Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Reverse (-)

1829509 .. 1835290

Gene Structure 5782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1029800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2142 bp

ATGCCAGGGGGTTCCGCTATCAGATCCCATCCGAGCTTTTCTCGTTCCTTCTGCTCTCCAAGGCGACGCCGTCAGTGCACTCTTCCCATGGCTGCCACTGCAACTGCCGCTGGTCCTCGATATGCTCCGGAGGACCCAACTCTTCCCAAACCATGGAGAGGACTCGTTGATGGTAAAACTGGGTATCTTTACTACTGGAACCCCGAGACCAATGTCACCCAATATGATAGGCCGACTGGCTCAGTTGCTCCATCAAAGCCTTCTTCAGCACAGTCTATAAGCTCTTCAGTTCACGTTCACCAATCTTCACAAGGACAACGTCGTCCTGATGAGGGAGATGATAGGTATGGCAGAGGCAGCAATGGTGGGTCCAAGTTTGACACAGGATCAAGAAATCAGCAGACTGCAAGAAGTGCAACAGTGTCTTCTCATAATACCCCGAGTGGGACACTAAGTGCACATGGAGGATCTTCTTTGAAAGGAAATGGATCAGACAATGGAAGCGGTTTGTCTGCTGAGGCTTATAGTCGCCGACATGAAATATCTGTTGTTGGTGATAATGTGCCTCCACCGTTTACTTCATTTGAATCTACTGGCTTCCCATCTGAGATTCTTAGAGAGGTGCGATATTTGCTCCTGGGAGGAGCTAATGTCGTACAAAAAGAAGGTTTCTCTGCCCCAACTCCAATTCAAGCACAGTCTTGGCCGGTTGCTCTTCAAAGTAGAGATATAGTAGCCATTGCTAAAACTGGTTCCGGGAAGACCTTGGGGTATTTACTTCCAGGATTTATCCATCTCAAGCGTGCCCGCAATAACCCTCAGATGGGTCCAACTGTATTGGTGTTATCACCAACTAGGGAGCTGGCAACACAGATTTTAGATGAGGCAGTGAAGTTCGGGAAGTCGTCAAGGATATCTTGTGTGTGTTTGTACGGAGGAGCTCCAAAGGGTCCACAGTTGAGAGACATTGACCGAGGAGCAGATGTTGTGGTTGCCACTCCTGGTCGCTTGAATGATATTCTTGAAATGAAGAGAATCAGTCTCCATCAAGTTTCTTACTTAGTGTTGGATGAGGCTGACCGGATGCTGGACATGGGGTTTGAACCACAAATAAGGAAGATTGTGAAGGAGATACCTGCTCGTCGCCAGACCCTAATGTATACAGCAACTTGGCCAAAGGAGGTTCGGAAGATTGCAGCTGATCTGCTGGTCAAACCTGTTCAGGTTAACATTGGCAATGTTGATGAACTGGTTGCGAATAAGTCTATCACACAGTATGTTGAAGTACTGACGTCAATGGAGAAGCACAGACGACTGGAGCAGCTTTTGCGATCTCAAGAGCCAGGATCGAAGATAATAATCTTTTGTTCAACCAAGAAGATGTGCGATCAACTTTCTCGCAACCTAACCCGCCAGTTTGGAGCTGCTGCAATTCATGGCGACAAATCTCAGAGTGAGAGGGATTATGTGTTGAATCAATTTCGCTCTGGAAGGACTCCAATTCTTGTAGCAACTGATGTTGCAGCTCGAGGATTGGACATCAAGGACATAAGGGTGGTTATCAACTACGACTTCCCTACTGGAGTAGAGGATTATGTTCACAGGATTGGGAGAACTGGAAGAGCGGGCGCCACTGGCCTGGCTTACACATTTTTCGGTGATCAGGATGCCAAGTATGCATCAGATCTCATCAAAGTTTTGGAAGGGGCTAATCAGCGTGTCCCCCCAGAAGTTCGTGAGCTAGCTTCCCGTGGTGGAGGGATGAACCGGTTCAGACGTTGGGGTTCTGGGCCCAGTGGTGGTCGTGATGGGGGTCGTGGTGGGCGAAATGATTCAAGTTATGGAGGAAGGGATGGTGGAAGGGGAGGAGGATATGGATTTACTCCCTCTTCTGGCAGGTATGGTCAAACCAATGGGTATGACAGAGGCCGCAGTCCCAGCCCTGTCAAGGCGTCAGGATATAGAGCCCGTAGCCGTAGTCCTGAGAGGTTTGCCAAGGCTCTGCCAACAGGTGGAGGCTCTGCTGGTGGTTGGAGTTTCCACAAATCAATGATGGAACGGGAGAGGGAGAGGACACGGTCGTCGCCTCCACGTAAACGCAGTGCTGAGGAAGCTGAGGAGGGCATGATACATCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

714

Amino Acids

77.58

Weight (kDa)

9.91

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	48 - 78	6.3e-07	WW domain
DEAD	PF00270	228 - 397	7.5e-49	DEAD/DEAH box helicase
ResIII	PF04851	240 - 391	3e-07	Type III restriction enzyme, res subunit
Helicase_C	PF00271	435 - 543	1.8e-35	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	321, 2080
AatII	GACGTC	1 cut(s)	1295
Acc36I	ACCTGC	2 cut(s)	1144, 1887
AccB1I	GGYRCC	1 cut(s)	1628
AccB7I	CCANNNNNTGG	2 cut(s)	153, 2012
AccBSI	CCGCTC	1 cut(s)	1625
AccI	GTMKAC	1 cut(s)	1160
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	7 cut(s)	15, 108, 504, 808, 1411, 1625, 1930
AclWI	GGATC	5 cut(s)	18, 394, 475, 496, 1354
AcoI	YGGCCR	2 cut(s)	704, 1172
AcuI	CTGAAG	2 cut(s)	249, 270
AcyI	GRCGYC	4 cut(s)	67, 1292, 1629, 1952
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	657, 932, 1287
AgeI	ACCGGT	1 cut(s)	1767
AjnI	CCWGG	6 cut(s)	4, 636, 781, 1000, 1342, 1638
Alw21I	GWGCWC	3 cut(s)	80, 460, 943
Alw26I	GTCTC	3 cut(s)	200, 957, 1046
Alw44I	GTGCAC	2 cut(s)	76, 456
AlwI	GGATC	5 cut(s)	18, 394, 475, 496, 1354
Ama87I	CYCGRG	3 cut(s)	203, 439, 1527
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	6 cut(s)	230, 704, 1172, 1636, 1790, 1927
ApaI	GGGCCC	1 cut(s)	1794
ApaLI	GTGCAC	2 cut(s)	76, 456
ApeKI	GCWGC	7 cut(s)	92, 357, 1196, 1321, 1424, 1427, 1523
ArsI	GACNNNNNNTTYG	2 cut(s)	1082, 1114
AsiGI	ACCGGT	1 cut(s)	1767
Asp700I	GAANNNNTTC	2 cut(s)	1769, 1831
AspLEI	GCGC	1 cut(s)	1631
AspS9I	GGNCC	7 cut(s)	113, 133, 369, 827, 950, 1790, 1791
AsuC2I	CCSGG	1 cut(s)	757
AsuHPI	GGTGA	5 cut(s)	208, 290, 566, 840, 1670
AsuNHI	GCTAGC	1 cut(s)	1741
AvaI	CYCGRG	3 cut(s)	203, 439, 1527
AvaII	GGWCC	5 cut(s)	113, 133, 369, 827, 950
BaeGI	GKGCMC	4 cut(s)	80, 460, 808, 1794
BalI	TGGCCA	1 cut(s)	1174
BanI	GGYRCC	1 cut(s)	1628
BanII	GRGCYC	3 cut(s)	943, 1794, 1969
BbsI	GAAGAC	2 cut(s)	417, 767
Bbv12I	GWGCWC	3 cut(s)	80, 460, 943
BbvCI	CCTCAGC	3 cut(s)	516, 2106, 2115
BbvI	GCAGC	7 cut(s)	79, 369, 1208, 1333, 1411, 1414, 1535
BceAI	ACGGC	2 cut(s)	54, 1959
BciT130I	CCWGG	6 cut(s)	6, 638, 783, 1002, 1344, 1640
BclI	TGATCA	1 cut(s)	1660
BcnI	CCSGG	1 cut(s)	757
BcoDI	GTCTC	3 cut(s)	200, 957, 1046
BfaI	CTAG	2 cut(s)	855, 1742
BfoI	RGCGCY	1 cut(s)	1632
BfuAI	ACCTGC	2 cut(s)	1144, 1887
BglII	AGATCT	1 cut(s)	1684
BisI	GCNGC	9 cut(s)	93, 108, 358, 1197, 1322, 1425, 1428, 1524, 1930
BlsI	GCNGC	9 cut(s)	94, 109, 359, 1198, 1323, 1426, 1429, 1525, 1931
BmcAI	AGTACT	1 cut(s)	1287
Bme1390I	CCNGG	7 cut(s)	6, 638, 757, 783, 1002, 1344, 1640
Bme18I	GGWCC	5 cut(s)	113, 133, 369, 827, 950
BmeT110I	CYCGRG	3 cut(s)	203, 439, 1527
BmgT120I	GGNCC	7 cut(s)	113, 133, 369, 827, 950, 1790, 1791
BmiI	GGNNCC	9 cut(s)	13, 135, 200, 370, 754, 828, 951, 1630, 1792
BmrFI	CCNGG	7 cut(s)	6, 638, 757, 783, 1002, 1344, 1640
BmrI	ACTGGG	2 cut(s)	189, 1788
BmsI	GCATC	3 cut(s)	1074, 1657, 1688
BmtI	GCTAGC	1 cut(s)	1745
BmuI	ACTGGG	2 cut(s)	189, 1788
BoxI	GACNNNNGTC	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	417, 767
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	2 cut(s)	1337, 1602
Bpu10I	CCTNAGC	3 cut(s)	516, 2106, 2115
BpuEI	CTTGAG	2 cut(s)	782, 1320
BpuMI	CCSGG	1 cut(s)	757
BsaAI	YACGTR	1 cut(s)	2093
BsaBI	GATNNNNATC	1 cut(s)	1358
BsaHI	GRCGYC	4 cut(s)	67, 1292, 1629, 1952
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	9 cut(s)	5, 59, 87, 152, 637, 765, 973, 1750, 1995
BsaWI	WCCGGW	3 cut(s)	127, 1080, 1767
BsaXI	ACNNNNNCTCC	4 cut(s)	636, 666, 969, 999
Bse118I	RCCGGY	2 cut(s)	706, 1767
Bse3DI	GCAATG	3 cut(s)	367, 738, 1243
Bse8I	GATNNNNATC	1 cut(s)	1358
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	6 cut(s)	6, 638, 783, 1002, 1344, 1640
BseDI	CCNNGG	9 cut(s)	5, 59, 87, 152, 637, 765, 973, 1750, 1995
BseGI	GGATG	7 cut(s)	28, 1075, 1089, 1672, 1767, 1858, 2131
BseJI	GATNNNNATC	1 cut(s)	1358
BseMI	GCAATG	3 cut(s)	367, 738, 1243
BseMII	CTCAG	8 cut(s)	255, 507, 597, 833, 1463, 1974, 2097, 2106
BseRI	GAGGAG	5 cut(s)	657, 951, 990, 1881, 2132
BseSI	GKGCMC	4 cut(s)	80, 460, 808, 1794
BseXI	GCAGC	7 cut(s)	79, 369, 1208, 1333, 1411, 1414, 1535
BseYI	CCCAGC	1 cut(s)	1937
Bsh1285I	CGRYCG	1 cut(s)	2081
BshFI	GGCC	6 cut(s)	232, 706, 1174, 1638, 1792, 1929
BshNI	GGYRCC	1 cut(s)	1628
BshTI	ACCGGT	1 cut(s)	1767
BsiEI	CGRYCG	1 cut(s)	2081
BsiHKAI	GWGCWC	3 cut(s)	80, 460, 943
BsiHKCI	CYCGRG	3 cut(s)	203, 439, 1527
BsiSI	CCGG	5 cut(s)	128, 707, 756, 1081, 1768
BslFI	GGGAC	3 cut(s)	460, 1706, 1920
BsmAI	GTCTC	3 cut(s)	200, 957, 1046
BsmFI	GGGAC	3 cut(s)	460, 1706, 1920
BsnI	GGCC	6 cut(s)	232, 706, 1174, 1638, 1792, 1929
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	3 cut(s)	203, 439, 1527
Bsp120I	GGGCCC	1 cut(s)	1790
Bsp1286I	GDGCHC	6 cut(s)	80, 460, 808, 943, 1794, 1969
Bsp13I	TCCGGA	1 cut(s)	127
Bsp19I	CCATGG	2 cut(s)	87, 152
BspACI	CCGC	7 cut(s)	15, 108, 504, 808, 1411, 1625, 1930
BspANI	GGCC	6 cut(s)	232, 706, 1174, 1638, 1792, 1929
BspCNI	CTCAG	8 cut(s)	254, 508, 598, 832, 1462, 1975, 2098, 2107
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	9 cut(s)	13, 135, 200, 370, 754, 828, 951, 1630, 1792
BspMI	ACCTGC	2 cut(s)	1144, 1887
BspOI	GCTAGC	1 cut(s)	1745
BspPI	GGATC	5 cut(s)	18, 394, 475, 496, 1354
BspQI	GCTCTTC	3 cut(s)	289, 720, 1615
BspT107I	GGYRCC	1 cut(s)	1628
BspTNI	GGTCTC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	1625
BsrDI	GCAATG	3 cut(s)	367, 738, 1243
BsrFI	RCCGGY	2 cut(s)	706, 1767
BssAI	RCCGGY	2 cut(s)	706, 1767
BssECI	CCNNGG	9 cut(s)	5, 59, 87, 152, 637, 765, 973, 1750, 1995
BssNAI	GTATAC	1 cut(s)	1161
BssNI	GRCGYC	4 cut(s)	67, 1292, 1629, 1952
BssT1I	CCWWGG	5 cut(s)	59, 87, 152, 765, 1995
Bst1107I	GTATAC	1 cut(s)	1161
Bst2UI	CCWGG	6 cut(s)	6, 638, 783, 1002, 1344, 1640
Bst4CI	ACNGT	8 cut(s)	273, 421, 573, 699, 835, 957, 1275, 2079
Bst6I	CTCTTC	7 cut(s)	87, 147, 289, 720, 1025, 1615, 1894
BstACI	GRCGYC	4 cut(s)	67, 1292, 1629, 1952
BstAPI	GCANNNNNTGC	2 cut(s)	413, 1327
BstBAI	YACGTR	1 cut(s)	2093
BstC8I	GCNNGC	5 cut(s)	804, 808, 864, 1627, 1743
BstDSI	CCRYGG	3 cut(s)	87, 152, 1750
BstF5I	GGATG	7 cut(s)	28, 1075, 1089, 1672, 1767, 1858, 2131
BstH2I	RGCGCY	1 cut(s)	1632
BstHHI	GCGC	1 cut(s)	1631
BstMAI	GTCTC	3 cut(s)	200, 957, 1046
BstMCI	CGRYCG	1 cut(s)	2081
BstNI	CCWGG	6 cut(s)	6, 638, 783, 1002, 1344, 1640
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSCI	CCNGG	7 cut(s)	4, 636, 755, 781, 1000, 1342, 1638
BstSLI	GKGCMC	4 cut(s)	80, 460, 808, 1794
BstV1I	GCAGC	7 cut(s)	79, 369, 1208, 1333, 1411, 1414, 1535
BstV2I	GAAGAC	2 cut(s)	417, 767
BstX2I	RGATCY	3 cut(s)	23, 467, 1684
BstXI	CCANNNNNNTGG	1 cut(s)	1639
BstYI	RGATCY	3 cut(s)	23, 467, 1684
BstZ17I	GTATAC	1 cut(s)	1161
BsuRI	GGCC	6 cut(s)	232, 706, 1174, 1638, 1792, 1929
BtgI	CCRYGG	3 cut(s)	87, 152, 1750
BtsCI	GGATG	7 cut(s)	28, 1075, 1089, 1672, 1767, 1858, 2131
BtsI	GCAGTG	3 cut(s)	96, 894, 2107
BtsIMutI	CAGTG	7 cut(s)	80, 96, 426, 894, 1632, 1801, 2107
BveI	ACCTGC	2 cut(s)	1144, 1887
Cac8I	GCNNGC	5 cut(s)	804, 808, 864, 1627, 1743
CfoI	GCGC	1 cut(s)	1631
Cfr10I	RCCGGY	2 cut(s)	706, 1767
Cfr13I	GGNCC	7 cut(s)	113, 133, 369, 827, 950, 1790, 1791
CseI	GACGC	2 cut(s)	75, 1941
Csp6I	GTAC	3 cut(s)	656, 931, 1286
CspAI	ACCGGT	1 cut(s)	1767
CviAII	CATG	7 cut(s)	88, 153, 461, 536, 1093, 1436, 2125
CviQI	GTAC	3 cut(s)	656, 931, 1286
DinI	GGCGCC	1 cut(s)	1630
DraIII	CACNNNGTG	1 cut(s)	455
DrdI	GACNNNNNNGTC	2 cut(s)	321, 2080
DseDI	GACNNNNNNGTC	2 cut(s)	321, 2080
EaeI	YGGCCR	2 cut(s)	704, 1172
Eam1104I	CTCTTC	7 cut(s)	87, 147, 289, 720, 1025, 1615, 1894
EarI	CTCTTC	7 cut(s)	87, 147, 289, 720, 1025, 1615, 1894
Ecl136II	GAGCTC	1 cut(s)	941
Eco130I	CCWWGG	5 cut(s)	59, 87, 152, 765, 1995
Eco24I	GRGCYC	3 cut(s)	943, 1794, 1969
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	915
Eco47I	GGWCC	5 cut(s)	113, 133, 369, 827, 950
Eco53kI	GAGCTC	1 cut(s)	941
Eco57I	CTGAAG	2 cut(s)	249, 270
Eco88I	CYCGRG	3 cut(s)	203, 439, 1527
EcoICRI	GAGCTC	1 cut(s)	941
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	6 cut(s)	4, 636, 781, 1000, 1342, 1638
EcoRV	GATATC	1 cut(s)	915
EcoT14I	CCWWGG	5 cut(s)	59, 87, 152, 765, 1995
EcoT22I	ATGCAT	1 cut(s)	1681
EcoT38I	GRGCYC	3 cut(s)	943, 1794, 1969
EgeI	GGCGCC	1 cut(s)	1630
EheI	GGCGCC	1 cut(s)	1630
ErhI	CCWWGG	5 cut(s)	59, 87, 152, 765, 1995
FaeI	CATG	7 cut(s)	91, 156, 464, 539, 1096, 1439, 2128
FalI	AAGNNNNNCTT	2 cut(s)	901, 933
FaqI	GGGAC	3 cut(s)	460, 1706, 1920
FatI	CATG	7 cut(s)	87, 152, 460, 535, 1092, 1435, 2124
FauI	CCCGC	3 cut(s)	815, 1418, 1618
FbaI	TGATCA	1 cut(s)	1660
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	9 cut(s)	93, 108, 358, 1197, 1322, 1425, 1428, 1524, 1930
FokI	GGATG	7 cut(s)	15, 1082, 1096, 1679, 1774, 1865, 2118
FriOI	GRGCYC	3 cut(s)	943, 1794, 1969
Fsp4HI	GCNGC	9 cut(s)	93, 108, 358, 1197, 1322, 1425, 1428, 1524, 1930
FspBI	CTAG	2 cut(s)	855, 1742
GlaI	GCGC	1 cut(s)	1630
GluI	GCNGC	9 cut(s)	93, 108, 358, 1197, 1322, 1425, 1428, 1524, 1930
GsaI	CCCAGC	1 cut(s)	1941
GsuI	CTGGAG	2 cut(s)	1337, 1602
HaeII	RGCGCY	1 cut(s)	1632
HaeIII	GGCC	6 cut(s)	232, 706, 1174, 1638, 1792, 1929
HapII	CCGG	5 cut(s)	128, 707, 756, 1081, 1768
HgaI	GACGC	2 cut(s)	75, 1941
HhaI	GCGC	1 cut(s)	1631
Hin1I	GRCGYC	4 cut(s)	67, 1292, 1629, 1952
Hin1II	CATG	7 cut(s)	91, 156, 464, 539, 1096, 1439, 2128
Hin6I	GCGC	1 cut(s)	1629
HinP1I	GCGC	1 cut(s)	1629
HincII	GTYRAC	1 cut(s)	1228
HindII	GTYRAC	1 cut(s)	1228
HinfI	GANTC	7 cut(s)	162, 587, 610, 1035, 1474, 1495, 1832
HpaI	GTTAAC	1 cut(s)	1228
HpaII	CCGG	5 cut(s)	128, 707, 756, 1081, 1768
HphI	GGTGA	5 cut(s)	208, 290, 566, 840, 1670
Hpy188I	TCNGA	9 cut(s)	23, 33, 493, 607, 822, 1188, 1452, 1684, 1775
Hpy99I	CGWCG	4 cut(s)	69, 324, 1146, 2086
HpyAV	CCTTC	8 cut(s)	58, 270, 659, 1120, 1485, 1697, 1842, 1854
HpyCH4III	ACNGT	8 cut(s)	273, 421, 573, 699, 835, 957, 1275, 2079
HpyCH4IV	ACGT	5 cut(s)	294, 319, 1292, 1777, 2092
HpyCH4V	TGCA	9 cut(s)	78, 101, 407, 416, 458, 1196, 1430, 1523, 1679
HpySE526I	ACGT	5 cut(s)	294, 319, 1292, 1777, 2092
Hsp92I	GRCGYC	4 cut(s)	67, 1292, 1629, 1952
Hsp92II	CATG	7 cut(s)	91, 156, 464, 539, 1096, 1439, 2128
HspAI	GCGC	1 cut(s)	1629
KasI	GGCGCC	1 cut(s)	1628
Kpn2I	TCCGGA	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	1660
KspAI	GTTAAC	1 cut(s)	1228
LguI	GCTCTTC	3 cut(s)	289, 720, 1615
Lsp1109I	GCAGC	7 cut(s)	79, 369, 1208, 1333, 1411, 1414, 1535
LweI	GCATC	3 cut(s)	1074, 1657, 1688
MaeI	CTAG	2 cut(s)	855, 1742
MaeII	ACGT	5 cut(s)	294, 319, 1292, 1777, 2092
MaeIII	GTNAC	1 cut(s)	214
MbiI	CCGCTC	1 cut(s)	1625
MflI	RGATCY	3 cut(s)	23, 467, 1684
MhlI	GDGCHC	6 cut(s)	80, 460, 808, 943, 1794, 1969
MlsI	TGGCCA	1 cut(s)	1174
MluCI	AATT	4 cut(s)	687, 1431, 1478, 1500
MluNI	TGGCCA	1 cut(s)	1174
Mly113I	GGCGCC	1 cut(s)	1629
MlyI	GAGTC	2 cut(s)	156, 1489
MmeI	TCCRAC	3 cut(s)	854, 1047, 2012
Mox20I	TGGCCA	1 cut(s)	1174
Mph1103I	ATGCAT	1 cut(s)	1681
MroI	TCCGGA	1 cut(s)	127
MroXI	GAANNNNTTC	2 cut(s)	1769, 1831
MscI	TGGCCA	1 cut(s)	1174
MseI	TTAA	1 cut(s)	1227
MslI	CAYNNNNRTG	1 cut(s)	1553
Msp20I	TGGCCA	1 cut(s)	1174
MspA1I	CMGCKG	2 cut(s)	110, 1199
MspI	CCGG	5 cut(s)	128, 707, 756, 1081, 1768
MspR9I	CCNGG	7 cut(s)	6, 638, 757, 783, 1002, 1344, 1640
MvaI	CCWGG	6 cut(s)	6, 638, 783, 1002, 1344, 1640
NarI	GGCGCC	1 cut(s)	1629
NciI	CCSGG	1 cut(s)	757
NcoI	CCATGG	2 cut(s)	87, 152
NheI	GCTAGC	1 cut(s)	1741
NlaIII	CATG	7 cut(s)	91, 156, 464, 539, 1096, 1439, 2128
NlaIV	GGNNCC	9 cut(s)	13, 135, 200, 370, 754, 828, 951, 1630, 1792
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	1681
PaeR7I	CTCGAG	1 cut(s)	1527
PciSI	GCTCTTC	3 cut(s)	289, 720, 1615
PcsI	WCGNNNNNNNCGW	1 cut(s)	1822
PdmI	GAANNNNTTC	2 cut(s)	1769, 1831
PfeI	GAWTC	5 cut(s)	587, 610, 1035, 1474, 1832
PflFI	GACNNNGTC	3 cut(s)	69, 318, 2077
PflMI	CCANNNNNTGG	2 cut(s)	153, 2012
PfoI	TCCNGGA	2 cut(s)	755, 781
PinAI	ACCGGT	1 cut(s)	1767
PkrI	GCNGC	9 cut(s)	94, 109, 359, 1198, 1323, 1426, 1429, 1525, 1931
PleI	GAGTC	2 cut(s)	156, 1489
PluTI	GGCGCC	1 cut(s)	1632
PpsI	GAGTC	2 cut(s)	156, 1489
Ppu21I	YACGTR	1 cut(s)	2093
PpuMI	RGGWCCY	1 cut(s)	133
PshAI	GACNNNNGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	943
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	6 cut(s)	4, 636, 781, 1000, 1342, 1638
PspFI	CCCAGC	1 cut(s)	1937
PspGI	CCWGG	6 cut(s)	4, 636, 781, 1000, 1342, 1638
PspN4I	GGNNCC	9 cut(s)	13, 135, 200, 370, 754, 828, 951, 1630, 1792
PspOMI	GGGCCC	1 cut(s)	1790
PspPI	GGNCC	7 cut(s)	113, 133, 369, 827, 950, 1790, 1791
PspPPI	RGGWCCY	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	1527
PsuI	RGATCY	3 cut(s)	23, 467, 1684
PsyI	GACNNNGTC	3 cut(s)	69, 318, 2077
PvuII	CAGCTG	1 cut(s)	1199
RsaI	GTAC	3 cut(s)	657, 932, 1287
RsaNI	GTAC	3 cut(s)	656, 931, 1286
RseI	CAYNNNNRTG	1 cut(s)	1553
SacI	GAGCTC	1 cut(s)	943
SapI	GCTCTTC	3 cut(s)	289, 720, 1615
SaqAI	TTAA	1 cut(s)	1227
SatI	GCNGC	9 cut(s)	93, 108, 358, 1197, 1322, 1425, 1428, 1524, 1930
Sau96I	GGNCC	7 cut(s)	113, 133, 369, 827, 950, 1790, 1791
ScaI	AGTACT	1 cut(s)	1287
SchI	GAGTC	2 cut(s)	156, 1489
ScrFI	CCNGG	7 cut(s)	6, 638, 757, 783, 1002, 1344, 1640
SduI	GDGCHC	6 cut(s)	80, 460, 808, 943, 1794, 1969
SfaNI	GCATC	3 cut(s)	1074, 1657, 1688
SfoI	GGCGCC	1 cut(s)	1630
Sfr274I	CTCGAG	1 cut(s)	1527
SinI	GGWCC	5 cut(s)	113, 133, 369, 827, 950
SlaI	CTCGAG	1 cut(s)	1527
SmiMI	CAYNNNNRTG	1 cut(s)	1553
SmlI	CTYRAG	3 cut(s)	797, 1335, 1527
SmoI	CTYRAG	3 cut(s)	797, 1335, 1527
Sse9I	AATT	4 cut(s)	687, 1431, 1478, 1500
SsiI	CCGC	7 cut(s)	15, 108, 504, 808, 1411, 1625, 1930
SspDI	GGCGCC	1 cut(s)	1628
SspMI	CTAG	2 cut(s)	855, 1742
SstI	GAGCTC	1 cut(s)	943
StyD4I	CCNGG	7 cut(s)	4, 636, 755, 781, 1000, 1342, 1638
StyI	CCWWGG	5 cut(s)	59, 87, 152, 765, 1995
TaaI	ACNGT	8 cut(s)	273, 421, 573, 699, 835, 957, 1275, 2079
TaiI	ACGT	5 cut(s)	297, 322, 1295, 1780, 2095
TaqI	TCGA	3 cut(s)	118, 1349, 1528
TaqII	GACCGA	1 cut(s)	987
TasI	AATT	4 cut(s)	687, 1431, 1478, 1500
TatI	WGTACW	1 cut(s)	1285
TauI	GCSGC	2 cut(s)	110, 1932
TfiI	GAWTC	5 cut(s)	587, 610, 1035, 1474, 1832
Tru1I	TTAA	1 cut(s)	1227
Tru9I	TTAA	1 cut(s)	1227
TscAI	CASTG	7 cut(s)	80, 103, 426, 894, 1639, 1801, 2107
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	7 cut(s)	92, 357, 1196, 1321, 1424, 1427, 1523
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	6 cut(s)	552, 570, 1043, 1260, 1424, 1778
TspGWI	ACGGA	1 cut(s)	948
TspRI	CASTG	7 cut(s)	80, 103, 426, 894, 1639, 1801, 2107
Tth111I	GACNNNGTC	3 cut(s)	69, 318, 2077
Van91I	CCANNNNNTGG	2 cut(s)	153, 2012
VneI	GTGCAC	2 cut(s)	76, 456
VpaK11BI	GGWCC	5 cut(s)	113, 133, 369, 827, 950
XhoI	CTCGAG	1 cut(s)	1527
XmiI	GTMKAC	1 cut(s)	1160
XmnI	GAANNNNTTC	2 cut(s)	1769, 1831
XspI	CTAG	2 cut(s)	855, 1742
ZraI	GACGTC	1 cut(s)	1293
ZrmI	AGTACT	1 cut(s)	1287
Zsp2I	ATGCAT	1 cut(s)	1681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.