Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Forward (+)

88885150 .. 88891937

Gene Structure 6788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG663200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGGGGTTGCTTCTTCTGCCATTCAACTCTTCTATAAGCCCAAAAAAAGAAAAAGAAAAAAAAGTTTCAGAAATGTTGAGGTGTGTACCTCTGCTTATAGGATGCTGGAATTTTGCCTTTTCCAGGTACAAAATGCTGGTTTTTCTGCCCCGACTCCAATTCAAGCTCAATCATGGCCGGTTGCTCTTCAAAGTAGAGACATTGTGGCCATTGCTAAAACGGGGTCAGGGAAGACCTTGGGGTACTTGCTTCCTGGATTTATGCATCTTAAGCGCGCCCGTAATAACTCTCAGATGGGTCCAACTGTGTTGGTGTTATCACCAACAAGGGAGCTGGCCACACAGATTCAAGATGAAGCAATGAAGTTTGGAAAGTCTTCAAGAATAGCTGTTGTGTGTTTGTATGGAGGAGCGCCAAAGGGTCCACAATTGAGAGATATTGACAGAGGAGCAGATGTTGTGGTTGCCACTCCTGGCCGCTTGAATGACATTCTAGAAATGAAGAGAATCAGTCTCCATCAAGTTTCTTACCTAGTGTTGGATGAGGCTGATCGTATGCTGGACATGGGTTTTGAACCTCAAATAAGGAAGATTGTGAAGGAGATACCTGCTCGCCGCCAGACCTTAATGTATACAGCAACATGGCCCAAGGAGGTTAGGAAGATTGCATCAGATCTACTGGTCAACTCTGTTCAGGTGAACATTGGCAATGTTGATGAACTTGTCGCGAATAAGTCGATCACACAGCATGTTGAAGTACTGGCGTCCATGGAGAAACACAGACGATTGGAACAGATATTGCGATCGCAAGAGCCAGGATCCAAGATAATTATATTTTGCTCAACCAAAAAGATGTGTGATCAACTTTCTCGCAACTTAACCCGCCAGTTTGGAGCTGCTGCAATTCATGGTGACAAATCTCAGACTGAGAGGGATCATGTCCTGAGTCAATTTCGCACAGGGAGGACTCCAGTTCTTGTAGCGACTGATGTTGCAGCTCGAGGATTGGATGTTAAGGACATAAGGGTGGTTATAAATTACGACTTCCCTACTGGAGTAGAGGATTATGTTCACAGGATTGGGAGAACTGGAAGGGCAGGTGCCACTGGGTTGGCTTACACATTCTTTGGTGATCAGGATGCAAAATATGCTGCAGAACTCATTAAAGTTTTGGAAGGAGCAAACCAGCGTGTACCCCCAGAAATTCGTGAGTTGGCTTCACGTGGTGGTGGGATGAACAGATTCAGACGTTGGGGCTCTGGGTCTGGAGGTCGTGATGGTGGCCGAAGTGATTCAAGCTACGGTGGAAGAGATGGTGGAAGGGGCGGTGGGTTTGGATCTTCTTTCTCTACTGGCAGATATGACCGTGGTCCAAATAATAGTTATGATGACAAGGGGTCTGCTTGGAGCAACAAAGGTTTTACTCGGGAGCGCAGTCGTAGTCCTGAAAGGTTTAACAAAGCTCCGCCAACAGCTGTTGGCTCCGGAGGTTGGAGTTTTCACAAAGCAATGATGGAACAACGGGGACGGTCATCACCGCCTCCAAATCGTGTTGAGAAGGGAGGAGTAGATGGTTTCCGTCCTTCTTTCTATGGACTGGAAGAAGCTGAGGAAGGCATGATACCACAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

545

Amino Acids

60.17

Weight (kDa)

9.84

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	52 - 221	3.3e-49	DEAD/DEAH box helicase
ResIII	PF04851	64 - 215	2.2e-08	Type III restriction enzyme, res subunit
Helicase_C	PF00271	259 - 367	3.2e-35	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1034
AarI	CACCTGC	1 cut(s)	1088
Acc36I	ACCTGC	2 cut(s)	616, 1088
AccB1I	GGYRCC	1 cut(s)	1100
AccI	GTMKAC	1 cut(s)	632
AccII	CGCG	2 cut(s)	276, 728
AccIII	TCCGGA	1 cut(s)	1484
AciI	CCGC	6 cut(s)	478, 616, 883, 1326, 1466, 1538
AclWI	GGATC	4 cut(s)	813, 826, 942, 1345
AcoI	YGGCCR	5 cut(s)	176, 207, 336, 475, 1282
AcsI	RAATTY	2 cut(s)	110, 1203
AcvI	CACGTG	1 cut(s)	1223
AcyI	GRCGYC	1 cut(s)	764
AdeI	CACNNNGTG	1 cut(s)	1226
AfaI	GTAC	5 cut(s)	88, 129, 245, 759, 1194
AfiI	CCNNNNNNNGG	3 cut(s)	124, 538, 1491
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	9 cut(s)	26, 164, 191, 350, 381, 484, 575, 755, 1296
AhdI	GACNNNNNGTC	1 cut(s)	1396
AjnI	CCWGG	4 cut(s)	123, 253, 472, 814
AluBI	AGCT	9 cut(s)	167, 334, 389, 896, 998, 1299, 1463, 1475, 1607
AluI	AGCT	9 cut(s)	167, 334, 389, 896, 998, 1299, 1463, 1475, 1607
Alw26I	GTCTC	2 cut(s)	192, 518
AlwI	GGATC	4 cut(s)	813, 826, 942, 1345
Ama87I	CYCGRG	2 cut(s)	999, 1425
Aor13HI	TCCGGA	1 cut(s)	1484
AoxI	GGCC	6 cut(s)	176, 207, 336, 475, 644, 1282
ApeKI	GCWGC	4 cut(s)	896, 899, 995, 1151
ApoI	RAATTY	2 cut(s)	110, 1203
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AsiSI	GCGATCGC	1 cut(s)	806
Asp700I	GAANNNNTTC	3 cut(s)	376, 1241, 1291
AspLEI	GCGC	4 cut(s)	276, 278, 415, 1434
AspS9I	GGNCC	4 cut(s)	299, 422, 645, 1370
AsuHPI	GGTGA	5 cut(s)	312, 709, 923, 1142, 1527
AvaI	CYCGRG	2 cut(s)	999, 1425
AvaII	GGWCC	3 cut(s)	299, 422, 1370
BalI	TGGCCA	2 cut(s)	209, 338
BamHI	GGATCC	1 cut(s)	818
BanI	GGYRCC	1 cut(s)	1100
BanII	GRGCYC	1 cut(s)	1259
BarI	GAAGNNNNNNTAC	2 cut(s)	1605, 1637
BbrPI	CACGTG	1 cut(s)	1223
BbsI	GAAGAC	2 cut(s)	239, 369
BbvCI	CCTCAGC	1 cut(s)	1608
BbvI	GCAGC	4 cut(s)	883, 886, 1007, 1138
BccI	CCATC	6 cut(s)	289, 525, 1271, 1307, 1507, 1565
BciT130I	CCWGG	4 cut(s)	125, 255, 474, 816
BclI	TGATCA	2 cut(s)	859, 1132
BcoDI	GTCTC	2 cut(s)	192, 518
BfaI	CTAG	2 cut(s)	494, 533
BfmI	CTRYAG	1 cut(s)	1152
BfoI	RGCGCY	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	269
BfuAI	ACCTGC	2 cut(s)	616, 1088
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	6 cut(s)	478, 616, 897, 900, 996, 1152
BlsI	GCNGC	6 cut(s)	479, 617, 898, 901, 997, 1153
BmcAI	AGTACT	1 cut(s)	759
Bme1390I	CCNGG	4 cut(s)	125, 255, 474, 816
Bme18I	GGWCC	3 cut(s)	299, 422, 1370
BmeRI	GACNNNNNGTC	1 cut(s)	1396
BmeT110I	CYCGRG	2 cut(s)	999, 1425
BmgT120I	GGNCC	4 cut(s)	299, 422, 645, 1370
BmiI	GGNNCC	5 cut(s)	300, 423, 820, 1102, 1483
BmrFI	CCNGG	4 cut(s)	125, 255, 474, 816
BmrI	ACTGGG	1 cut(s)	1116
BmsI	GCATC	4 cut(s)	93, 274, 677, 1129
BmuI	ACTGGG	1 cut(s)	1116
BoxI	GACNNNNGTC	1 cut(s)	1368
BpiI	GAAGAC	2 cut(s)	239, 369
BpmI	CTGGAG	3 cut(s)	954, 1074, 1287
Bpu10I	CCTNAGC	1 cut(s)	1608
BsaAI	YACGTR	1 cut(s)	1223
BsaHI	GRCGYC	1 cut(s)	764
BsaJI	CCNNGG	4 cut(s)	237, 648, 768, 1366
BsaWI	WCCGGW	1 cut(s)	1484
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 538, 1491
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	9 cut(s)	684, 765, 886, 971, 1057, 1093, 1111, 1357, 1602
Bse3DI	GCAATG	4 cut(s)	210, 366, 715, 1515
BseAI	TCCGGA	1 cut(s)	1484
BseBI	CCWGG	4 cut(s)	125, 255, 474, 816
BseDI	CCNNGG	4 cut(s)	237, 648, 768, 1366
BseGI	GGATG	5 cut(s)	108, 547, 1015, 1144, 1239
BseLI	CCNNNNNNNGG	3 cut(s)	124, 538, 1491
BseMI	GCAATG	4 cut(s)	210, 366, 715, 1515
BseMII	CTCAG	5 cut(s)	305, 918, 935, 935, 1599
BseNI	ACTGG	9 cut(s)	684, 765, 886, 971, 1057, 1093, 1111, 1357, 1602
BsePI	GCGCGC	1 cut(s)	274
BseRI	GAGGAG	3 cut(s)	423, 462, 1578
BseXI	GCAGC	4 cut(s)	883, 886, 1007, 1138
Bsh1236I	CGCG	2 cut(s)	276, 728
Bsh1285I	CGRYCG	1 cut(s)	806
BshFI	GGCC	6 cut(s)	178, 209, 338, 477, 646, 1284
BshNI	GGYRCC	1 cut(s)	1100
BsiEI	CGRYCG	1 cut(s)	806
BsiHKCI	CYCGRG	2 cut(s)	999, 1425
BsiSI	CCGG	2 cut(s)	179, 1485
BslFI	GGGAC	1 cut(s)	1539
BslI	CCNNNNNNNGG	3 cut(s)	124, 538, 1491
BsmAI	GTCTC	2 cut(s)	192, 518
BsmFI	GGGAC	1 cut(s)	1539
BsnI	GGCC	6 cut(s)	178, 209, 338, 477, 646, 1284
BsoBI	CYCGRG	2 cut(s)	999, 1425
Bsp1286I	GDGCHC	1 cut(s)	1259
Bsp13I	TCCGGA	1 cut(s)	1484
Bsp143I	GATC	9 cut(s)	550, 673, 738, 803, 818, 859, 934, 1132, 1337
Bsp19I	CCATGG	1 cut(s)	768
Bsp68I	TCGCGA	1 cut(s)	728
BspACI	CCGC	6 cut(s)	478, 616, 883, 1326, 1466, 1538
BspANI	GGCC	6 cut(s)	178, 209, 338, 477, 646, 1284
BspCNI	CTCAG	5 cut(s)	304, 919, 934, 936, 1600
BspEI	TCCGGA	1 cut(s)	1484
BspFNI	CGCG	2 cut(s)	276, 728
BspLI	GGNNCC	5 cut(s)	300, 423, 820, 1102, 1483
BspMAI	CTGCAG	1 cut(s)	1156
BspMI	ACCTGC	2 cut(s)	616, 1088
BspPI	GGATC	4 cut(s)	813, 826, 942, 1345
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	1100
BspTI	CTTAAG	1 cut(s)	269
BsrDI	GCAATG	4 cut(s)	210, 366, 715, 1515
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	9 cut(s)	684, 765, 886, 971, 1057, 1093, 1111, 1357, 1602
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	4 cut(s)	237, 648, 768, 1366
BssHII	GCGCGC	1 cut(s)	274
BssMI	GATC	9 cut(s)	550, 673, 738, 803, 818, 859, 934, 1132, 1337
BssNAI	GTATAC	1 cut(s)	633
BssNI	GRCGYC	1 cut(s)	764
BssT1I	CCWWGG	3 cut(s)	237, 648, 768
Bst1107I	GTATAC	1 cut(s)	633
Bst2UI	CCWGG	4 cut(s)	125, 255, 474, 816
Bst4CI	ACNGT	4 cut(s)	307, 1304, 1367, 1530
Bst6I	CTCTTC	4 cut(s)	35, 192, 497, 1303
BstACI	GRCGYC	1 cut(s)	764
BstAFI	CTTAAG	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	1148
BstBAI	YACGTR	1 cut(s)	1223
BstC8I	GCNNGC	3 cut(s)	276, 336, 613
BstDEI	CTNAG	5 cut(s)	291, 921, 927, 944, 1608
BstDSI	CCRYGG	2 cut(s)	768, 1366
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	5 cut(s)	108, 547, 1015, 1144, 1239
BstFNI	CGCG	2 cut(s)	276, 728
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	4 cut(s)	276, 278, 415, 1434
BstKTI	GATC	9 cut(s)	553, 676, 741, 806, 821, 862, 937, 1135, 1340
BstMAI	GTCTC	2 cut(s)	192, 518
BstMBI	GATC	9 cut(s)	550, 673, 738, 803, 818, 859, 934, 1132, 1337
BstMCI	CGRYCG	1 cut(s)	806
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 271, 1148
BstNI	CCWGG	4 cut(s)	125, 255, 474, 816
BstNSI	RCATGY	1 cut(s)	752
BstPAI	GACNNNNGTC	1 cut(s)	1368
BstSCI	CCNGG	4 cut(s)	123, 253, 472, 814
BstSFI	CTRYAG	1 cut(s)	1152
BstUI	CGCG	2 cut(s)	276, 728
BstV1I	GCAGC	4 cut(s)	883, 886, 1007, 1138
BstV2I	GAAGAC	2 cut(s)	239, 369
BstX2I	RGATCY	3 cut(s)	673, 818, 1337
BstXI	CCANNNNNNTGG	1 cut(s)	1111
BstYI	RGATCY	3 cut(s)	673, 818, 1337
BstZ17I	GTATAC	1 cut(s)	633
BsuRI	GGCC	6 cut(s)	178, 209, 338, 477, 646, 1284
BtgI	CCRYGG	2 cut(s)	768, 1366
BtsCI	GGATG	5 cut(s)	108, 547, 1015, 1144, 1239
BtsIMutI	CAGTG	1 cut(s)	1104
BtuMI	TCGCGA	1 cut(s)	728
BveI	ACCTGC	2 cut(s)	616, 1088
Cac8I	GCNNGC	3 cut(s)	276, 336, 613
CfoI	GCGC	4 cut(s)	276, 278, 415, 1434
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	4 cut(s)	299, 422, 645, 1370
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	5 cut(s)	87, 128, 244, 758, 1193
CviAII	CATG	8 cut(s)	174, 565, 642, 749, 769, 908, 938, 1618
CviQI	GTAC	5 cut(s)	87, 128, 244, 758, 1193
DdeI	CTNAG	5 cut(s)	291, 921, 927, 944, 1608
DpnI	GATC	9 cut(s)	552, 675, 740, 805, 820, 861, 936, 1134, 1339
DpnII	GATC	9 cut(s)	550, 673, 738, 803, 818, 859, 934, 1132, 1337
DraIII	CACNNNGTG	1 cut(s)	1226
DriI	GACNNNNNGTC	1 cut(s)	1396
EaeI	YGGCCR	5 cut(s)	176, 207, 336, 475, 1282
Eam1104I	CTCTTC	4 cut(s)	35, 192, 497, 1303
Eam1105I	GACNNNNNGTC	1 cut(s)	1396
EarI	CTCTTC	4 cut(s)	35, 192, 497, 1303
EciI	GGCGGA	1 cut(s)	1455
Eco130I	CCWWGG	3 cut(s)	237, 648, 768
Eco24I	GRGCYC	1 cut(s)	1259
Eco47I	GGWCC	3 cut(s)	299, 422, 1370
Eco72I	CACGTG	1 cut(s)	1223
Eco88I	CYCGRG	2 cut(s)	999, 1425
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRII	CCWGG	4 cut(s)	123, 253, 472, 814
EcoT14I	CCWWGG	3 cut(s)	237, 648, 768
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	1259
ErhI	CCWWGG	3 cut(s)	237, 648, 768
FaeI	CATG	8 cut(s)	177, 568, 645, 752, 772, 911, 941, 1621
FaqI	GGGAC	1 cut(s)	1539
FatI	CATG	8 cut(s)	173, 564, 641, 748, 768, 907, 937, 1617
FauI	CCCGC	1 cut(s)	890
FbaI	TGATCA	2 cut(s)	859, 1132
FblI	GTMKAC	1 cut(s)	632
Fnu4HI	GCNGC	6 cut(s)	478, 616, 897, 900, 996, 1152
FokI	GGATG	5 cut(s)	115, 554, 1022, 1151, 1246
FriOI	GRGCYC	1 cut(s)	1259
Fsp4HI	GCNGC	6 cut(s)	478, 616, 897, 900, 996, 1152
FspBI	CTAG	2 cut(s)	494, 533
GlaI	GCGC	4 cut(s)	275, 277, 414, 1433
GluI	GCNGC	6 cut(s)	478, 616, 897, 900, 996, 1152
GsuI	CTGGAG	3 cut(s)	954, 1074, 1287
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	6 cut(s)	178, 209, 338, 477, 646, 1284
HapII	CCGG	2 cut(s)	179, 1485
HgaI	GACGC	1 cut(s)	753
HhaI	GCGC	4 cut(s)	276, 278, 415, 1434
Hin1I	GRCGYC	1 cut(s)	764
Hin1II	CATG	8 cut(s)	177, 568, 645, 752, 772, 911, 941, 1621
Hin6I	GCGC	4 cut(s)	274, 276, 413, 1432
HinP1I	GCGC	4 cut(s)	274, 276, 413, 1432
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	7 cut(s)	154, 346, 507, 946, 967, 1242, 1292
HpaII	CCGG	2 cut(s)	179, 1485
HphI	GGTGA	5 cut(s)	312, 709, 923, 1142, 1527
Hpy166II	GTNNAC	7 cut(s)	87, 425, 633, 685, 700, 1072, 1193
Hpy188I	TCNGA	5 cut(s)	71, 294, 673, 924, 1247
Hpy8I	GTNNAC	7 cut(s)	87, 425, 633, 685, 700, 1072, 1193
HpyAV	CCTTC	7 cut(s)	592, 1086, 1169, 1314, 1552, 1593, 1607
HpyCH4III	ACNGT	4 cut(s)	307, 1304, 1367, 1530
HpyCH4IV	ACGT	2 cut(s)	1222, 1249
HpyCH4V	TGCA	6 cut(s)	265, 668, 902, 995, 1142, 1154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 271, 1148
HpyF3I	CTNAG	5 cut(s)	291, 921, 927, 944, 1608
HpySE526I	ACGT	2 cut(s)	1222, 1249
Hsp92I	GRCGYC	1 cut(s)	764
Hsp92II	CATG	8 cut(s)	177, 568, 645, 752, 772, 911, 941, 1621
HspAI	GCGC	4 cut(s)	274, 276, 413, 1432
Kpn2I	TCCGGA	1 cut(s)	1484
Ksp22I	TGATCA	2 cut(s)	859, 1132
Kzo9I	GATC	9 cut(s)	550, 673, 738, 803, 818, 859, 934, 1132, 1337
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	9 cut(s)	331, 410, 449, 893, 1178, 1407, 1429, 1468, 1487
Lsp1109I	GCAGC	4 cut(s)	883, 886, 1007, 1138
LweI	GCATC	4 cut(s)	93, 274, 677, 1129
MaeI	CTAG	2 cut(s)	494, 533
MaeII	ACGT	2 cut(s)	1222, 1249
MaeIII	GTNAC	1 cut(s)	911
MalI	GATC	9 cut(s)	552, 675, 740, 805, 820, 861, 936, 1134, 1339
MboI	GATC	9 cut(s)	550, 673, 738, 803, 818, 859, 934, 1132, 1337
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	3 cut(s)	673, 818, 1337
MhlI	GDGCHC	1 cut(s)	1259
MlsI	TGGCCA	2 cut(s)	209, 338
MluCI	AATT	8 cut(s)	110, 159, 428, 828, 903, 950, 1036, 1203
MluNI	TGGCCA	2 cut(s)	209, 338
MlyI	GAGTC	3 cut(s)	148, 955, 961
MmeI	TCCRAC	3 cut(s)	326, 519, 1472
Mox20I	TGGCCA	2 cut(s)	209, 338
Mph1103I	ATGCAT	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	1484
MroXI	GAANNNNTTC	3 cut(s)	376, 1241, 1291
MscI	TGGCCA	2 cut(s)	209, 338
MseI	TTAA	6 cut(s)	270, 626, 878, 1014, 1164, 1455
MslI	CAYNNNNRTG	1 cut(s)	1025
Msp20I	TGGCCA	2 cut(s)	209, 338
MspA1I	CMGCKG	1 cut(s)	1475
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	2 cut(s)	179, 1485
MspR9I	CCNGG	4 cut(s)	125, 255, 474, 816
MunI	CAATTG	1 cut(s)	428
MvaI	CCWGG	4 cut(s)	125, 255, 474, 816
MvnI	CGCG	2 cut(s)	276, 728
MwoI	GCNNNNNNNGC	3 cut(s)	17, 271, 1148
NcoI	CCATGG	1 cut(s)	768
NdeII	GATC	9 cut(s)	550, 673, 738, 803, 818, 859, 934, 1132, 1337
NlaIII	CATG	8 cut(s)	177, 568, 645, 752, 772, 911, 941, 1621
NlaIV	GGNNCC	5 cut(s)	300, 423, 820, 1102, 1483
NmuCI	GTSAC	1 cut(s)	911
NruI	TCGCGA	1 cut(s)	728
NsiI	ATGCAT	1 cut(s)	267
NspI	RCATGY	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	999
PaqCI	CACCTGC	1 cut(s)	1088
PauI	GCGCGC	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	192
PdmI	GAANNNNTTC	3 cut(s)	376, 1241, 1291
PfeI	GAWTC	4 cut(s)	346, 507, 1242, 1292
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	6 cut(s)	479, 617, 898, 901, 997, 1153
Ple19I	CGATCG	1 cut(s)	806
PleI	GAGTC	3 cut(s)	148, 954, 961
PmaCI	CACGTG	1 cut(s)	1223
PmlI	CACGTG	1 cut(s)	1223
PpsI	GAGTC	3 cut(s)	148, 954, 961
Ppu21I	YACGTR	1 cut(s)	1223
PshAI	GACNNNNGTC	1 cut(s)	1368
PsiI	TTATAA	1 cut(s)	1034
Psp6I	CCWGG	4 cut(s)	123, 253, 472, 814
PspCI	CACGTG	1 cut(s)	1223
PspGI	CCWGG	4 cut(s)	123, 253, 472, 814
PspN4I	GGNNCC	5 cut(s)	300, 423, 820, 1102, 1483
PspPI	GGNCC	4 cut(s)	299, 422, 645, 1370
PspXI	VCTCGAGB	1 cut(s)	999
PstI	CTGCAG	1 cut(s)	1156
PsuI	RGATCY	3 cut(s)	673, 818, 1337
PteI	GCGCGC	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	806
PvuII	CAGCTG	1 cut(s)	1475
RgaI	GCGATCGC	1 cut(s)	806
RruI	TCGCGA	1 cut(s)	728
RsaI	GTAC	5 cut(s)	88, 129, 245, 759, 1194
RsaNI	GTAC	5 cut(s)	87, 128, 244, 758, 1193
RseI	CAYNNNNRTG	1 cut(s)	1025
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	6 cut(s)	270, 626, 878, 1014, 1164, 1455
SatI	GCNGC	6 cut(s)	478, 616, 897, 900, 996, 1152
Sau3AI	GATC	9 cut(s)	550, 673, 738, 803, 818, 859, 934, 1132, 1337
Sau96I	GGNCC	4 cut(s)	299, 422, 645, 1370
ScaI	AGTACT	1 cut(s)	759
SchI	GAGTC	3 cut(s)	148, 955, 961
ScrFI	CCNGG	4 cut(s)	125, 255, 474, 816
SduI	GDGCHC	1 cut(s)	1259
SfaAI	GCGATCGC	1 cut(s)	806
SfaNI	GCATC	4 cut(s)	93, 274, 677, 1129
SfcI	CTRYAG	1 cut(s)	1152
Sfr274I	CTCGAG	1 cut(s)	999
SgfI	GCGATCGC	1 cut(s)	806
SinI	GGWCC	3 cut(s)	299, 422, 1370
SlaI	CTCGAG	1 cut(s)	999
SmiMI	CAYNNNNRTG	1 cut(s)	1025
SmlI	CTYRAG	2 cut(s)	269, 999
SmoI	CTYRAG	2 cut(s)	269, 999
Sse9I	AATT	8 cut(s)	110, 159, 428, 828, 903, 950, 1036, 1203
SsiI	CCGC	6 cut(s)	478, 616, 883, 1326, 1466, 1538
SspMI	CTAG	2 cut(s)	494, 533
StyD4I	CCNGG	4 cut(s)	123, 253, 472, 814
StyI	CCWWGG	3 cut(s)	237, 648, 768
TaaI	ACNGT	4 cut(s)	307, 1304, 1367, 1530
TaiI	ACGT	2 cut(s)	1225, 1252
TaqI	TCGA	2 cut(s)	737, 1000
TasI	AATT	8 cut(s)	110, 159, 428, 828, 903, 950, 1036, 1203
TatI	WGTACW	1 cut(s)	757
TauI	GCSGC	2 cut(s)	480, 618
TfiI	GAWTC	4 cut(s)	346, 507, 1242, 1292
Tru1I	TTAA	6 cut(s)	270, 626, 878, 1014, 1164, 1455
Tru9I	TTAA	6 cut(s)	270, 626, 878, 1014, 1164, 1455
TscAI	CASTG	1 cut(s)	1111
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	4 cut(s)	896, 899, 995, 1151
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	6 cut(s)	369, 377, 515, 732, 896, 1250
TspGWI	ACGGA	1 cut(s)	1568
TspRI	CASTG	1 cut(s)	1111
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	3 cut(s)	299, 422, 1370
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	2 cut(s)	110, 1203
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	999
XmiI	GTMKAC	1 cut(s)	632
XmnI	GAANNNNTTC	3 cut(s)	376, 1241, 1291
XspI	CTAG	2 cut(s)	494, 533
ZrmI	AGTACT	1 cut(s)	759
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.