Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003990

Physical Location & Seq

Genomic Coordinates Reverse (-)

26811784 .. 26812530

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0271900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTAGAATATTTAGAGCGGTCAAAGTGAAGCGAATACCAATCGTGTGGTTGGAACATATGAATATGTCTCCGGAATATTTAATGGAAGGACTGTTTTCCATAAAGTCTGATGTATATAGTTTTGGTGTTTTACTGCTGGAAATCATTATTGGCAAAAAGAATGCTGGTTATTACCATGAGGAGTATCCTAATTCAAATTTGGTTGGACATGTTTGGGAGTTGTGGAAAGAAGGCAGAGCTGTGGAAGTCATTGATTCATCTATAGGTGAATCTTACCTTGTTAGTGAAGTTATAAGATGCATTCAAATTGCGCTCTTGTGTGTGCAAGAATTTGCAACTGACCGGCCAACCATGTCAGCAGTTGTTTCCATGTTAGGTAATGATGCAGCTCTTCCTTCACCAAGACGACCCGCATTTTTACTAAAGAGAACGAGTCCTAGTGGAGACCCATCCAGCAGCGAAGGAGCTAATTCAGTAAATGATGTCACATGTACAATTATAGAAGCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

171

Amino Acids

19.05

Weight (kDa)

5.65

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	11 - 126	4.1e-09	Protein tyrosine and serine/threonine kinase
DUF3403	PF11883	128 - 171	5.4e-09	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25480
fragaria_vesca	FvH4_2g29650
malus_domestica	MD08G1143700.v1.1 MD08G1144900.v1.1 MD15G1120500.v1.1 MD15G1439700.v1.1
prunus_persica	Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1 Prupe.1G473200_v2.0.a1
pyrus_communis	pycom08g12220 pycom15g10870
rosa_chinensis	RchiOBHm_Chr1g0355831 RchiOBHm_Chr6g0298621
rosa_laevigata	RLG00000011498
rosa_multiflora	Rmu_sc0004076.1_g000002 Rmu_sc0004500.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169480
rosa_rugosa	Rorug03G0271800 Rorug03G0271800 Rorug03G0271900 Rorug06G0281800
rosa_samantha	Rh2BG320400 Rh2CG300400 Rh2DG337600 Rh4AG109400 Rh4BG194000 Rh4DG193200 Rh6BG400900 Rh6CG406900 Rh6DG393500
rosa_wichuraiana	Rw6G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	2 cut(s)	20, 414
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	199, 332
AfaI	GTAC	1 cut(s)	496
AflIII	ACRYGT	2 cut(s)	211, 491
AgsI	TTSAA	2 cut(s)	198, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	4 cut(s)	242, 392, 470, 509
AluI	AGCT	4 cut(s)	242, 392, 470, 509
Alw26I	GTCTC	2 cut(s)	75, 441
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	389, 459
ApoI	RAATTY	2 cut(s)	199, 332
AspLEI	GCGC	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	281, 393
BbvI	GCAGC	2 cut(s)	401, 471
BccI	CCATC	1 cut(s)	460
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	75, 441
BfaI	CTAG	2 cut(s)	6, 441
BfmI	CTRYAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	2 cut(s)	390, 460
BlsI	GCNGC	2 cut(s)	391, 461
BmsI	GCATC	2 cut(s)	290, 376
BsaI	GGTCTC	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	73
BseGI	GGATG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	401, 471
BshFI	GGCC	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	74, 346
BsmAI	GTCTC	2 cut(s)	75, 441
BsmI	GAATGC	2 cut(s)	169, 303
BsnI	GGCC	1 cut(s)	349
Bso31I	GGTCTC	1 cut(s)	441
Bsp13I	TCCGGA	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	494
BspACI	CCGC	2 cut(s)	20, 414
BspANI	GGCC	1 cut(s)	349
BspEI	TCCGGA	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	511
BstF5I	GGATG	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	316
BstMAI	GTCTC	2 cut(s)	75, 441
BstNSI	RCATGY	2 cut(s)	215, 495
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	401, 471
BstXI	CCANNNNNNTGG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	511
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	5 cut(s)	179, 212, 355, 373, 492
CviJI	RGCY	6 cut(s)	5, 242, 349, 392, 470, 509
CviKI_1	RGCY	6 cut(s)	5, 242, 349, 392, 470, 509
CviQI	GTAC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	305
FaeI	CATG	5 cut(s)	182, 215, 358, 376, 495
FatI	CATG	5 cut(s)	178, 211, 354, 372, 491
FauI	CCCGC	1 cut(s)	421
FauNDI	CATATG	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	390, 460
FokI	GGATG	1 cut(s)	439
Fsp4HI	GCNGC	2 cut(s)	390, 460
FspBI	CTAG	2 cut(s)	6, 441
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	2 cut(s)	390, 460
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	2 cut(s)	74, 346
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	182, 215, 358, 376, 495
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	3 cut(s)	257, 272, 436
HpaII	CCGG	2 cut(s)	74, 346
HphI	GGTGA	2 cut(s)	281, 393
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	83, 227, 408, 458
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	4 cut(s)	303, 328, 338, 389
Hsp92II	CATG	5 cut(s)	182, 215, 358, 376, 495
HspAI	GCGC	1 cut(s)	314
Kpn2I	TCCGGA	1 cut(s)	73
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	5 cut(s)	87, 125, 153, 359, 469
Lsp1109I	GCAGC	2 cut(s)	401, 471
LweI	GCATC	2 cut(s)	290, 376
MaeI	CTAG	2 cut(s)	6, 441
MaeIII	GTNAC	1 cut(s)	487
MbiI	CCGCTC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	386
MluCI	AATT	6 cut(s)	193, 199, 309, 332, 472, 498
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	2 cut(s)	33, 187
MnlI	CCTC	1 cut(s)	175
Mph1103I	ATGCAT	1 cut(s)	305
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	1 cut(s)	83
MspI	CCGG	2 cut(s)	74, 346
Mva1269I	GAATGC	2 cut(s)	169, 303
NdeI	CATATG	1 cut(s)	60
NlaIII	CATG	5 cut(s)	182, 215, 358, 376, 495
NmuCI	GTSAC	1 cut(s)	487
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	2 cut(s)	215, 495
PciI	ACATGT	2 cut(s)	211, 491
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	2 cut(s)	169, 303
PfeI	GAWTC	2 cut(s)	257, 272
PkrI	GCNGC	2 cut(s)	391, 461
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PscI	ACATGT	2 cut(s)	211, 491
PsiI	TTATAA	1 cut(s)	296
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	2 cut(s)	390, 460
SchI	GAGTC	1 cut(s)	445
SetI	ASST	7 cut(s)	244, 271, 282, 382, 394, 472, 511
SfaNI	GCATC	2 cut(s)	290, 376
SfcI	CTRYAG	1 cut(s)	264
Sse9I	AATT	6 cut(s)	193, 199, 309, 332, 472, 498
SsiI	CCGC	2 cut(s)	20, 414
SspI	AATATT	2 cut(s)	12, 80
SspMI	CTAG	2 cut(s)	6, 441
TaaI	ACNGT	1 cut(s)	96
TasI	AATT	6 cut(s)	193, 199, 309, 332, 472, 498
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	257, 272
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	2 cut(s)	389, 459
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	77, 249
XapI	RAATTY	2 cut(s)	199, 332
XceI	RCATGY	2 cut(s)	215, 495
XspI	CTAG	2 cut(s)	6, 441
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.