Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Forward (+)

23998249 .. 24002635

Gene Structure 4387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTGCCACTGCAACTGCCTCTGCTGGTCCTCGATATGCTCCAGAAGAACCATGGAAAGGATTGGTTGATTGTAAAACTGGGTATCTTTACTTTTGGAACCCTGAGACCAATGTGACTCAATATGATAGGCCTACAAGCTCAGCTCCTCCATCAAAGGCTTCTTCTGCACAGTATTTAAGTTCTTCAGTTCAAGGAGATGATAGGTATGGGAGGGGCAGCAATGGTGGATCAAAATTTGAGGCAGGACTAAGGAATGTGCAGAGTTCAAGAAGTGCACCAGTTTCTTCTAAGAATGGTCCAAGTGGGTCAGTTAGTGCACATGGAGTATCTGTTATTAGAGGAAATGGACCATCAAACACTGGAAGTGTTTTGTCTGCTGAGGCTTATTGTCGCCAGTATGAAATAACTGTTATTGGTGATAATGTGCCTCCACCGTTTACTTCTTTTGAAGCTACGAGCTTCCCGTCTGAAATTCTTAGAGATATCAGAGATGCAATTCACCAACCCAGAAACATCATGAACCACCAGTGGCCCGTAGAAACCCAACTAAATTTTGAATGTTATGGGTATGAATGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

194

Amino Acids

21.04

Weight (kDa)

5.91

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	3 cut(s)	236, 474, 553
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	194, 270, 452, 560
AluBI	AGCT	4 cut(s)	141, 146, 455, 462
AluI	AGCT	4 cut(s)	141, 146, 455, 462
Alw21I	GWGCWC	2 cut(s)	280, 322
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	2 cut(s)	276, 318
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	2 cut(s)	131, 533
ApaLI	GTGCAC	2 cut(s)	276, 318
ApeKI	GCWGC	2 cut(s)	5, 219
ApoI	RAATTY	3 cut(s)	236, 474, 553
AspS9I	GGNCC	4 cut(s)	29, 299, 350, 534
AsuHPI	GGTGA	2 cut(s)	431, 494
AvaII	GGWCC	3 cut(s)	29, 299, 350
BaeGI	GKGCMC	2 cut(s)	280, 322
Bbv12I	GWGCWC	2 cut(s)	280, 322
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	2 cut(s)	160, 361
BcoDI	GTCTC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	6, 220
BlpI	GCTNAGC	1 cut(s)	142
BlsI	GCNGC	2 cut(s)	7, 221
Bme18I	GGWCC	3 cut(s)	29, 299, 350
BmgT120I	GGNCC	4 cut(s)	29, 299, 350, 534
BmiI	GGNNCC	1 cut(s)	101
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	5 cut(s)	85, 281, 367, 397, 529
Bse3DI	GCAATG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	96, 156, 372
BseNI	ACTGG	5 cut(s)	85, 281, 367, 397, 529
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	2 cut(s)	280, 322
BseXI	GCAGC	1 cut(s)	231
BsgI	GTGCAG	2 cut(s)	153, 281
BshFI	GGCC	2 cut(s)	133, 535
BsiHKAI	GWGCWC	2 cut(s)	280, 322
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	133, 535
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	280, 322
Bsp143I	GATC	1 cut(s)	230
Bsp1720I	GCTNAGC	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	2 cut(s)	133, 535
BspCNI	CTCAG	3 cut(s)	97, 155, 373
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	5 cut(s)	85, 281, 367, 397, 529
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	3 cut(s)	174, 412, 438
BstDEI	CTNAG	6 cut(s)	105, 142, 251, 291, 381, 479
BstDSI	CCRYGG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 167
BstSLI	GKGCMC	2 cut(s)	280, 322
BstV1I	GCAGC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	133, 535
BtgI	CCRYGG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	3 cut(s)	9, 360, 536
CciI	TCATGA	1 cut(s)	519
Cfr13I	GGNCC	4 cut(s)	29, 299, 350, 534
CviAII	CATG	3 cut(s)	54, 323, 520
CviJI	RGCY	9 cut(s)	5, 133, 141, 146, 161, 386, 455, 462, 535
CviKI_1	RGCY	9 cut(s)	5, 133, 141, 146, 161, 386, 455, 462, 535
DdeI	CTNAG	6 cut(s)	105, 142, 251, 291, 381, 479
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	3 cut(s)	29, 299, 350
Eco57I	CTGAAG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	57, 326, 523
FaiI	YATR	9 cut(s)	39, 55, 126, 210, 324, 402, 521, 567, 573
FatI	CATG	3 cut(s)	53, 322, 519
Fnu4HI	GCNGC	2 cut(s)	6, 220
Fsp4HI	GCNGC	2 cut(s)	6, 220
GluI	GCNGC	2 cut(s)	6, 220
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	133, 535
Hin1II	CATG	3 cut(s)	57, 326, 523
HinfI	GANTC	1 cut(s)	118
HphI	GGTGA	2 cut(s)	431, 494
Hpy166II	GTNNAC	3 cut(s)	278, 320, 441
Hpy188I	TCNGA	2 cut(s)	472, 491
Hpy188III	TCNNGA	3 cut(s)	44, 270, 520
Hpy8I	GTNNAC	3 cut(s)	278, 320, 441
HpyCH4III	ACNGT	3 cut(s)	174, 412, 438
HpyCH4V	TGCA	6 cut(s)	14, 170, 262, 278, 320, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 167
HpyF3I	CTNAG	6 cut(s)	105, 142, 251, 291, 381, 479
Hsp92II	CATG	3 cut(s)	57, 326, 523
Kzo9I	GATC	1 cut(s)	230
LmnI	GCTCC	2 cut(s)	46, 151
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	484
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	4 cut(s)	59, 156, 177, 279
MhlI	GDGCHC	2 cut(s)	280, 322
MluCI	AATT	4 cut(s)	236, 474, 498, 553
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	8 cut(s)	31, 42, 159, 207, 235, 335, 376, 441
MseI	TTAA	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	11, 167
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	3 cut(s)	57, 326, 523
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	115
PagI	TCATGA	1 cut(s)	519
PceI	AGGCCT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	7, 221
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	4 cut(s)	29, 299, 350, 534
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	6, 220
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	4 cut(s)	29, 299, 350, 534
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	280, 322
SetI	ASST	5 cut(s)	143, 148, 209, 457, 464
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	3 cut(s)	29, 299, 350
Sse9I	AATT	4 cut(s)	236, 474, 498, 553
SseBI	AGGCCT	1 cut(s)	133
StuI	AGGCCT	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	3 cut(s)	174, 412, 438
TaqI	TCGA	1 cut(s)	34
TasI	AATT	4 cut(s)	236, 474, 498, 553
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	3 cut(s)	16, 367, 536
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	5, 219
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	417, 536
TspRI	CASTG	3 cut(s)	16, 367, 536
VneI	GTGCAC	2 cut(s)	276, 318
VpaK11BI	GGWCC	3 cut(s)	29, 299, 350
XapI	RAATTY	3 cut(s)	236, 474, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.