Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003990

Physical Location & Seq

Genomic Coordinates Reverse (-)

10515461 .. 10517221

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGAACGGTTTAGAGAAGCAGGAACAGGAAGAGCAGCCATGGCGGATCCTCGAGTTCTACAGCGGCATTGGAGGCATGATGTACTCGCTAGTGAGGGCAGGAGTGAACGCCGAAGTTGTGGAAGCGTTCGACATCAACGACACTGCCAACGACGTTTACCAGCACAATTTCGGCCACCGTCCCTATCAGGGTAATATTCAGAGCCTTACTGCTGCTCGATCTCGACTGTTATGGGGGCCAATGCATGGCTTCTTTCTCCTCCTTGCCAACCTTACACTCGACAGGACATCTGATACGCATACAAAAATGATAGAGATATTGGGAAGAACAAATTTTGTTCTGCAGGAGTTCATATGGAGTCCGTTACAGTTTGGTGTACCCTATTCCAGGCCACGCTATTTTTGCCTGGCAAAGAGGAGACCTTCAACCTTTTACAATCAAGTTTTCGATAATCAGCTTCTTCGCTCGCTAGGGCCATTATTTGGGGATGCAAATGCTGATGAGACAGTGTTCTCTGAACTTGATGAACCACAAGAGAGCCGGGATGCGTTACTTGATTCTTGTGAGCCTATAGAAAGCTTTCTTGAATTCAAGAATTGCAGTGACCAGTCGGAGGTCCAATTTTGGGGACACCACTACTTGTTCTACAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

220

Amino Acids

25.39

Weight (kDa)

5.03

Isoelectric Point (pI)

66.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25480
fragaria_vesca	FvH4_2g29650
malus_domestica	MD08G1143700.v1.1 MD08G1144900.v1.1 MD15G1120500.v1.1 MD15G1439700.v1.1
prunus_persica	Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1
pyrus_communis	pycom08g12220 pycom15g10870
rosa_chinensis	RchiOBHm_Chr1g0355831 RchiOBHm_Chr6g0298621
rosa_laevigata	RLG00000011498
rosa_multiflora	Rmu_sc0004076.1_g000002 Rmu_sc0004500.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169480
rosa_rugosa	Rorug03G0271800 Rorug03G0271800 Rorug03G0271900 Rorug06G0281800
rosa_samantha	Rh2BG320400 Rh2CG300400 Rh2DG337600 Rh4AG109400 Rh4BG194000 Rh4DG193200 Rh6BG400900 Rh6CG406900 Rh6DG393500
rosa_wichuraiana	Rw6G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	248, 485
AciI	CCGC	2 cut(s)	46, 66
AclWI	GGATC	2 cut(s)	43, 56
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	334, 590
AfaI	GTAC	2 cut(s)	86, 381
AfiI	CCNNNNNNNGG	6 cut(s)	191, 248, 390, 485, 616, 628
AgsI	TTSAA	3 cut(s)	429, 590, 595
AjnI	CCWGG	2 cut(s)	389, 408
AluBI	AGCT	2 cut(s)	460, 582
AluI	AGCT	2 cut(s)	460, 582
Alw26I	GTCTC	2 cut(s)	415, 500
AlwI	GGATC	2 cut(s)	43, 56
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	4 cut(s)	175, 239, 392, 476
ApeKI	GCWGC	2 cut(s)	37, 215
ApoI	RAATTY	2 cut(s)	334, 590
Asp700I	GAANNNNTTC	1 cut(s)	582
AspS9I	GGNCC	3 cut(s)	239, 476, 619
AsuC2I	CCSGG	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	619
BamHI	GGATCC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	49, 202
BciT130I	CCWGG	2 cut(s)	391, 410
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	415, 500
BfaI	CTAG	2 cut(s)	92, 473
BfmI	CTRYAG	3 cut(s)	61, 344, 573
BisI	GCNGC	3 cut(s)	38, 67, 216
BlsI	GCNGC	3 cut(s)	39, 68, 217
Bme1390I	CCNGG	3 cut(s)	391, 410, 545
Bme18I	GGWCC	1 cut(s)	619
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	3 cut(s)	239, 476, 619
BmiI	GGNNCC	2 cut(s)	50, 240
BmrFI	CCNGG	3 cut(s)	391, 410, 545
BmsI	GCATC	2 cut(s)	481, 538
BpuMI	CCSGG	1 cut(s)	545
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	6 cut(s)	191, 248, 390, 485, 616, 628
Bse1I	ACTGG	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	391, 410
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	496, 553
BseLI	CCNNNNNNNGG	6 cut(s)	191, 248, 390, 485, 616, 628
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	2 cut(s)	251, 433
BseXI	GCAGC	2 cut(s)	49, 202
BshFI	GGCC	4 cut(s)	177, 241, 394, 478
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	544
BslFI	GGGAC	2 cut(s)	168, 645
BslI	CCNNNNNNNGG	6 cut(s)	191, 248, 390, 485, 616, 628
BsmAI	GTCTC	2 cut(s)	415, 500
BsmFI	GGGAC	2 cut(s)	168, 645
BsnI	GGCC	4 cut(s)	177, 241, 394, 478
Bso31I	GGTCTC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	48, 221
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	2 cut(s)	46, 66
BspANI	GGCC	4 cut(s)	177, 241, 394, 478
BspLI	GGNNCC	2 cut(s)	50, 240
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	2 cut(s)	43, 56
BspQI	GCTCTTC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	48, 221
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	391, 410
Bst4CI	ACNGT	5 cut(s)	11, 182, 231, 372, 511
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	470
BstDSI	CCRYGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	496, 553
BstKTI	GATC	2 cut(s)	51, 224
BstMAI	GTCTC	2 cut(s)	415, 500
BstMBI	GATC	2 cut(s)	48, 221
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 75, 405
BstNI	CCWGG	2 cut(s)	391, 410
BstSCI	CCNGG	3 cut(s)	389, 408, 543
BstSFI	CTRYAG	3 cut(s)	61, 344, 573
BstV1I	GCAGC	2 cut(s)	49, 202
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	177, 241, 394, 478
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	496, 553
BtsI	GCAGTG	2 cut(s)	144, 610
BtsIMutI	CAGTG	4 cut(s)	144, 516, 610, 655
Cac8I	GCNNGC	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	239, 476, 619
Csp6I	GTAC	2 cut(s)	85, 380
CviAII	CATG	3 cut(s)	42, 79, 248
CviQI	GTAC	2 cut(s)	85, 380
DpnI	GATC	2 cut(s)	50, 223
DpnII	GATC	2 cut(s)	48, 221
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	619
Eco88I	CYCGRG	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	389, 408
EcoT14I	CCWWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	3 cut(s)	45, 82, 251
FaiI	YATR	8 cut(s)	43, 80, 235, 249, 303, 356, 358, 575
FaqI	GGGAC	2 cut(s)	168, 645
FatI	CATG	3 cut(s)	41, 78, 247
FauNDI	CATATG	1 cut(s)	356
Fnu4HI	GCNGC	3 cut(s)	38, 67, 216
FokI	GGATG	2 cut(s)	503, 560
Fsp4HI	GCNGC	3 cut(s)	38, 67, 216
FspBI	CTAG	2 cut(s)	92, 473
GluI	GCNGC	3 cut(s)	38, 67, 216
HaeIII	GGCC	4 cut(s)	177, 241, 394, 478
HapII	CCGG	1 cut(s)	544
Hin1II	CATG	3 cut(s)	45, 82, 251
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	2 cut(s)	361, 560
HpaII	CCGG	1 cut(s)	544
Hpy166II	GTNNAC	3 cut(s)	109, 160, 380
Hpy188I	TCNGA	4 cut(s)	204, 295, 520, 616
Hpy188III	TCNNGA	3 cut(s)	225, 587, 595
Hpy8I	GTNNAC	3 cut(s)	109, 160, 380
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	5 cut(s)	11, 182, 231, 372, 511
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	247, 346, 494, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 75, 405
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	45, 82, 251
Kzo9I	GATC	2 cut(s)	48, 221
LguI	GCTCTTC	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	49, 202
LweI	GCATC	2 cut(s)	481, 538
MaeI	CTAG	2 cut(s)	92, 473
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	366, 552, 605
MalI	GATC	2 cut(s)	50, 223
MboI	GATC	2 cut(s)	48, 221
MboII	GAAGA	3 cut(s)	44, 339, 455
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	5 cut(s)	169, 334, 590, 598, 623
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	6 cut(s)	62, 68, 90, 272, 411, 610
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	3 cut(s)	391, 410, 545
MvaI	CCWGG	2 cut(s)	391, 410
MwoI	GCNNNNNNNGC	3 cut(s)	43, 75, 405
NciI	CCSGG	1 cut(s)	545
NcoI	CCATGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	356
NdeII	GATC	2 cut(s)	48, 221
NlaIII	CATG	3 cut(s)	45, 82, 251
NlaIV	GGNNCC	2 cut(s)	50, 240
NmuCI	GTSAC	1 cut(s)	605
NsiI	ATGCAT	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	560
PflMI	CCANNNNNTGG	2 cut(s)	248, 485
PkrI	GCNGC	3 cut(s)	39, 68, 217
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	389, 408
PspGI	CCWGG	2 cut(s)	389, 408
PspN4I	GGNNCC	2 cut(s)	50, 240
PspPI	GGNCC	3 cut(s)	239, 476, 619
PspXI	VCTCGAGB	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	2 cut(s)	86, 381
RsaNI	GTAC	2 cut(s)	85, 380
SapI	GCTCTTC	1 cut(s)	27
SatI	GCNGC	3 cut(s)	38, 67, 216
Sau3AI	GATC	2 cut(s)	48, 221
Sau96I	GGNCC	3 cut(s)	239, 476, 619
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	3 cut(s)	391, 410, 545
SetI	ASST	7 cut(s)	159, 276, 427, 434, 462, 584, 621
SfaNI	GCATC	2 cut(s)	481, 538
SfcI	CTRYAG	3 cut(s)	61, 344, 573
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	619
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	169, 334, 590, 598, 623
SsiI	CCGC	2 cut(s)	46, 66
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	92, 473
StyD4I	CCNGG	3 cut(s)	389, 408, 543
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	5 cut(s)	11, 182, 231, 372, 511
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	6 cut(s)	54, 132, 220, 226, 282, 450
TasI	AATT	5 cut(s)	169, 334, 590, 598, 623
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	560
TscAI	CASTG	3 cut(s)	151, 516, 610
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	37, 215
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	2 cut(s)	343, 543
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	3 cut(s)	151, 516, 610
Van91I	CCANNNNNTGG	2 cut(s)	248, 485
VpaK11BI	GGWCC	1 cut(s)	619
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	2 cut(s)	334, 590
XhoI	CTCGAG	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	2 cut(s)	92, 473
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.