Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8447803.1

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1016

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8447803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggctgccactgcaactgcctctgctggtcctcgatatgctccagaagacccaactctcccaaaaccatggaaaggattggttgatggtaaaactgggtatctttacttttggaaccccgagaccaatgtgactcaatatgataggcctacaggcacagctcctccatcaaaggcttcttctgcacagtatataagttcttcagttcaagttcaacaatcttcacaaggacaacgtcgtgatgagggagatgataggtatggcaggggcagcaatggtggatcaaaatttgaggcaggaccgaggaatgtacagagtgcaagaagtgcaccagtttcttctaacaatgggccaagtgggtcagttagtgcacatggaggatctgttattagaggaaatggaccatcagactctggaagtggtttgtctgctgaggcttattgtcgccggcatgaaataactgttatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

156

Amino Acids

16.28

Weight (kDa)

9.13

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	289, 388
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	209, 215
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	2 cut(s)	331, 373
Alw26I	GTCTC	1 cut(s)	116
Alw44I	GTGCAC	2 cut(s)	327, 369
AlwI	GGATC	2 cut(s)	289, 388
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	146, 350
ApaLI	GTGCAC	2 cut(s)	327, 369
ApeKI	GCWGC	2 cut(s)	5, 270
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	4 cut(s)	29, 299, 350, 401
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	3 cut(s)	29, 299, 401
BaeGI	GKGCMC	2 cut(s)	331, 373
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	331, 373
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	3 cut(s)	80, 175, 412
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	2 cut(s)	6, 271
BlsI	GCNGC	2 cut(s)	7, 272
Bme18I	GGWCC	3 cut(s)	29, 299, 401
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	4 cut(s)	29, 299, 350, 401
BmiI	GGNNCC	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	68, 302
BsaXI	ACNNNNNCTCC	4 cut(s)	148, 178, 369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	447
Bse1I	ACTGG	2 cut(s)	100, 332
Bse3DI	GCAATG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	68, 302
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	100, 332
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	2 cut(s)	331, 373
BseXI	GCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	148, 352
BsiHKAI	GWGCWC	2 cut(s)	331, 373
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	148, 352
Bso31I	GGTCTC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	331, 373
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	281, 380
Bsp19I	CCATGG	1 cut(s)	68
BspANI	GGCC	2 cut(s)	148, 352
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	289, 388
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	447
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	100, 332
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	2 cut(s)	68, 302
BssMI	GATC	2 cut(s)	281, 380
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	189, 463
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	284, 383
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	281, 380
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 182, 270, 326
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	2 cut(s)	331, 373
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	380
BstXI	CCANNNNNNTGG	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	148, 352
BtgI	CCRYGG	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	449
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	4 cut(s)	29, 299, 350, 401
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	3 cut(s)	69, 374, 452
CviJI	RGCY	6 cut(s)	5, 148, 161, 176, 352, 437
CviKI_1	RGCY	6 cut(s)	5, 148, 161, 176, 352, 437
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	283, 382
DpnII	GATC	2 cut(s)	281, 380
Eco130I	CCWWGG	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	3 cut(s)	29, 299, 401
Eco57I	CTGAAG	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	72, 377, 455
FaiI	YATR	8 cut(s)	39, 70, 141, 192, 194, 261, 375, 453
FatI	CATG	3 cut(s)	68, 373, 451
Fnu4HI	GCNGC	2 cut(s)	6, 271
Fsp4HI	GCNGC	2 cut(s)	6, 271
GluI	GCNGC	2 cut(s)	6, 271
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	148, 352
HapII	CCGG	1 cut(s)	448
Hin1II	CATG	3 cut(s)	72, 377, 455
HinfI	GANTC	2 cut(s)	133, 410
HpaII	CCGG	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	329, 371
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	3 cut(s)	44, 239, 414
Hpy8I	GTNNAC	2 cut(s)	329, 371
Hpy99I	CGWCG	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	189, 463
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	14, 185, 320, 329, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 182, 270, 326
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	3 cut(s)	72, 377, 455
KroI	GCCGGC	1 cut(s)	447
KroNI	GCCGGC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	281, 380
LmnI	GCTCC	2 cut(s)	46, 166
LpnPI	CCDG	9 cut(s)	12, 57, 81, 138, 250, 282, 345, 399, 461
Lsp1109I	GCAGC	1 cut(s)	282
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	283, 382
MboI	GATC	2 cut(s)	281, 380
MboII	GAAGA	5 cut(s)	59, 171, 192, 213, 330
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	331, 373
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	127, 404
MnlI	CCTC	9 cut(s)	31, 42, 174, 238, 286, 297, 371, 386, 427
MroNI	GCCGGC	1 cut(s)	447
MspI	CCGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	11, 182, 270, 326
NaeI	GCCGGC	1 cut(s)	449
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	281, 380
NgoMIV	GCCGGC	1 cut(s)	447
NlaIII	CATG	3 cut(s)	72, 377, 455
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	449
PflFI	GACNNNGTC	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	7, 272
PleI	GAGTC	2 cut(s)	127, 404
PpsI	GAGTC	2 cut(s)	127, 404
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	4 cut(s)	29, 299, 350, 401
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	380
PsyI	GACNNNGTC	1 cut(s)	234
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SatI	GCNGC	2 cut(s)	6, 271
Sau3AI	GATC	2 cut(s)	281, 380
Sau96I	GGNCC	4 cut(s)	29, 299, 350, 401
SchI	GAGTC	2 cut(s)	127, 404
SduI	GDGCHC	2 cut(s)	331, 373
SetI	ASST	3 cut(s)	163, 238, 260
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	3 cut(s)	29, 299, 401
Sse9I	AATT	1 cut(s)	287
SseBI	AGGCCT	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	189, 463
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	34
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	310
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	5, 270
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	468
TspRI	CASTG	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	234
VneI	GTGCAC	2 cut(s)	327, 369
VpaK11BI	GGWCC	3 cut(s)	29, 299, 401
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.