19, 87, 544, 640
BssT1I	CCWWGG	3 cut(s)	636, 685, 723
Bst2UI	CCWGG	2 cut(s)	24, 328
Bst4CI	ACNGT	2 cut(s)	363, 574
Bst6I	CTCTTC	2 cut(s)	606, 725
BstAUI	TGTACA	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	57, 755
BstDSI	CCRYGG	2 cut(s)	685, 723
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	4 cut(s)	22, 90, 547, 643
BstMAI	GTCTC	2 cut(s)	128, 218
BstMBI	GATC	4 cut(s)	19, 87, 544, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	2 cut(s)	24, 328
BstSCI	CCNGG	3 cut(s)	22, 326, 345
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	2 cut(s)	685, 723
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	5 cut(s)	74, 317, 627, 646, 752
CviAII	CATG	3 cut(s)	239, 686, 724
CviQI	GTAC	5 cut(s)	74, 317, 627, 646, 752
DdeI	CTNAG	2 cut(s)	57, 755
DpnI	GATC	4 cut(s)	21, 89, 546, 642
DpnII	GATC	4 cut(s)	19, 87, 544, 640
Eam1104I	CTCTTC	2 cut(s)	606, 725
EarI	CTCTTC	2 cut(s)	606, 725
Eco130I	CCWWGG	3 cut(s)	636, 685, 723
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	22, 326
EcoT14I	CCWWGG	3 cut(s)	636, 685, 723
EcoT38I	GRGCYC	1 cut(s)	708
ErhI	CCWWGG	3 cut(s)	636, 685, 723
FaeI	CATG	3 cut(s)	242, 689, 727
FaqI	GGGAC	2 cut(s)	285, 391
FatI	CATG	3 cut(s)	238, 685, 723
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	470
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	1 cut(s)	470
FspBI	CTAG	3 cut(s)	146, 630, 847
GluI	GCNGC	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	3 cut(s)	242, 689, 727
HincII	GTYRAC	2 cut(s)	366, 380
HindII	GTYRAC	2 cut(s)	366, 380
HindIII	AAGCTT	2 cut(s)	517, 661
HinfI	GANTC	4 cut(s)	82, 154, 298, 497
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	797
Hpy166II	GTNNAC	5 cut(s)	317, 366, 380, 458, 562
Hpy188I	TCNGA	3 cut(s)	58, 87, 232
Hpy188III	TCNNGA	4 cut(s)	158, 524, 532, 693
Hpy8I	GTNNAC	5 cut(s)	317, 366, 380, 458, 562
HpyCH4III	ACNGT	2 cut(s)	363, 574
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	2 cut(s)	57, 755
Hsp92II	CATG	3 cut(s)	242, 689, 727
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	19, 87, 544, 640
LmnI	GCTCC	1 cut(s)	103
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	3 cut(s)	146, 630, 847
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	21, 89, 546, 642
MboI	GATC	4 cut(s)	19, 87, 544, 640
MboII	GAAGA	8 cut(s)	26, 29, 276, 623, 708, 742, 751, 811
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	5 cut(s)	93, 527, 535, 775, 807
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	5 cut(s)	137, 187, 195, 348, 667
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	3 cut(s)	24, 328, 347
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	2 cut(s)	24, 328
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	2 cut(s)	685, 723
NdeII	GATC	4 cut(s)	19, 87, 544, 640
NlaIII	CATG	3 cut(s)	242, 689, 727
NlaIV	GGNNCC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	82, 154, 497
PkrI	GCNGC	1 cut(s)	471
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	22, 326
PspGI	CCWGG	2 cut(s)	22, 326
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	5 cut(s)	75, 318, 628, 647, 753
RsaNI	GTAC	5 cut(s)	74, 317, 627, 646, 752
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	470
Sau3AI	GATC	4 cut(s)	19, 87, 544, 640
Sau96I	GGNCC	1 cut(s)	405
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	3 cut(s)	24, 328, 347
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	1 cut(s)	50
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	3 cut(s)	158, 658, 664
SmoI	CTYRAG	3 cut(s)	158, 658, 664
Sse9I	AATT	5 cut(s)	93, 527, 535, 775, 807
SsiI	CCGC	2 cut(s)	437, 470
SspMI	CTAG	3 cut(s)	146, 630, 847
StyD4I	CCNGG	3 cut(s)	22, 326, 345
StyI	CCWWGG	3 cut(s)	636, 685, 723
TaaI	ACNGT	2 cut(s)	363, 574
TaqI	TCGA	1 cut(s)	694
TasI	AATT	5 cut(s)	93, 527, 535, 775, 807
TatI	WGTACW	3 cut(s)	73, 626, 645
TauI	GCSGC	1 cut(s)	472
TfiI	GAWTC	3 cut(s)	82, 154, 497
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	577
TspDTI	ATGAA	4 cut(s)	95, 280, 362, 624
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	2 cut(s)	527, 807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	3 cut(s)	146, 630, 847
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.