Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Forward (+)

3483077 .. 3486200

Gene Structure 3124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026510

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGCCGTCAGGTTCGATTTCCTGTCTCCGTGCTCTCCTAGATCTCCTAGATCTGAATATATTATCAGCTGTTTGTAGTCATGAAGTTGCTGATAACTCTGGGGATAACATTTTAATTGCCATGGCTGCCACTGCAACTGCCTCTGCTGGTCCTCGATATGCTCCAGAAGAACCATGGAAAGGATTGGTTGATTGTAAAACTGGGTATCTTTACTTTTGGAACCCTGAGACTAATGTGACTCAATATGATAGGCCTACAAGCTCAGCTCCTCCATCAAAGGCTTCTTCTGCACAGTATTTAAGACAATGTCGTGATGAGGGAGATGATAGGTATGGGAGGGGCAGCAATGGTGGATCAAAATTTGAGGCAGGACTGAGGAATGTGCAGAGTTCAAGAAGTGCACCAGTTTCTTCTAACAATGGTTCAAGTGGGTCAGTTAGTGCACATGGAGTATCTGTTATTAGAGGAAATGGACCATCAAACACTGGAAGTGGTTTGTCTGCTGAGGCTTATTGTCGCCAGTATGAAATAACTGTTATTGGTGATAATGTGCCCCCACCGTTTACTTCTTTTGAAGCTACGACCTTCCCGTCTGAAATTCTTAGAGAGGAGCATCATGTACAAACTTGTCATGGTTATGTGTCCGTTGCCGTGTTGGGAGATCAGGACAAACCAGCTCTTGTCACTTATCCTGATGTAGCTTTAAATAATGTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

241

Amino Acids

25.42

Weight (kDa)

5.06

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	205 - 238	3.8e-07	Ndr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	2 cut(s)	362, 600
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	396, 429, 578
AluBI	AGCT	6 cut(s)	71, 264, 269, 581, 680, 704
AluI	AGCT	6 cut(s)	71, 264, 269, 581, 680, 704
Alw21I	GWGCWC	3 cut(s)	37, 406, 448
Alw26I	GTCTC	2 cut(s)	32, 224
Alw44I	GTGCAC	2 cut(s)	402, 444
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	254
ApaLI	GTGCAC	2 cut(s)	402, 444
ApeKI	GCWGC	2 cut(s)	128, 345
ApoI	RAATTY	2 cut(s)	362, 600
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	152, 476
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	152, 476
BaeGI	GKGCMC	3 cut(s)	406, 448, 558
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	3 cut(s)	37, 406, 448
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	115, 357
BccI	CCATC	2 cut(s)	283, 487
BceAI	ACGGC	1 cut(s)	638
BcoDI	GTCTC	2 cut(s)	32, 224
BfaI	CTAG	2 cut(s)	41, 50
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	2 cut(s)	43, 52
BisI	GCNGC	2 cut(s)	129, 346
BlpI	GCTNAGC	1 cut(s)	265
BlsI	GCNGC	2 cut(s)	130, 347
Bme18I	GGWCC	2 cut(s)	152, 476
BmgT120I	GGNCC	2 cut(s)	152, 476
BmiI	GGNNCC	2 cut(s)	6, 224
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	507
Bpu1102I	GCTNAGC	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	123, 176
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	4 cut(s)	208, 407, 493, 523
Bse3DI	GCAATG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	123, 176
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	4 cut(s)	219, 279, 368, 498
BseNI	ACTGG	4 cut(s)	208, 407, 493, 523
BseRI	GAGGAG	2 cut(s)	261, 626
BseSI	GKGCMC	3 cut(s)	406, 448, 558
BseXI	GCAGC	2 cut(s)	115, 357
BsgI	GTGCAG	2 cut(s)	276, 407
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	3 cut(s)	37, 406, 448
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	2 cut(s)	32, 224
BsnI	GGCC	1 cut(s)	256
Bsp1286I	GDGCHC	4 cut(s)	37, 406, 448, 558
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	43, 52, 356, 664
Bsp1720I	GCTNAGC	1 cut(s)	265
Bsp19I	CCATGG	2 cut(s)	123, 176
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	4 cut(s)	220, 278, 369, 499
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	6, 224
BspPI	GGATC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	4 cut(s)	208, 407, 493, 523
BssECI	CCNNGG	2 cut(s)	123, 176
BssMI	GATC	4 cut(s)	43, 52, 356, 664
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	123, 176
Bst4CI	ACNGT	3 cut(s)	297, 538, 564
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	622
BstDEI	CTNAG	5 cut(s)	228, 265, 377, 507, 605
BstDSI	CCRYGG	2 cut(s)	123, 176
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	46, 55, 359, 667
BstMAI	GTCTC	2 cut(s)	32, 224
BstMBI	GATC	4 cut(s)	43, 52, 356, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 134, 290
BstSLI	GKGCMC	3 cut(s)	406, 448, 558
BstV1I	GCAGC	2 cut(s)	115, 357
BstX2I	RGATCY	2 cut(s)	43, 52
BstYI	RGATCY	2 cut(s)	43, 52
BsuRI	GGCC	1 cut(s)	256
BtgI	CCRYGG	2 cut(s)	123, 176
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 486
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	152, 476
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	6 cut(s)	83, 124, 177, 449, 620, 635
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	5 cut(s)	228, 265, 377, 507, 605
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	45, 54, 358, 666
DpnII	GATC	4 cut(s)	43, 52, 356, 664
DraI	TTTAAA	1 cut(s)	708
DrdI	GACNNNNNNGTC	1 cut(s)	592
DseDI	GACNNNNNNGTC	1 cut(s)	592
Eco130I	CCWWGG	2 cut(s)	123, 176
Eco147I	AGGCCT	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	152, 476
EcoT14I	CCWWGG	2 cut(s)	123, 176
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	123, 176
FaeI	CATG	6 cut(s)	86, 127, 180, 452, 623, 638
FatI	CATG	6 cut(s)	82, 123, 176, 448, 619, 634
Fnu4HI	GCNGC	2 cut(s)	129, 346
Fsp4HI	GCNGC	2 cut(s)	129, 346
FspBI	CTAG	2 cut(s)	41, 50
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	129, 346
GsuI	CTGGAG	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	86, 127, 180, 452, 623, 638
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	404, 446, 567
Hpy188I	TCNGA	3 cut(s)	57, 598, 722
Hpy188III	TCNNGA	6 cut(s)	83, 167, 314, 396, 668, 695
Hpy8I	GTNNAC	3 cut(s)	404, 446, 567
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	3 cut(s)	297, 538, 564
HpyCH4V	TGCA	5 cut(s)	137, 293, 388, 404, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 134, 290
HpyF3I	CTNAG	5 cut(s)	228, 265, 377, 507, 605
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	86, 127, 180, 452, 623, 638
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	43, 52, 356, 664
LmnI	GCTCC	3 cut(s)	169, 274, 613
Lsp1109I	GCAGC	2 cut(s)	115, 357
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	41, 50
MaeIII	GTNAC	2 cut(s)	238, 685
MalI	GATC	4 cut(s)	45, 54, 358, 666
MboI	GATC	4 cut(s)	43, 52, 356, 664
MboII	GAAGA	3 cut(s)	182, 279, 405
MflI	RGATCY	2 cut(s)	43, 52
MhlI	GDGCHC	4 cut(s)	37, 406, 448, 558
MluCI	AATT	3 cut(s)	117, 362, 600
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	235
MseI	TTAA	3 cut(s)	116, 302, 707
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	128, 134, 290
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	2 cut(s)	123, 176
NdeII	GATC	4 cut(s)	43, 52, 356, 664
NlaIII	CATG	6 cut(s)	86, 127, 180, 452, 623, 638
NlaIV	GGNNCC	2 cut(s)	6, 224
NmuCI	GTSAC	2 cut(s)	238, 685
PagI	TCATGA	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PflFI	GACNNNGTC	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	130, 347
PleI	GAGTC	1 cut(s)	235
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	6, 224
PspPI	GGNCC	2 cut(s)	152, 476
PsuI	RGATCY	2 cut(s)	43, 52
PsyI	GACNNNGTC	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
RseI	CAYNNNNRTG	1 cut(s)	639
SaqAI	TTAA	3 cut(s)	116, 302, 707
SatI	GCNGC	2 cut(s)	129, 346
Sau3AI	GATC	4 cut(s)	43, 52, 356, 664
Sau96I	GGNCC	2 cut(s)	152, 476
SchI	GAGTC	1 cut(s)	235
SduI	GDGCHC	4 cut(s)	37, 406, 448, 558
SetI	ASST	9 cut(s)	16, 73, 266, 271, 335, 583, 590, 682, 706
SfaNI	GCATC	1 cut(s)	625
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	152, 476
SmiMI	CAYNNNNRTG	1 cut(s)	639
Sse9I	AATT	3 cut(s)	117, 362, 600
SseBI	AGGCCT	1 cut(s)	256
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	41, 50
StuI	AGGCCT	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	123, 176
TaaI	ACNGT	3 cut(s)	297, 538, 564
TaqI	TCGA	2 cut(s)	17, 157
TasI	AATT	3 cut(s)	117, 362, 600
TatI	WGTACW	1 cut(s)	622
Tru1I	TTAA	3 cut(s)	116, 302, 707
Tru9I	TTAA	3 cut(s)	116, 302, 707
TscAI	CASTG	2 cut(s)	139, 493
TseFI	GTSAC	2 cut(s)	238, 685
TseI	GCWGC	2 cut(s)	128, 345
Tsp45I	GTSAC	2 cut(s)	238, 685
TspDTI	ATGAA	2 cut(s)	99, 543
TspGWI	ACGGA	2 cut(s)	20, 637
TspRI	CASTG	2 cut(s)	139, 493
Tth111I	GACNNNGTC	1 cut(s)	309
VneI	GTGCAC	2 cut(s)	402, 444
VpaK11BI	GGWCC	2 cut(s)	152, 476
XapI	RAATTY	2 cut(s)	362, 600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XspI	CTAG	2 cut(s)	41, 50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.