Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25480 |
| fragaria_vesca | FvH4_2g29650 |
| malus_domestica | MD08G1143700.v1.1 MD08G1144900.v1.1 MD15G1120500.v1.1 MD15G1439700.v1.1 |
| prunus_persica | Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 |
| pyrus_communis | pycom08g12220 pycom15g10870 |
| rosa_chinensis | RchiOBHm_Chr1g0355831 RchiOBHm_Chr6g0298621 |
| rosa_laevigata | RLG00000011498 |
| rosa_multiflora | Rmu_sc0004076.1_g000002 Rmu_sc0004500.1_g000017 |
| rosa_roxburghii | Rroxscaffold_7G00169480 |
| rosa_rugosa | Rorug03G0271800 Rorug03G0271800 Rorug03G0271900 Rorug06G0281800 |
| rosa_samantha | Rh2BG320400 Rh2CG300400 Rh2DG337600 Rh4AG109400 Rh4BG194000 Rh4DG193200 Rh6BG400900 Rh6CG406900 Rh6DG393500 |
| rosa_wichuraiana | Rw6G034370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1216, 2093 |
| AccB1I | GGYRCC | 1 cut(s) | 1300 |
| AccI | GTMKAC | 2 cut(s) | 257, 861 |
| AciI | CCGC | 9 cut(s) | 48, 83, 332, 632, 710, 1323, 1442, 2208, 2242 |
| AclI | AACGTT | 1 cut(s) | 99 |
| AclWI | GGATC | 4 cut(s) | 701, 810, 1576, 1610 |
| AcoI | YGGCCR | 1 cut(s) | 1345 |
| AcsI | RAATTY | 5 cut(s) | 689, 1185, 1205, 1657, 1963 |
| AcuI | CTGAAG | 3 cut(s) | 998, 1290, 1794 |
| AfaI | GTAC | 5 cut(s) | 480, 790, 809, 922, 1769 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 173, 584, 585, 1012, 1297, 1420, 2133, 2283 |
| AflII | CTTAAG | 1 cut(s) | 2278 |
| AjnI | CCWGG | 3 cut(s) | 488, 507, 1551 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 360, 392 |
| Alw21I | GWGCWC | 2 cut(s) | 1821, 2000 |
| Alw26I | GTCTC | 6 cut(s) | 243, 275, 380, 1131, 1380, 1741 |
| AlwI | GGATC | 4 cut(s) | 701, 810, 1576, 1610 |
| Ama87I | CYCGRG | 3 cut(s) | 35, 294, 1882 |
| AoxI | GGCC | 4 cut(s) | 491, 1345, 1430, 2356 |
| ApeKI | GCWGC | 4 cut(s) | 19, 197, 946, 2210 |
| ApoI | RAATTY | 5 cut(s) | 689, 1185, 1205, 1657, 1963 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 681, 1044 |
| AspS9I | GGNCC | 4 cut(s) | 31, 567, 1839, 2274 |
| AsuC2I | CCSGG | 2 cut(s) | 866, 1786 |
| AsuHPI | GGTGA | 3 cut(s) | 299, 1403, 1910 |
| AsuII | TTCGAA | 1 cut(s) | 2333 |
| AvaI | CYCGRG | 3 cut(s) | 35, 294, 1882 |
| AvaII | GGWCC | 4 cut(s) | 31, 567, 1839, 2274 |
| BalI | TGGCCA | 1 cut(s) | 1347 |
| BanI | GGYRCC | 1 cut(s) | 1300 |
| BanII | GRGCYC | 1 cut(s) | 2000 |
| Bbv12I | GWGCWC | 2 cut(s) | 1821, 2000 |
| BbvI | GCAGC | 4 cut(s) | 31, 209, 958, 2222 |
| BccI | CCATC | 5 cut(s) | 831, 1507, 1852, 2248, 2344 |
| BceAI | ACGGC | 1 cut(s) | 1660 |
| BciT130I | CCWGG | 3 cut(s) | 490, 509, 1553 |
| BcnI | CCSGG | 2 cut(s) | 866, 1786 |
| BcoDI | GTCTC | 6 cut(s) | 243, 275, 380, 1131, 1380, 1741 |
| BfmI | CTRYAG | 3 cut(s) | 43, 195, 1210 |
| BfrI | CTTAAG | 1 cut(s) | 2278 |
| BfuAI | ACCTGC | 2 cut(s) | 1216, 2093 |
| BglII | AGATCT | 2 cut(s) | 1173, 2164 |
| BisI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 2208, 2211 |
| BlpI | GCTNAGC | 1 cut(s) | 1286 |
| BlsI | GCNGC | 6 cut(s) | 21, 199, 633, 948, 2209, 2212 |
| BmcAI | AGTACT | 1 cut(s) | 809 |
| Bme1390I | CCNGG | 5 cut(s) | 490, 509, 866, 1553, 1786 |
| Bme18I | GGWCC | 4 cut(s) | 31, 567, 1839, 2274 |
| BmeT110I | CYCGRG | 3 cut(s) | 35, 294, 1882 |
| BmgT120I | GGNCC | 4 cut(s) | 31, 567, 1839, 2274 |
| BmiI | GGNNCC | 6 cut(s) | 32, 569, 928, 1302, 1841, 2275 |
| BmrFI | CCNGG | 5 cut(s) | 490, 509, 866, 1553, 1786 |
| BmrI | ACTGGG | 1 cut(s) | 951 |
| BmsI | GCATC | 6 cut(s) | 280, 869, 977, 1116, 2014, 2128 |
| BmuI | ACTGGG | 1 cut(s) | 951 |
| BpmI | CTGGAG | 1 cut(s) | 296 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1518 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1286 |
| Bpu14I | TTCGAA | 1 cut(s) | 2333 |
| BpuEI | CTTGAG | 3 cut(s) | 341, 805, 1123 |
| BpuMI | CCSGG | 2 cut(s) | 866, 1786 |
| Bsa29I | ATCGAT | 1 cut(s) | 907 |
| BsaBI | GATNNNNATC | 2 cut(s) | 141, 1178 |
| BsaI | GGTCTC | 2 cut(s) | 275, 1380 |
| BsaJI | CCNNGG | 6 cut(s) | 23, 798, 849, 1575, 1784, 2359 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 210, 240, 255, 285, 1796, 1826 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 173, 584, 585, 1012, 1297, 1420, 2133, 2283 |
| Bse1I | ACTGG | 3 cut(s) | 928, 946, 1445 |
| Bse3DI | GCAATG | 2 cut(s) | 1085, 1348 |
| Bse8I | GATNNNNATC | 2 cut(s) | 141, 1178 |
| BseBI | CCWGG | 3 cut(s) | 490, 509, 1553 |
| BseCI | ATCGAT | 1 cut(s) | 907 |
| BseDI | CCNNGG | 6 cut(s) | 23, 798, 849, 1575, 1784, 2359 |
| BseGI | GGATG | 2 cut(s) | 1571, 2143 |
| BseJI | GATNNNNATC | 2 cut(s) | 141, 1178 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 173, 584, 585, 1012, 1297, 1420, 2133, 2283 |
| BseMI | GCAATG | 2 cut(s) | 1085, 1348 |
| BseMII | CTCAG | 3 cut(s) | 6, 1125, 1147 |
| BseNI | ACTGG | 3 cut(s) | 928, 946, 1445 |
| BseRI | GAGGAG | 2 cut(s) | 231, 1592 |
| BseXI | GCAGC | 4 cut(s) | 31, 209, 958, 2222 |
| BseYI | CCCAGC | 2 cut(s) | 1090, 1894 |
| BsgI | GTGCAG | 2 cut(s) | 1476, 2181 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1203 |
| BshFI | GGCC | 4 cut(s) | 493, 1347, 1432, 2358 |
| BshNI | GGYRCC | 1 cut(s) | 1300 |
| BshVI | ATCGAT | 1 cut(s) | 907 |
| BsiEI | CGRYCG | 1 cut(s) | 1203 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1821, 2000 |
| BsiHKCI | CYCGRG | 3 cut(s) | 35, 294, 1882 |
| BsiSI | CCGG | 4 cut(s) | 866, 1037, 1786, 2245 |
| BslFI | GGGAC | 6 cut(s) | 150, 447, 553, 1283, 1397, 1825 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 173, 584, 585, 1012, 1297, 1420, 2133, 2283 |
| BsmAI | GTCTC | 6 cut(s) | 243, 275, 380, 1131, 1380, 1741 |
| BsmFI | GGGAC | 6 cut(s) | 150, 447, 553, 1283, 1397, 1825 |
| BsmI | GAATGC | 4 cut(s) | 97, 110, 1027, 1593 |
| BsnI | GGCC | 4 cut(s) | 493, 1347, 1432, 2358 |
| Bso31I | GGTCTC | 2 cut(s) | 275, 1380 |
| BsoBI | CYCGRG | 3 cut(s) | 35, 294, 1882 |
| Bsp119I | TTCGAA | 1 cut(s) | 2333 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1821, 2000 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1286 |
| Bsp19I | CCATGG | 2 cut(s) | 23, 849 |
| BspACI | CCGC | 9 cut(s) | 48, 83, 332, 632, 710, 1323, 1442, 2208, 2242 |
| BspANI | GGCC | 4 cut(s) | 493, 1347, 1432, 2358 |
| BspCNI | CTCAG | 3 cut(s) | 7, 1124, 1146 |
| BspDI | ATCGAT | 1 cut(s) | 907 |
| BspLI | GGNNCC | 6 cut(s) | 32, 569, 928, 1302, 1841, 2275 |
| BspMAI | CTGCAG | 1 cut(s) | 199 |
| BspMI | ACCTGC | 2 cut(s) | 1216, 2093 |
| BspPI | GGATC | 4 cut(s) | 701, 810, 1576, 1610 |
| BspT104I | TTCGAA | 1 cut(s) | 2333 |
| BspT107I | GGYRCC | 1 cut(s) | 1300 |
| BspTI | CTTAAG | 1 cut(s) | 2278 |
| BspTNI | GGTCTC | 2 cut(s) | 275, 1380 |
| BsrDI | GCAATG | 2 cut(s) | 1085, 1348 |
| BsrI | ACTGG | 3 cut(s) | 928, 946, 1445 |
| BssECI | CCNNGG | 6 cut(s) | 23, 798, 849, 1575, 1784, 2359 |
| BssNAI | GTATAC | 1 cut(s) | 258 |
| BssT1I | CCWWGG | 4 cut(s) | 23, 798, 849, 2359 |
| Bst1107I | GTATAC | 1 cut(s) | 258 |
| Bst2UI | CCWGG | 3 cut(s) | 490, 509, 1553 |
| Bst4CI | ACNGT | 7 cut(s) | 164, 255, 525, 736, 1080, 1358, 1463 |
| Bst6I | CTCTTC | 1 cut(s) | 768 |
| BstAFI | CTTAAG | 1 cut(s) | 2278 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1033 |
| BstBI | TTCGAA | 1 cut(s) | 2333 |
| BstC8I | GCNNGC | 3 cut(s) | 2029, 2235, 2265 |
| BstDEI | CTNAG | 7 cut(s) | 15, 992, 1070, 1111, 1133, 1286, 1518 |
| BstDSI | CCRYGG | 2 cut(s) | 23, 849 |
| BstF5I | GGATG | 2 cut(s) | 1571, 2143 |
| BstMAI | GTCTC | 6 cut(s) | 243, 275, 380, 1131, 1380, 1741 |
| BstMCI | CGRYCG | 1 cut(s) | 1203 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 340, 504, 1033 |
| BstNI | CCWGG | 3 cut(s) | 490, 509, 1553 |
| BstNSI | RCATGY | 3 cut(s) | 2031, 2237, 2267 |
| BstSCI | CCNGG | 5 cut(s) | 488, 507, 864, 1551, 1784 |
| BstSFI | CTRYAG | 3 cut(s) | 43, 195, 1210 |
| BstV1I | GCAGC | 4 cut(s) | 31, 209, 958, 2222 |
| BstX2I | RGATCY | 2 cut(s) | 1173, 2164 |
| BstYI | RGATCY | 2 cut(s) | 1173, 2164 |
| BstZ17I | GTATAC | 1 cut(s) | 258 |
| Bsu15I | ATCGAT | 1 cut(s) | 907 |
| BsuRI | GGCC | 4 cut(s) | 493, 1347, 1432, 2358 |
| BsuTUI | ATCGAT | 1 cut(s) | 907 |
| BtgI | CCRYGG | 2 cut(s) | 23, 849 |
| BtgZI | GCGATG | 2 cut(s) | 892, 1491 |
| BtsCI | GGATG | 2 cut(s) | 1571, 2143 |
| BtsI | GCAGTG | 3 cut(s) | 126, 1325, 1850 |
| BtsIMutI | CAGTG | 7 cut(s) | 126, 732, 974, 1119, 1325, 1770, 1850 |
| BveI | ACCTGC | 2 cut(s) | 1216, 2093 |
| Cac8I | GCNNGC | 3 cut(s) | 2029, 2235, 2265 |
| Cfr13I | GGNCC | 4 cut(s) | 31, 567, 1839, 2274 |
| ClaI | ATCGAT | 1 cut(s) | 907 |
| CseI | GACGC | 1 cut(s) | 1601 |
| Csp6I | GTAC | 5 cut(s) | 479, 789, 808, 921, 1768 |
| CviQI | GTAC | 5 cut(s) | 479, 789, 808, 921, 1768 |
| DdeI | CTNAG | 7 cut(s) | 15, 992, 1070, 1111, 1133, 1286, 1518 |
| EaeI | YGGCCR | 1 cut(s) | 1345 |
| Eam1104I | CTCTTC | 1 cut(s) | 768 |
| EarI | CTCTTC | 1 cut(s) | 768 |
| EciI | GGCGGA | 2 cut(s) | 699, 1431 |
| Ecl136II | GAGCTC | 1 cut(s) | 1998 |
| Eco130I | CCWWGG | 4 cut(s) | 23, 798, 849, 2359 |
| Eco147I | AGGCCT | 1 cut(s) | 1432 |
| Eco24I | GRGCYC | 1 cut(s) | 2000 |
| Eco31I | GGTCTC | 2 cut(s) | 275, 1380 |
| Eco47I | GGWCC | 4 cut(s) | 31, 567, 1839, 2274 |
| Eco53kI | GAGCTC | 1 cut(s) | 1998 |
| Eco57I | CTGAAG | 3 cut(s) | 998, 1290, 1794 |
| Eco88I | CYCGRG | 3 cut(s) | 35, 294, 1882 |
| EcoICRI | GAGCTC | 1 cut(s) | 1998 |
| EcoO109I | RGGNCCY | 3 cut(s) | 31, 1839, 2274 |
| EcoRI | GAATTC | 2 cut(s) | 689, 1205 |
| EcoRII | CCWGG | 3 cut(s) | 488, 507, 1551 |
| EcoT14I | CCWWGG | 4 cut(s) | 23, 798, 849, 2359 |
| EcoT22I | ATGCAT | 3 cut(s) | 1087, 2029, 2265 |
| EcoT38I | GRGCYC | 1 cut(s) | 2000 |
| ErhI | CCWWGG | 4 cut(s) | 23, 798, 849, 2359 |
| FaqI | GGGAC | 6 cut(s) | 150, 447, 553, 1283, 1397, 1825 |
| FauI | CCCGC | 1 cut(s) | 76 |
| FblI | GTMKAC | 2 cut(s) | 257, 861 |
| Fnu4HI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 2208, 2211 |
| FokI | GGATG | 2 cut(s) | 1558, 2150 |
| FriOI | GRGCYC | 1 cut(s) | 2000 |
| Fsp4HI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 2208, 2211 |
| GluI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 2208, 2211 |
| GsaI | CCCAGC | 2 cut(s) | 1094, 1898 |
| GsuI | CTGGAG | 1 cut(s) | 296 |
| HaeIII | GGCC | 4 cut(s) | 493, 1347, 1432, 2358 |
| HapII | CCGG | 4 cut(s) | 866, 1037, 1786, 2245 |
| HgaI | GACGC | 1 cut(s) | 1601 |
| HincII | GTYRAC | 2 cut(s) | 528, 542 |
| HindII | GTYRAC | 2 cut(s) | 528, 542 |
| HindIII | AAGCTT | 2 cut(s) | 679, 823 |
| HpaII | CCGG | 4 cut(s) | 866, 1037, 1786, 2245 |
| HphI | GGTGA | 3 cut(s) | 299, 1403, 1910 |
| Hpy166II | GTNNAC | 8 cut(s) | 258, 479, 528, 542, 620, 724, 862, 1770 |
| Hpy188I | TCNGA | 9 cut(s) | 16, 158, 186, 394, 1136, 1576, 2002, 2193, 2315 |
| Hpy8I | GTNNAC | 8 cut(s) | 258, 479, 528, 542, 620, 724, 862, 1770 |
| HpyAV | CCTTC | 9 cut(s) | 73, 910, 973, 1258, 1314, 1382, 1522, 2195, 2348 |
| HpyCH4III | ACNGT | 7 cut(s) | 164, 255, 525, 736, 1080, 1358, 1463 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 1383, 1696 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 340, 504, 1033 |
| HpyF3I | CTNAG | 7 cut(s) | 15, 992, 1070, 1111, 1133, 1286, 1518 |
| HpySE526I | ACGT | 3 cut(s) | 99, 1383, 1696 |
| LmnI | GCTCC | 5 cut(s) | 218, 639, 932, 1310, 1995 |
| Lsp1109I | GCAGC | 4 cut(s) | 31, 209, 958, 2222 |
| LweI | GCATC | 6 cut(s) | 280, 869, 977, 1116, 2014, 2128 |
| MaeII | ACGT | 3 cut(s) | 99, 1383, 1696 |
| MaeIII | GTNAC | 4 cut(s) | 176, 439, 1333, 2066 |
| MboII | GAAGA | 8 cut(s) | 438, 785, 963, 1522, 1801, 1839, 2126, 2306 |
| MfeI | CAATTG | 1 cut(s) | 1616 |
| MflI | RGATCY | 2 cut(s) | 1173, 2164 |
| MhlI | GDGCHC | 2 cut(s) | 1821, 2000 |
| MlsI | TGGCCA | 1 cut(s) | 1347 |
| MluNI | TGGCCA | 1 cut(s) | 1347 |
| MlyI | GAGTC | 5 cut(s) | 469, 1133, 1419, 2048, 2153 |
| MmeI | TCCRAC | 2 cut(s) | 358, 2345 |
| Mox20I | TGGCCA | 1 cut(s) | 1347 |
| Mph1103I | ATGCAT | 3 cut(s) | 1087, 2029, 2265 |
| MroXI | GAANNNNTTC | 2 cut(s) | 681, 1044 |
| MscI | TGGCCA | 1 cut(s) | 1347 |
| MseI | TTAA | 5 cut(s) | 74, 1661, 1751, 2061, 2279 |
| MslI | CAYNNNNRTG | 3 cut(s) | 594, 1112, 1318 |
| Msp20I | TGGCCA | 1 cut(s) | 1347 |
| MspA1I | CMGCKG | 1 cut(s) | 48 |
| MspCI | CTTAAG | 1 cut(s) | 2278 |
| MspI | CCGG | 4 cut(s) | 866, 1037, 1786, 2245 |
| MspR9I | CCNGG | 5 cut(s) | 490, 509, 866, 1553, 1786 |
| MunI | CAATTG | 1 cut(s) | 1616 |
| Mva1269I | GAATGC | 4 cut(s) | 97, 110, 1027, 1593 |
| MvaI | CCWGG | 3 cut(s) | 490, 509, 1553 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 340, 504, 1033 |
| NciI | CCSGG | 2 cut(s) | 866, 1786 |
| NcoI | CCATGG | 2 cut(s) | 23, 849 |
| NlaIV | GGNNCC | 6 cut(s) | 32, 569, 928, 1302, 1841, 2275 |
| NmuCI | GTSAC | 1 cut(s) | 1333 |
| NsiI | ATGCAT | 3 cut(s) | 1087, 2029, 2265 |
| NspI | RCATGY | 3 cut(s) | 2031, 2237, 2267 |
| NspV | TTCGAA | 1 cut(s) | 2333 |
| PaeI | GCATGC | 3 cut(s) | 2031, 2237, 2267 |
| PaeR7I | CTCGAG | 1 cut(s) | 35 |
| PceI | AGGCCT | 1 cut(s) | 1432 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 120 |
| PctI | GAATGC | 4 cut(s) | 97, 110, 1027, 1593 |
| PdmI | GAANNNNTTC | 2 cut(s) | 681, 1044 |
| PfeI | GAWTC | 7 cut(s) | 316, 659, 869, 1163, 1257, 1724, 2180 |
| PflFI | GACNNNGTC | 2 cut(s) | 162, 267 |
| PkrI | GCNGC | 6 cut(s) | 21, 199, 633, 948, 2209, 2212 |
| Ple19I | CGATCG | 1 cut(s) | 1203 |
| PleI | GAGTC | 5 cut(s) | 468, 1133, 1418, 2047, 2152 |
| PpsI | GAGTC | 5 cut(s) | 468, 1133, 1418, 2047, 2152 |
| PpuMI | RGGWCCY | 3 cut(s) | 31, 1839, 2274 |
| Psp124BI | GAGCTC | 1 cut(s) | 2000 |
| Psp1406I | AACGTT | 1 cut(s) | 99 |
| Psp5II | RGGWCCY | 3 cut(s) | 31, 1839, 2274 |
| Psp6I | CCWGG | 3 cut(s) | 488, 507, 1551 |
| PspFI | CCCAGC | 2 cut(s) | 1090, 1894 |
| PspGI | CCWGG | 3 cut(s) | 488, 507, 1551 |
| PspN4I | GGNNCC | 6 cut(s) | 32, 569, 928, 1302, 1841, 2275 |
| PspPI | GGNCC | 4 cut(s) | 31, 567, 1839, 2274 |
| PspPPI | RGGWCCY | 3 cut(s) | 31, 1839, 2274 |
| PspXI | VCTCGAGB | 1 cut(s) | 35 |
| PstI | CTGCAG | 1 cut(s) | 199 |
| PsuI | RGATCY | 2 cut(s) | 1173, 2164 |
| PsyI | GACNNNGTC | 2 cut(s) | 162, 267 |
| PvuI | CGATCG | 1 cut(s) | 1203 |
| RsaI | GTAC | 5 cut(s) | 480, 790, 809, 922, 1769 |
| RsaNI | GTAC | 5 cut(s) | 479, 789, 808, 921, 1768 |
| RseI | CAYNNNNRTG | 3 cut(s) | 594, 1112, 1318 |
| SacI | GAGCTC | 1 cut(s) | 2000 |
| SaqAI | TTAA | 5 cut(s) | 74, 1661, 1751, 2061, 2279 |
| SatI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 2208, 2211 |
| Sau96I | GGNCC | 4 cut(s) | 31, 567, 1839, 2274 |
| ScaI | AGTACT | 1 cut(s) | 809 |
| SchI | GAGTC | 5 cut(s) | 469, 1133, 1419, 2048, 2153 |
| ScrFI | CCNGG | 5 cut(s) | 490, 509, 866, 1553, 1786 |
| SduI | GDGCHC | 2 cut(s) | 1821, 2000 |
| SfaNI | GCATC | 6 cut(s) | 280, 869, 977, 1116, 2014, 2128 |
| SfcI | CTRYAG | 3 cut(s) | 43, 195, 1210 |
| Sfr274I | CTCGAG | 1 cut(s) | 35 |
| SfuI | TTCGAA | 1 cut(s) | 2333 |
| SinI | GGWCC | 4 cut(s) | 31, 567, 1839, 2274 |
| SlaI | CTCGAG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 594, 1112, 1318 |
| SmlI | CTYRAG | 5 cut(s) | 35, 320, 820, 1102, 2278 |
| SmoI | CTYRAG | 5 cut(s) | 35, 320, 820, 1102, 2278 |
| SphI | GCATGC | 3 cut(s) | 2031, 2237, 2267 |
| SseBI | AGGCCT | 1 cut(s) | 1432 |
| SsiI | CCGC | 9 cut(s) | 48, 83, 332, 632, 710, 1323, 1442, 2208, 2242 |
| SspI | AATATT | 1 cut(s) | 1691 |
| SstI | GAGCTC | 1 cut(s) | 2000 |
| StuI | AGGCCT | 1 cut(s) | 1432 |
| StyD4I | CCNGG | 5 cut(s) | 488, 507, 864, 1551, 1784 |
| StyI | CCWWGG | 4 cut(s) | 23, 798, 849, 2359 |
| TaaI | ACNGT | 7 cut(s) | 164, 255, 525, 736, 1080, 1358, 1463 |
| TaiI | ACGT | 3 cut(s) | 102, 1386, 1699 |
| TaqI | TCGA | 8 cut(s) | 36, 114, 207, 907, 1182, 1203, 1939, 2333 |
| TatI | WGTACW | 2 cut(s) | 788, 807 |
| TauI | GCSGC | 2 cut(s) | 634, 2210 |
| TfiI | GAWTC | 7 cut(s) | 316, 659, 869, 1163, 1257, 1724, 2180 |
| Tru1I | TTAA | 5 cut(s) | 74, 1661, 1751, 2061, 2279 |
| Tru9I | TTAA | 5 cut(s) | 74, 1661, 1751, 2061, 2279 |
| TscAI | CASTG | 7 cut(s) | 133, 739, 981, 1119, 1325, 1777, 1857 |
| TseFI | GTSAC | 1 cut(s) | 1333 |
| TseI | GCWGC | 4 cut(s) | 19, 197, 946, 2210 |
| Tsp45I | GTSAC | 1 cut(s) | 1333 |
| TspDTI | ATGAA | 9 cut(s) | 92, 294, 442, 524, 786, 1554, 1701, 1971, 2355 |
| TspGWI | ACGGA | 1 cut(s) | 1755 |
| TspRI | CASTG | 7 cut(s) | 133, 739, 981, 1119, 1325, 1777, 1857 |
| Tth111I | GACNNNGTC | 2 cut(s) | 162, 267 |
| Vha464I | CTTAAG | 1 cut(s) | 2278 |
| VpaK11BI | GGWCC | 4 cut(s) | 31, 567, 1839, 2274 |
| XapI | RAATTY | 5 cut(s) | 689, 1185, 1205, 1657, 1963 |
| XbaI | TCTAGA | 1 cut(s) | 1702 |
| XceI | RCATGY | 3 cut(s) | 2031, 2237, 2267 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 281, 757 |
| XhoI | CTCGAG | 1 cut(s) | 35 |
| XmiI | GTMKAC | 2 cut(s) | 257, 861 |
| XmnI | GAANNNNTTC | 2 cut(s) | 681, 1044 |
| ZrmI | AGTACT | 1 cut(s) | 809 |
| Zsp2I | ATGCAT | 3 cut(s) | 1087, 2029, 2265 |