Rorug03G0271800
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
26796356 .. 26801381
5026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0271800.1

Sequence Viewer

Length: 1428 bp
ATGGTGGGGAGCATTGAGGCTGCGAATGGAAGTTTGCACTCAAATGGGTCTGTTCAGAATTTCAATGGTTTGGAAGAGAAGCTTGATGAGCTGCGGCGCATTGTAGGCAAGGCTGATGGTGATCCATTGAGAATTGTTGGTGTTGGGGCAGGTGCTTGGGGTAGTGTTTTTGCAGCTGTTTTGCAAGATAGCTATGGTCAGTTTCGAGACAAGATTCAAATAAGGATATGGAGAAGAGCAGGAAGGGCTGTGGATAGAGTCACCGCTGAACATCTTTTTGAAGTGATCAATTCAAGGGAGGATGTGTTGAGGAGGCTGATCAGGCGCTGCGCGTATTTGAAATATGTGGAGGCAAGGCTAGGGGACCGGACACTTTATGCAGATGAGATTTTGAAAGATGGGTTTTGTTTGAACATGATTGATACACCACTTTGTCATTTGAAGGTGGTGACCAATTTGCAGGAGGCTGTCTGGGATGCCGATATCGTGGTAAACGGCTTGCCTTCAACTGAAACAAAAGTGGTGTTTGAAGAGATTAGTAATTATTGGAAGGAAAGAATCACAGATCCCATTATCATCTCTTTGGCCAAAGGTATTGAGGCTGCACTCAAGCCTCTTCCACATATTATAACTCCCACGCAGATTATTTACCGCGCAACTGGAATCCCTCTGGAGAACATACTTTATCTGGGTGGACCAAATATTGCCTCGGAGATTTACAACAAGGAATATGCAAATGCTCGAATTTGTGGAGCTGAGAAGTGGAGAAAACCTCTGGCCAAGTTTTTAAGGCAACCCCATTTTATTGTCTGGGACAATAGCGACCTTGTTACGCATGAAGTCATGGGTGGTTTAAAGAATGTATATGCCATTGGAGCAGGGATGGTAGCAGCCCTCACAAAGGAGAGTGCTACCAGCAAGTCTGTATACTTTGCACATTGTACGTCGGAGATGATATTTATTACTCATTTGCTGGCTGAAGAGCCTGAGAAGCTTGCAGGGCCTTTGCTGGCTGACACATATGTTACCTTACTGAAAGGAAGAAATGCGTGGTATGGGCAAATGTTAGCCAAAGGTGAAATCAACCGGGATATGGGTGAGAACATCAGTGGAAAAGGAATGATTCAGGGTGTCTCTGCAGTCCAAGCATTTTATGAACTTCTCAGTCAATCGAGCCTGAATGTGTTGCATCCTGAAGAAAACAAGCCTGTTGCTCCAGTAGAGCTCTGCCCCATCTTGAAGACACTATATAAAATATTGATAACAAGGGAGCAATCATCACAAGCTATTCTTCAAGCATTGAGGGATGAGAATTTAAATGATCCAAGGGAACGCATTGAGATTGCGCAGAGCCATGTCTTCTATAGACCTTCACTTCTGGGGCAGCCTCTGAATAATTTGAAAGTGCAAGAGAAAGTGGTAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

53.02

Weight (kDa)

6.58

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_Gly3P_dh_N PF01210 146 - 247 1.9e-10 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C PF07479 275 - 429 1.4e-19 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AarI CACCTGC 1 cut(s) 140
Acc16I TGCGCA 1 cut(s) 1347
Acc36I ACCTGC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 927
AccII CGCG 2 cut(s) 332, 654
AciI CCGC 3 cut(s) 94, 264, 652
AclWI GGATC 3 cut(s) 116, 560, 1316
AcoI YGGCCR 2 cut(s) 585, 777
AcsI RAATTY 3 cut(s) 58, 744, 1312
AcuI CTGAAG 2 cut(s) 999, 1215
AfaI GTAC 1 cut(s) 943
AfiI CCNNNNNNNGG 2 cut(s) 901, 1093
AluBI AGCT 8 cut(s) 82, 91, 176, 192, 755, 994, 1225, 1286
AluI AGCT 8 cut(s) 82, 91, 176, 192, 755, 994, 1225, 1286
Alw21I GWGCWC 1 cut(s) 1227
Alw26I GTCTC 2 cut(s) 201, 1138
AlwI GGATC 3 cut(s) 116, 560, 1316
AlwNI CAGNNNCTG 2 cut(s) 327, 1390
AoxI GGCC 3 cut(s) 585, 777, 1001
ApeKI GCWGC 7 cut(s) 20, 91, 173, 327, 602, 890, 1384
ApoI RAATTY 3 cut(s) 58, 744, 1312
AspLEI GCGC 5 cut(s) 99, 327, 332, 656, 1348
AspS9I GGNCC 3 cut(s) 364, 695, 1001
AsuC2I CCSGG 1 cut(s) 1088
AsuHPI GGTGA 5 cut(s) 131, 253, 460, 1088, 1109
AvaII GGWCC 2 cut(s) 364, 695
BalI TGGCCA 2 cut(s) 587, 779
BanII GRGCYC 1 cut(s) 1227
BbsI GAAGAC 2 cut(s) 1247, 1351
Bbv12I GWGCWC 1 cut(s) 1227
BbvI GCAGC 7 cut(s) 7, 78, 185, 314, 589, 902, 1396
BccI CCATC 4 cut(s) 110, 392, 877, 1241
BceAI ACGGC 1 cut(s) 511
BclI TGATCA 2 cut(s) 285, 318
BcnI CCSGG 1 cut(s) 1088
BcoDI GTCTC 2 cut(s) 201, 1138
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 2 cut(s) 1137, 1363
BfoI RGCGCY 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 8 cut(s) 21, 92, 95, 174, 328, 603, 891, 1385
BlsI GCNGC 8 cut(s) 22, 93, 96, 175, 329, 604, 892, 1386
Bme1390I CCNGG 1 cut(s) 1088
Bme18I GGWCC 2 cut(s) 364, 695
BmgT120I GGNCC 3 cut(s) 364, 695, 1001
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 1088
BmsI GCATC 2 cut(s) 466, 1198
BpiI GAAGAC 2 cut(s) 1247, 1351
BplI GAGNNNNNCTC 2 cut(s) 757, 789
BpmI CTGGAG 2 cut(s) 692, 1200
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 1088
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 708, 1325
BsaWI WCCGGW 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 2 cut(s) 901, 1093
Bse1I ACTGG 2 cut(s) 664, 1217
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 708, 1325
BseGI GGATG 5 cut(s) 307, 481, 888, 1189, 1312
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 901, 1093
BseMII CTCAG 3 cut(s) 747, 978, 1177
BseNI ACTGG 2 cut(s) 664, 1217
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 7 cut(s) 7, 78, 185, 314, 589, 902, 1396
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 2 cut(s) 332, 654
BshFI GGCC 3 cut(s) 587, 779, 1003
BsiHKAI GWGCWC 1 cut(s) 1227
BsiSI CCGG 2 cut(s) 367, 1087
BslFI GGGAC 2 cut(s) 377, 827
BslI CCNNNNNNNGG 2 cut(s) 901, 1093
BsmAI GTCTC 2 cut(s) 201, 1138
BsmFI GGGAC 2 cut(s) 377, 827
BsnI GGCC 3 cut(s) 587, 779, 1003
Bsp1286I GDGCHC 1 cut(s) 1227
Bsp143I GATC 5 cut(s) 121, 285, 318, 565, 1321
BspACI CCGC 3 cut(s) 94, 264, 652
BspANI GGCC 3 cut(s) 587, 779, 1003
BspCNI CTCAG 3 cut(s) 748, 979, 1176
BspFNI CGCG 2 cut(s) 332, 654
BspLI GGNNCC 1 cut(s) 365
BspMAI CTGCAG 1 cut(s) 1141
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 3 cut(s) 116, 560, 1316
BspQI GCTCTTC 2 cut(s) 229, 975
BsrI ACTGG 2 cut(s) 664, 1217
BssECI CCNNGG 2 cut(s) 708, 1325
BssMI GATC 5 cut(s) 121, 285, 318, 565, 1321
BssNAI GTATAC 1 cut(s) 928
BssT1I CCWWGG 1 cut(s) 1325
Bst1107I GTATAC 1 cut(s) 928
Bst6I CTCTTC 5 cut(s) 69, 229, 525, 621, 975
BstC8I GCNNGC 4 cut(s) 500, 975, 996, 1011
BstDEI CTNAG 3 cut(s) 756, 987, 1163
BstEII GGTNACC 1 cut(s) 448
BstENI CCTNNNNNAGG 1 cut(s) 899
BstF5I GGATG 5 cut(s) 307, 481, 888, 1189, 1312
BstFNI CGCG 2 cut(s) 332, 654
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 5 cut(s) 99, 327, 332, 656, 1348
BstKTI GATC 5 cut(s) 124, 288, 321, 568, 1324
BstMAI GTCTC 2 cut(s) 201, 1138
BstMBI GATC 5 cut(s) 121, 285, 318, 565, 1321
BstMWI GCNNNNNNNGC 8 cut(s) 88, 105, 245, 322, 875, 991, 1000, 1145
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 1086
BstSFI CTRYAG 2 cut(s) 1137, 1363
BstUI CGCG 2 cut(s) 332, 654
BstV1I GCAGC 7 cut(s) 7, 78, 185, 314, 589, 902, 1396
BstV2I GAAGAC 2 cut(s) 1247, 1351
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BstZ17I GTATAC 1 cut(s) 928
BsuRI GGCC 3 cut(s) 587, 779, 1003
BtsCI GGATG 5 cut(s) 307, 481, 888, 1189, 1312
BtsIMutI CAGTG 1 cut(s) 1114
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 4 cut(s) 500, 975, 996, 1011
CaiI CAGNNNCTG 2 cut(s) 327, 1390
CfoI GCGC 5 cut(s) 99, 327, 332, 656, 1348
Cfr13I GGNCC 3 cut(s) 364, 695, 1001
Csp6I GTAC 1 cut(s) 942
CviAII CATG 4 cut(s) 415, 836, 844, 1355
CviQI GTAC 1 cut(s) 942
DdeI CTNAG 3 cut(s) 756, 987, 1163
DpnI GATC 5 cut(s) 123, 287, 320, 567, 1323
DpnII GATC 5 cut(s) 121, 285, 318, 565, 1321
DraI TTTAAA 2 cut(s) 855, 1317
EaeI YGGCCR 2 cut(s) 585, 777
Eam1104I CTCTTC 5 cut(s) 69, 229, 525, 621, 975
EarI CTCTTC 5 cut(s) 69, 229, 525, 621, 975
Ecl136II GAGCTC 1 cut(s) 1225
Eco130I CCWWGG 1 cut(s) 1325
Eco24I GRGCYC 1 cut(s) 1227
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 364, 695
Eco53kI GAGCTC 1 cut(s) 1225
Eco57I CTGAAG 2 cut(s) 999, 1215
Eco91I GGTNACC 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 1225
EcoNI CCTNNNNNAGG 1 cut(s) 899
EcoO109I RGGNCCY 1 cut(s) 1001
EcoO65I GGTNACC 1 cut(s) 448
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 1325
EcoT38I GRGCYC 1 cut(s) 1227
ErhI CCWWGG 1 cut(s) 1325
FaeI CATG 4 cut(s) 418, 839, 847, 1358
FalI AAGNNNNNCTT 4 cut(s) 66, 98, 1275, 1307
FaqI GGGAC 2 cut(s) 377, 827
FatI CATG 4 cut(s) 414, 835, 843, 1354
FauNDI CATATG 1 cut(s) 1021
FbaI TGATCA 2 cut(s) 285, 318
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 8 cut(s) 21, 92, 95, 174, 328, 603, 891, 1385
FokI GGATG 5 cut(s) 314, 488, 895, 1176, 1319
FriOI GRGCYC 1 cut(s) 1227
Fsp4HI GCNGC 8 cut(s) 21, 92, 95, 174, 328, 603, 891, 1385
FspBI CTAG 1 cut(s) 359
FspI TGCGCA 1 cut(s) 1347
GlaI GCGC 5 cut(s) 98, 326, 331, 655, 1347
GluI GCNGC 8 cut(s) 21, 92, 95, 174, 328, 603, 891, 1385
GsuI CTGGAG 2 cut(s) 692, 1200
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 3 cut(s) 587, 779, 1003
HapII CCGG 2 cut(s) 367, 1087
HhaI GCGC 5 cut(s) 99, 327, 332, 656, 1348
Hin1II CATG 4 cut(s) 418, 839, 847, 1358
Hin6I GCGC 5 cut(s) 97, 325, 330, 654, 1346
HinP1I GCGC 5 cut(s) 97, 325, 330, 654, 1346
HindIII AAGCTT 2 cut(s) 80, 992
HinfI GANTC 5 cut(s) 214, 258, 558, 663, 1123
HpaII CCGG 2 cut(s) 367, 1087
HphI GGTGA 5 cut(s) 131, 253, 460, 1088, 1109
Hpy166II GTNNAC 3 cut(s) 493, 695, 928
Hpy188I TCNGA 4 cut(s) 57, 712, 949, 1392
Hpy188III TCNNGA 4 cut(s) 206, 671, 1193, 1237
Hpy8I GTNNAC 3 cut(s) 493, 695, 928
Hpy99I CGWCG 1 cut(s) 949
HpyAV CCTTC 5 cut(s) 237, 436, 513, 544, 1380
HpyCH4IV ACGT 1 cut(s) 944
HpyF10VI GCNNNNNNNGC 8 cut(s) 88, 105, 245, 322, 875, 991, 1000, 1145
HpyF3I CTNAG 3 cut(s) 756, 987, 1163
HpySE526I ACGT 1 cut(s) 944
Hsp92II CATG 4 cut(s) 418, 839, 847, 1358
HspAI GCGC 5 cut(s) 97, 325, 330, 654, 1346
Ksp22I TGATCA 2 cut(s) 285, 318
Kzo9I GATC 5 cut(s) 121, 285, 318, 565, 1321
LguI GCTCTTC 2 cut(s) 229, 975
LmnI GCTCC 5 cut(s) 9, 752, 875, 1219, 1270
Lsp1109I GCAGC 7 cut(s) 7, 78, 185, 314, 589, 902, 1396
LweI GCATC 2 cut(s) 466, 1198
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 944
MaeIII GTNAC 5 cut(s) 259, 448, 829, 1024, 1420
MalI GATC 5 cut(s) 123, 287, 320, 567, 1323
MboI GATC 5 cut(s) 121, 285, 318, 565, 1321
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 1227
MlsI TGGCCA 2 cut(s) 587, 779
MluCI AATT 8 cut(s) 58, 132, 289, 454, 541, 744, 1312, 1396
MluNI TGGCCA 2 cut(s) 587, 779
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 927
Mox20I TGGCCA 2 cut(s) 587, 779
MscI TGGCCA 2 cut(s) 587, 779
MseI TTAA 3 cut(s) 788, 854, 1316
MslI CAYNNNNRTG 1 cut(s) 42
Msp20I TGGCCA 2 cut(s) 587, 779
MspA1I CMGCKG 2 cut(s) 176, 266
MspI CCGG 2 cut(s) 367, 1087
MspR9I CCNGG 1 cut(s) 1088
MteI GCGCNGCGC 1 cut(s) 328
MvnI CGCG 2 cut(s) 332, 654
MwoI GCNNNNNNNGC 8 cut(s) 88, 105, 245, 322, 875, 991, 1000, 1145
NciI CCSGG 1 cut(s) 1088
NdeI CATATG 1 cut(s) 1021
NdeII GATC 5 cut(s) 121, 285, 318, 565, 1321
NlaIII CATG 4 cut(s) 418, 839, 847, 1358
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 259, 448
NsbI TGCGCA 1 cut(s) 1347
PaqCI CACCTGC 1 cut(s) 140
PciSI GCTCTTC 2 cut(s) 229, 975
PfeI GAWTC 4 cut(s) 214, 558, 663, 1123
PkrI GCNGC 8 cut(s) 22, 93, 96, 175, 329, 604, 892, 1386
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PsiI TTATAA 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 1227
PspEI GGTNACC 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 3 cut(s) 364, 695, 1001
PstI CTGCAG 1 cut(s) 1141
PstNI CAGNNNCTG 2 cut(s) 327, 1390
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 943
RsaNI GTAC 1 cut(s) 942
RseI CAYNNNNRTG 1 cut(s) 42
SacI GAGCTC 1 cut(s) 1227
SapI GCTCTTC 2 cut(s) 229, 975
SaqAI TTAA 3 cut(s) 788, 854, 1316
SatI GCNGC 8 cut(s) 21, 92, 95, 174, 328, 603, 891, 1385
Sau3AI GATC 5 cut(s) 121, 285, 318, 565, 1321
Sau96I GGNCC 3 cut(s) 364, 695, 1001
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 1088
SduI GDGCHC 1 cut(s) 1227
SfaNI GCATC 2 cut(s) 466, 1198
SfcI CTRYAG 2 cut(s) 1137, 1363
SinI GGWCC 2 cut(s) 364, 695
SmiI ATTTAAAT 1 cut(s) 1317
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 8 cut(s) 58, 132, 289, 454, 541, 744, 1312, 1396
SsiI CCGC 3 cut(s) 94, 264, 652
SspI AATATT 2 cut(s) 703, 1257
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 1227
StyD4I CCNGG 1 cut(s) 1086
StyI CCWWGG 1 cut(s) 1325
SwaI ATTTAAAT 1 cut(s) 1317
TaiI ACGT 1 cut(s) 947
TaqI TCGA 3 cut(s) 205, 742, 1172
TasI AATT 8 cut(s) 58, 132, 289, 454, 541, 744, 1312, 1396
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 4 cut(s) 214, 558, 663, 1123
Tru1I TTAA 3 cut(s) 788, 854, 1316
Tru9I TTAA 3 cut(s) 788, 854, 1316
TscAI CASTG 1 cut(s) 1114
TseFI GTSAC 2 cut(s) 259, 448
TseI GCWGC 7 cut(s) 20, 91, 173, 327, 602, 890, 1384
Tsp45I GTSAC 2 cut(s) 259, 448
TspDTI ATGAA 2 cut(s) 852, 1170
TspRI CASTG 1 cut(s) 1114
VpaK11BI GGWCC 2 cut(s) 364, 695
XagI CCTNNNNNAGG 1 cut(s) 899
XapI RAATTY 3 cut(s) 58, 744, 1312
XmiI GTMKAC 1 cut(s) 927
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.