Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003990

Physical Location & Seq

Genomic Coordinates Reverse (-)

37949615 .. 37951958

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGACAAGGTTCACAACTAGAGCAGGAGAGAGACCTGGAGGGTCTCTTTGCTTTGGAGAAATGGAGGACACGATGCCCATTTGCAAGACTGATACTCTAACTCCGCTGGTCTCGATAGATATGGAGCGAATGTATGGCTTCTGTCTCCTCCTTGCCAACCCTATACTAGACAAGACATCTGATACACATGGAAAAATGATAGAGATATTGAGAAGAAGTGATTTTGTTACACAGGAGTTCATATTGAGTCCCTTGCAGTTTGGTGTACCAATAGAAAGCTTTCTTGAATTCAAGAATTGCCGTGATCAGCCGAACTTTGTGGACAACACCACTGTTTATACAGATACCATTGGAGTATTGGAGAAAGATGAAGAGAATGGGTGTTGTACTAGCACCTTGGATCAGTACTCTGTTCCCTCAAGCTTGATAGAGAGATGGGGAAGTGCCATGGATATTGTCTACCCGGATTCAAAGCGATGCTGTTGTTTTACAAAAAGTTATTATCGATATGTGAAGGGTACTGGCTCCCTTTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

179

Amino Acids

20.23

Weight (kDa)

4.77

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25480
fragaria_vesca	FvH4_2g29650
malus_domestica	MD08G1143700.v1.1 MD08G1144900.v1.1 MD15G1120500.v1.1 MD15G1439700.v1.1
prunus_persica	Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1
pyrus_communis	pycom08g12220 pycom15g10870
rosa_chinensis	RchiOBHm_Chr1g0355831 RchiOBHm_Chr6g0298621
rosa_laevigata	RLG00000011498
rosa_multiflora	Rmu_sc0004076.1_g000002 Rmu_sc0004500.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169480
rosa_rugosa	Rorug03G0271800 Rorug03G0271800 Rorug03G0271900 Rorug06G0281800
rosa_samantha	Rh2BG320400 Rh2CG300400 Rh2DG337600 Rh4AG109400 Rh4BG194000 Rh4DG193200 Rh6BG400900 Rh6CG406900 Rh6DG393500
rosa_wichuraiana	Rw6G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	4 cut(s)	267, 388, 407, 520
AgsI	TTSAA	3 cut(s)	287, 292, 471
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	279, 423
AluI	AGCT	2 cut(s)	279, 423
Alw26I	GTCTC	4 cut(s)	25, 48, 115, 149
AlwI	GGATC	1 cut(s)	408
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	279
AsuC2I	CCSGG	1 cut(s)	464
BccI	CCATC	1 cut(s)	429
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	4 cut(s)	25, 48, 115, 149
BfaI	CTAG	3 cut(s)	18, 167, 390
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	36, 464
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	2 cut(s)	36, 464
BmsI	GCATC	2 cut(s)	63, 467
BpmI	CTGGAG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	505
BsaI	GGTCTC	3 cut(s)	25, 48, 115
BsaJI	CCNNGG	2 cut(s)	396, 447
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 116, 146
Bse1I	ACTGG	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	396, 447
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	234
BsmAI	GTCTC	4 cut(s)	25, 48, 115, 149
BsmFI	GGGAC	1 cut(s)	234
Bso31I	GGTCTC	3 cut(s)	25, 48, 115
Bsp143I	GATC	2 cut(s)	304, 400
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	1 cut(s)	104
BspDI	ATCGAT	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	408
BspTNI	GGTCTC	3 cut(s)	25, 48, 115
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	396, 447
BssMI	GATC	2 cut(s)	304, 400
BssT1I	CCWWGG	2 cut(s)	396, 447
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	447
BstKTI	GATC	2 cut(s)	307, 403
BstMAI	GTCTC	4 cut(s)	25, 48, 115, 149
BstMBI	GATC	2 cut(s)	304, 400
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	34, 462
Bsu15I	ATCGAT	1 cut(s)	505
BsuTUI	ATCGAT	1 cut(s)	505
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	505
Csp6I	GTAC	4 cut(s)	266, 387, 406, 519
CviAII	CATG	3 cut(s)	188, 448, 537
CviJI	RGCY	5 cut(s)	138, 279, 310, 423, 525
CviKI_1	RGCY	5 cut(s)	138, 279, 310, 423, 525
CviQI	GTAC	4 cut(s)	266, 387, 406, 519
DpnI	GATC	2 cut(s)	306, 402
DpnII	GATC	2 cut(s)	304, 400
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	396, 447
Eco31I	GGTCTC	3 cut(s)	25, 48, 115
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	396, 447
ErhI	CCWWGG	2 cut(s)	396, 447
FaeI	CATG	3 cut(s)	191, 451, 540
FaiI	YATR	9 cut(s)	122, 135, 164, 189, 242, 339, 449, 510, 538
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	3 cut(s)	187, 447, 536
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	459
FspBI	CTAG	3 cut(s)	18, 167, 390
GsuI	CTGGAG	1 cut(s)	57
HapII	CCGG	1 cut(s)	464
Hin1II	CATG	3 cut(s)	191, 451, 540
HindIII	AAGCTT	2 cut(s)	277, 421
HinfI	GANTC	2 cut(s)	247, 467
HpaII	CCGG	1 cut(s)	464
Hpy166II	GTNNAC	4 cut(s)	12, 266, 322, 460
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	3 cut(s)	112, 284, 292
Hpy8I	GTNNAC	4 cut(s)	12, 266, 322, 460
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	2 cut(s)	84, 256
Hsp92II	CATG	3 cut(s)	191, 451, 540
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	304, 400
LmnI	GCTCC	2 cut(s)	124, 530
LpnPI	CCDG	7 cut(s)	9, 21, 48, 92, 218, 477, 507
LweI	GCATC	2 cut(s)	63, 467
MaeI	CTAG	3 cut(s)	18, 167, 390
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	306, 402
MboI	GATC	2 cut(s)	304, 400
MboII	GAAGA	2 cut(s)	225, 383
MluCI	AATT	2 cut(s)	287, 295
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	4 cut(s)	32, 58, 158, 427
MroXI	GAANNNNTTC	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	2 cut(s)	36, 464
MvaI	CCWGG	1 cut(s)	36
NciI	CCSGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	2 cut(s)	304, 400
NlaIII	CATG	3 cut(s)	191, 451, 540
NlaIV	GGNNCC	1 cut(s)	526
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	526
RsaI	GTAC	4 cut(s)	267, 388, 407, 520
RsaNI	GTAC	4 cut(s)	266, 387, 406, 519
Sau3AI	GATC	2 cut(s)	304, 400
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	36, 464
SetI	ASST	5 cut(s)	11, 37, 281, 398, 425
SfaNI	GCATC	2 cut(s)	63, 467
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	2 cut(s)	287, 295
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	3 cut(s)	18, 167, 390
StyD4I	CCNGG	2 cut(s)	34, 462
StyI	CCWWGG	2 cut(s)	396, 447
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	113, 505
TasI	AATT	2 cut(s)	287, 295
TatI	WGTACW	2 cut(s)	386, 405
TfiI	GAWTC	1 cut(s)	467
TscAI	CASTG	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	229, 384
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	3 cut(s)	18, 167, 390
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.