Rh5DG348900

Outer envelope pore protein 16

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
47821368 .. 47876435
55068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG348900.1

Sequence Viewer

Length: 303 bp
ATGGCTTCCACGATTGTCTCTCCAAGCAGTTCGTCCTCGTCGAGGCCGCCATCGTCATCGTCACCAGTGGATGCTGCTATTGGCGGCATCATGAGTGGAACCATCGGAGCTGCCAAAGTTGTTGCAGAGGATTCTTACTATGCCGTCAAAAGGGGGAGCGTTTCAAGTCAAGACTTTGAGTACACTTCTGATTCTGGCGATCAACCACCTTTACTTTCGCTTGACTTGTTAGGGCTGTGGCTTGCCTTTTGGAAGCGTGTGCCATTTATGACTTTCATAATAAGTATGCATCATATAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

10.56

Weight (kDa)

5.42

Isoelectric Point (pI)

88.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 84
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 42, 150
AgsI TTSAA 1 cut(s) 165
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 74, 110
AsuHPI GGTGA 1 cut(s) 54
BbvI GCAGC 2 cut(s) 61, 97
BccI CCATC 2 cut(s) 58, 110
BceAI ACGGC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 22
BisI GCNGC 4 cut(s) 47, 75, 85, 111
BlsI GCNGC 4 cut(s) 48, 76, 86, 112
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 3 cut(s) 61, 96, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 150
Bse1I ACTGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 42, 150
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 61, 97
BshFI GGCC 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 42, 150
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 2 cut(s) 47, 84
BspANI GGCC 1 cut(s) 46
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 65
BssMI GATC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 243
BstENI CCTNNNNNAGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 61, 97
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 90
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 91
CviJI RGCY 5 cut(s) 5, 46, 110, 235, 241
CviKI_1 RGCY 5 cut(s) 5, 46, 110, 235, 241
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 291
FaeI CATG 1 cut(s) 94
FaiI YATR 8 cut(s) 92, 141, 269, 278, 287, 294, 296, 301
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 47, 75, 85, 111
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 4 cut(s) 47, 75, 85, 111
GluI GCNGC 4 cut(s) 47, 75, 85, 111
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 1 cut(s) 94
HinfI GANTC 2 cut(s) 131, 191
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 107, 190
Hpy188III TCNNGA 2 cut(s) 91, 170
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 125, 289
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 107, 156
LpnPI CCDG 2 cut(s) 78, 180
Lsp1109I GCAGC 2 cut(s) 61, 97
LweI GCATC 3 cut(s) 61, 96, 298
MaeIII GTNAC 1 cut(s) 60
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MnlI CCTC 3 cut(s) 36, 46, 121
Mph1103I ATGCAT 1 cut(s) 291
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 291
PagI TCATGA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 2 cut(s) 131, 191
PkrI GCNGC 4 cut(s) 48, 76, 86, 112
PspN4I GGNNCC 1 cut(s) 100
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SatI GCNGC 4 cut(s) 47, 75, 85, 111
Sau3AI GATC 1 cut(s) 199
SetI ASST 2 cut(s) 112, 211
SfaNI GCATC 3 cut(s) 61, 96, 298
SsiI CCGC 2 cut(s) 47, 84
TaqI TCGA 1 cut(s) 41
TatI WGTACW 1 cut(s) 180
TauI GCSGC 2 cut(s) 49, 87
TfiI GAWTC 2 cut(s) 131, 191
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 2 cut(s) 74, 110
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.