Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003990

Physical Location & Seq

Genomic Coordinates Reverse (-)

7304908 .. 7306679

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10870.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATGTTATTTGTGGAAAATGTTGTGGGATTTGAGACATCTGATACGCATACAAAAATGATAGAGATATTGGGAAGAACAAATTTTGTTATGCAGGAGTTCATATTGAGTCCGTTACAGTTTGGTGTACCCTATTCCAGGCCACGCTATTTTTGCCTGGCAAAGAGGAAACCTTCAACCTTTCACAATCAAGTTTTCGATAATCAGCTTCTTCACTCGCTGGGGCCATTATTAGGGGATACAAATGCCGATGAGACAGTGCTCTGTGAACTTGATGAACCACAAAAGAGCCAGGATAAGTTACTTGAATCTTGTGAGCCTATAGAAAGCTTTCTTGAATTCAAGAATTGCAGTGACCAATCGGAGTCCAATTTTGTGGACACCACTACTAGTTCTACAGATACTGATGGAATATTGGAGAAAGATGAAGGGAATGGATATTGTACCGGCATCGTAGATCAGTACATTGTTCCATTAAGCTTGATAGAGAGGTGGGGAAGTGCCATGGATATAGTCTATCCTGATTCGAAACGATGTTGTTGTTTTACAAAAAGTTACTATCGATATGTGAAGGGTACAGGCTCCCTTTTGGCAACTCTGCAGCCAAAGAATAAGGATAAAACATCTTCATTGAAGGAGCATCACCTTCGATACTTTTCCCCAAGGGAGGTTGCTAATTTGCATTCTCTCCCGGAAGATTTTCAGTTTCCACAGCAGATAAGCCTCAGGCAGCGTTATGCATTACTGGGGAACAGTTTGAGTATAGCAGTGGTTGCTCCTTTACTCAAATACTTATTTGCCGGATCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

271

Amino Acids

30.61

Weight (kDa)

5.3

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25480
fragaria_vesca	FvH4_2g29650
malus_domestica	MD08G1143700.v1.1 MD08G1144900.v1.1 MD15G1120500.v1.1 MD15G1439700.v1.1
prunus_persica	Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1
pyrus_communis	pycom08g12220 pycom15g10870
rosa_chinensis	RchiOBHm_Chr1g0355831 RchiOBHm_Chr6g0298621
rosa_laevigata	RLG00000011498
rosa_multiflora	Rmu_sc0004076.1_g000002 Rmu_sc0004500.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169480
rosa_rugosa	Rorug03G0271800 Rorug03G0271800 Rorug03G0271900 Rorug06G0281800
rosa_samantha	Rh2BG320400 Rh2CG300400 Rh2DG337600 Rh4AG109400 Rh4BG194000 Rh4DG193200 Rh6BG400900 Rh6CG406900 Rh6DG393500
rosa_wichuraiana	Rw6G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	811
AcsI	RAATTY	2 cut(s)	82, 338
AfaI	GTAC	4 cut(s)	129, 445, 464, 577
AfiI	CCNNNNNNNGG	3 cut(s)	138, 233, 667
AgsI	TTSAA	5 cut(s)	177, 308, 338, 343, 634
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	3 cut(s)	137, 156, 291
AluBI	AGCT	3 cut(s)	208, 330, 480
AluI	AGCT	3 cut(s)	208, 330, 480
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	29, 248
AlwI	GGATC	1 cut(s)	811
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	140, 224
ApeKI	GCWGC	2 cut(s)	601, 730
ApoI	RAATTY	2 cut(s)	82, 338
Asp700I	GAANNNNTTC	2 cut(s)	330, 699
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	692
AsuHPI	GGTGA	1 cut(s)	635
AsuII	TTCGAA	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	613, 742
BccI	CCATC	1 cut(s)	401
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	3 cut(s)	139, 158, 293
BciVI	GTATCC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	692
BcoDI	GTCTC	2 cut(s)	29, 248
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	3 cut(s)	321, 396, 599
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	602, 731
BlsI	GCNGC	2 cut(s)	603, 732
Bme1390I	CCNGG	4 cut(s)	139, 158, 293, 692
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	225, 583
BmrFI	CCNGG	4 cut(s)	139, 158, 293, 692
BmrI	ACTGGG	1 cut(s)	755
BmsI	GCATC	2 cut(s)	459, 649
BmuI	ACTGGG	1 cut(s)	755
Bpu14I	TTCGAA	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	692
Bsa29I	ATCGAT	1 cut(s)	562
BsaJI	CCNNGG	2 cut(s)	504, 662
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 233, 667
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	750
Bse21I	CCTNAGG	1 cut(s)	725
BseBI	CCWGG	3 cut(s)	139, 158, 293
BseCI	ATCGAT	1 cut(s)	562
BseDI	CCNNGG	2 cut(s)	504, 662
BseLI	CCNNNNNNNGG	3 cut(s)	138, 233, 667
BseMII	CTCAG	1 cut(s)	739
BseNI	ACTGG	1 cut(s)	750
BseXI	GCAGC	2 cut(s)	613, 742
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	142, 226
BshVI	ATCGAT	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	447, 692, 801
BslI	CCNNNNNNNGG	3 cut(s)	138, 233, 667
BsmAI	GTCTC	2 cut(s)	29, 248
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	2 cut(s)	142, 226
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	457, 803
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	2 cut(s)	142, 226
BspCNI	CTCAG	1 cut(s)	738
BspDI	ATCGAT	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	809
BspLI	GGNNCC	2 cut(s)	225, 583
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	1 cut(s)	811
BspT104I	TTCGAA	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	750
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	504, 662
BssMI	GATC	2 cut(s)	457, 803
BssT1I	CCWWGG	2 cut(s)	504, 662
Bst2UI	CCWGG	3 cut(s)	139, 158, 293
Bst4CI	ACNGT	3 cut(s)	120, 259, 755
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstBI	TTCGAA	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	725
BstDSI	CCRYGG	1 cut(s)	504
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	460, 806
BstMAI	GTCTC	2 cut(s)	29, 248
BstMBI	GATC	2 cut(s)	457, 803
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 773
BstNI	CCWGG	3 cut(s)	139, 158, 293
BstSCI	CCNGG	4 cut(s)	137, 156, 291, 690
BstSFI	CTRYAG	3 cut(s)	321, 396, 599
BstV1I	GCAGC	2 cut(s)	613, 742
BstXI	CCANNNNNNTGG	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	562
Bsu36I	CCTNAGG	1 cut(s)	725
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	142, 226
BsuTUI	ATCGAT	1 cut(s)	562
BtgI	CCRYGG	1 cut(s)	504
BtsI	GCAGTG	2 cut(s)	358, 774
BtsIMutI	CAGTG	3 cut(s)	264, 358, 774
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	809
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	562
Csp6I	GTAC	4 cut(s)	128, 444, 463, 576
CviAII	CATG	2 cut(s)	505, 810
CviQI	GTAC	4 cut(s)	128, 444, 463, 576
DdeI	CTNAG	1 cut(s)	725
DpnI	GATC	2 cut(s)	459, 805
DpnII	GATC	2 cut(s)	457, 803
Eco130I	CCWWGG	2 cut(s)	504, 662
Eco81I	CCTNAGG	1 cut(s)	725
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	3 cut(s)	137, 156, 291
EcoT14I	CCWWGG	2 cut(s)	504, 662
EcoT22I	ATGCAT	1 cut(s)	742
ErhI	CCWWGG	2 cut(s)	504, 662
FaeI	CATG	2 cut(s)	508, 813
FatI	CATG	2 cut(s)	504, 809
Fnu4HI	GCNGC	2 cut(s)	602, 731
Fsp4HI	GCNGC	2 cut(s)	602, 731
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	2 cut(s)	602, 731
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	142, 226
HapII	CCGG	3 cut(s)	447, 692, 801
Hin1II	CATG	2 cut(s)	508, 813
HindIII	AAGCTT	2 cut(s)	328, 478
HinfI	GANTC	4 cut(s)	109, 308, 365, 524
HpaII	CCGG	3 cut(s)	447, 692, 801
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	128, 269, 379
Hpy188I	TCNGA	2 cut(s)	43, 364
Hpy188III	TCNNGA	4 cut(s)	335, 343, 521, 810
Hpy8I	GTNNAC	3 cut(s)	128, 269, 379
HpyAV	CCTTC	5 cut(s)	183, 422, 565, 628, 656
HpyCH4III	ACNGT	3 cut(s)	120, 259, 755
HpyCH4V	TGCA	5 cut(s)	94, 351, 601, 682, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 773
HpyF3I	CTNAG	1 cut(s)	725
Hsp92II	CATG	2 cut(s)	508, 813
Kzo9I	GATC	2 cut(s)	457, 803
LmnI	GCTCC	3 cut(s)	587, 637, 781
Lsp1109I	GCAGC	2 cut(s)	613, 742
LweI	GCATC	2 cut(s)	459, 649
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	4 cut(s)	114, 300, 353, 554
MalI	GATC	2 cut(s)	459, 805
MboI	GATC	2 cut(s)	457, 803
MboII	GAAGA	4 cut(s)	87, 203, 618, 707
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	5 cut(s)	82, 338, 346, 370, 676
MlyI	GAGTC	2 cut(s)	118, 374
MnlI	CCTC	4 cut(s)	159, 483, 661, 734
Mph1103I	ATGCAT	1 cut(s)	742
MroXI	GAANNNNTTC	2 cut(s)	330, 699
MseI	TTAA	1 cut(s)	476
MspI	CCGG	3 cut(s)	447, 692, 801
MspR9I	CCNGG	4 cut(s)	139, 158, 293, 692
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	3 cut(s)	139, 158, 293
MwoI	GCNNNNNNNGC	2 cut(s)	153, 773
NciI	CCSGG	1 cut(s)	692
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	2 cut(s)	457, 803
NlaIII	CATG	2 cut(s)	508, 813
NlaIV	GGNNCC	2 cut(s)	225, 583
NmuCI	GTSAC	1 cut(s)	353
NsiI	ATGCAT	1 cut(s)	742
NspV	TTCGAA	1 cut(s)	527
PagI	TCATGA	1 cut(s)	809
PctI	GAATGC	1 cut(s)	682
PdmI	GAANNNNTTC	2 cut(s)	330, 699
PfeI	GAWTC	2 cut(s)	308, 524
PfoI	TCCNGGA	1 cut(s)	690
PkrI	GCNGC	2 cut(s)	603, 732
PleI	GAGTC	2 cut(s)	117, 373
PpsI	GAGTC	2 cut(s)	117, 373
Psp6I	CCWGG	3 cut(s)	137, 156, 291
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	3 cut(s)	137, 156, 291
PspN4I	GGNNCC	2 cut(s)	225, 583
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	404
RsaI	GTAC	4 cut(s)	129, 445, 464, 577
RsaNI	GTAC	4 cut(s)	128, 444, 463, 576
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	2 cut(s)	602, 731
Sau3AI	GATC	2 cut(s)	457, 803
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	2 cut(s)	118, 374
ScrFI	CCNGG	4 cut(s)	139, 158, 293, 692
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	8 cut(s)	175, 182, 210, 332, 482, 494, 648, 672
SfaNI	GCATC	2 cut(s)	459, 649
SfcI	CTRYAG	3 cut(s)	321, 396, 599
SfuI	TTCGAA	1 cut(s)	527
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	5 cut(s)	82, 338, 346, 370, 676
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	137, 156, 291, 690
StyI	CCWWGG	2 cut(s)	504, 662
TaaI	ACNGT	3 cut(s)	120, 259, 755
TaqI	TCGA	4 cut(s)	198, 527, 562, 649
TasI	AATT	5 cut(s)	82, 338, 346, 370, 676
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	2 cut(s)	308, 524
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	3 cut(s)	264, 358, 774
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	601, 730
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	91, 291, 441, 618
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	3 cut(s)	264, 358, 774
XagI	CCTNNNNNAGG	1 cut(s)	136
XapI	RAATTY	2 cut(s)	82, 338
XmnI	GAANNNNTTC	2 cut(s)	330, 699
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.