Rh1CG060200

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002971
Physical Location & Seq
Reverse (-)
11956944 .. 11959824
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG060200.1

Sequence Viewer

Length: 480 bp
ATGGCTTCCACGATTGTCTCTCCAAGCAGTTCGTCCTCGTCGAGGCCGCCATCGTCATCGTCACCAGTGGATGCTGCTATTGGCGGCATCATGATCGGAGCTGCCAAAGTTGTTGCAGAGGATTCTTACTATGCCGTCAAAAGGGGGAGCGTTTCAAGTCAGGACTTTGAGTACACTTTGAAGAGCATGTGTAAAGAAGGTGCATGTTATGTGGTTTTGTTGTGCTGCCAATTGAAATACTACCTCATATCCAGAAGTGGTTTGGTTTCTACTTTGTTATTAAGGGTACCAGAAAACTCTAAGTTTTACTTGATGGTGTACTTTGGTATGGAGCATCATGTACAAACTTGTCATGGTTATGTGTCCGTTACAGTGTTGGGAGATCAGGAGAAACTAGCTATTGTCACTTATCCTGATATAACCAGTCTTGGTTCTACTTGGCTAATACTATTGCACATTTCTTTCCCTCATAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

159

Amino Acids

17.22

Weight (kDa)

6.94

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 111 - 141 9e-06 Ndr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 286
AciI CCGC 2 cut(s) 47, 84
AfaI GTAC 4 cut(s) 173, 288, 320, 342
AfiI CCNNNNNNNGG 3 cut(s) 42, 141, 473
AgsI TTSAA 3 cut(s) 156, 181, 235
AluBI AGCT 2 cut(s) 101, 398
AluI AGCT 2 cut(s) 101, 398
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 3 cut(s) 74, 101, 225
Asp718I GGTACC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 286
BbvI GCAGC 3 cut(s) 61, 88, 212
BccI CCATC 2 cut(s) 58, 307
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 395
BisI GCNGC 5 cut(s) 47, 75, 85, 102, 226
BlsI GCNGC 5 cut(s) 48, 76, 86, 103, 227
BmiI GGNNCC 1 cut(s) 288
BmsI GCATC 3 cut(s) 61, 96, 343
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 141, 473
Bse1I ACTGG 2 cut(s) 65, 423
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 3 cut(s) 42, 141, 473
BseNI ACTGG 2 cut(s) 65, 423
BseXI GCAGC 3 cut(s) 61, 88, 212
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 286
BslI CCNNNNNNNGG 3 cut(s) 42, 141, 473
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 93, 382
BspACI CCGC 2 cut(s) 47, 84
BspANI GGCC 1 cut(s) 46
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 288
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 286
BsrGI TGTACA 1 cut(s) 340
BsrI ACTGG 2 cut(s) 65, 423
BssMI GATC 2 cut(s) 93, 382
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 96, 385
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 93, 382
BstNSI RCATGY 2 cut(s) 190, 207
BstV1I GCAGC 3 cut(s) 61, 88, 212
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 72, 378
CciI TCATGA 1 cut(s) 90
Csp6I GTAC 4 cut(s) 172, 287, 319, 341
CviAII CATG 5 cut(s) 91, 187, 204, 338, 353
CviJI RGCY 5 cut(s) 5, 46, 101, 398, 442
CviKI_1 RGCY 5 cut(s) 5, 46, 101, 398, 442
CviQI GTAC 4 cut(s) 172, 287, 319, 341
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 95, 384
DpnII GATC 2 cut(s) 93, 382
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 40
FaeI CATG 5 cut(s) 94, 190, 207, 341, 356
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 5 cut(s) 90, 186, 203, 337, 352
Fnu4HI GCNGC 5 cut(s) 47, 75, 85, 102, 226
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 5 cut(s) 47, 75, 85, 102, 226
FspBI CTAG 1 cut(s) 395
GluI GCNGC 5 cut(s) 47, 75, 85, 102, 226
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 5 cut(s) 94, 190, 207, 341, 356
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 174, 319
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 5 cut(s) 91, 161, 252, 386, 413
Hpy8I GTNNAC 2 cut(s) 174, 319
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 116, 203, 454
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 5 cut(s) 94, 190, 207, 341, 356
KpnI GGTACC 1 cut(s) 290
Kzo9I GATC 2 cut(s) 93, 382
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 3 cut(s) 98, 147, 331
LpnPI CCDG 7 cut(s) 78, 146, 265, 303, 371, 426, 436
Lsp1109I GCAGC 3 cut(s) 61, 88, 212
LweI GCATC 3 cut(s) 61, 96, 343
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 3 cut(s) 60, 367, 403
MalI GATC 2 cut(s) 95, 384
MboI GATC 2 cut(s) 93, 382
MboII GAAGA 1 cut(s) 193
MfeI CAATTG 1 cut(s) 230
MluCI AATT 1 cut(s) 230
MnlI CCTC 5 cut(s) 36, 46, 112, 254, 477
MseI TTAA 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 357
MunI CAATTG 1 cut(s) 230
NdeII GATC 2 cut(s) 93, 382
NlaIII CATG 5 cut(s) 94, 190, 207, 341, 356
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 60, 403
NspI RCATGY 2 cut(s) 190, 207
PagI TCATGA 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 5 cut(s) 48, 76, 86, 103, 227
PspN4I GGNNCC 1 cut(s) 288
RsaI GTAC 4 cut(s) 173, 288, 320, 342
RsaNI GTAC 4 cut(s) 172, 287, 319, 341
RseI CAYNNNNRTG 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 5 cut(s) 47, 75, 85, 102, 226
Sau3AI GATC 2 cut(s) 93, 382
SetI ASST 4 cut(s) 103, 202, 246, 400
SfaNI GCATC 3 cut(s) 61, 96, 343
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 1 cut(s) 230
SsiI CCGC 2 cut(s) 47, 84
SspMI CTAG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 373
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 230
TatI WGTACW 3 cut(s) 171, 318, 340
TauI GCSGC 2 cut(s) 49, 87
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 2 cut(s) 72, 378
TseFI GTSAC 2 cut(s) 60, 403
TseI GCWGC 3 cut(s) 74, 101, 225
Tsp45I GTSAC 2 cut(s) 60, 403
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 2 cut(s) 72, 378
XagI CCTNNNNNAGG 1 cut(s) 40
XceI RCATGY 2 cut(s) 190, 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.