Rh7AG279200

nervous system development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002971
Physical Location & Seq
Forward (+)
29349146 .. 29350795
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG279200.1

Sequence Viewer

Length: 318 bp
ATGTTATGTGGTTTTGTTGTGCTGCCAATTGAAATACTACCTCATATCCAGGGTGATAATGTGCCCCCACCGTTTACTTCTTTTGAAGCTACGAGCTTCCCGTCTGAAATTCTTAGAGAGTCTCTTCTCCTTGGACTAAGTGACCCGAAAAGGTGGTTCAACTTTTTGGAGCATCATGTACAAACTTGTCATGGTTATGTGTCCGTTACCGTGTTGGGAGATCAGGAGAAACCAGCTATTGTCACTTATCCTGATATAACCAGTCTTGGTTCTACTTGGCTAATACTATTGCACATTTCTTTCCCTCATAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010817 GO:0032879 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

5.28

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 57 - 87 4.9e-07 Ndr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 108
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 3 cut(s) 32, 86, 160
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 3 cut(s) 89, 96, 236
AluI AGCT 3 cut(s) 89, 96, 236
Alw26I GTCTC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 126
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 49, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 49, 130
BseLI CCNNNNNNNGG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 49, 130
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 72, 211
Bst6I CTCTTC 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 113, 137
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 179
CviAII CATG 2 cut(s) 176, 191
CviJI RGCY 4 cut(s) 89, 96, 236, 280
CviKI_1 RGCY 4 cut(s) 89, 96, 236, 280
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 2 cut(s) 113, 137
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 179, 194
FaiI YATR 7 cut(s) 7, 45, 177, 192, 198, 257, 309
FatI CATG 2 cut(s) 175, 190
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 179, 194
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 224, 251
Hpy8I GTNNAC 1 cut(s) 75
HpyCH4III ACNGT 2 cut(s) 72, 211
HpyCH4V TGCA 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 113, 137
Hsp92II CATG 2 cut(s) 179, 194
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 6 cut(s) 35, 62, 209, 246, 264, 274
Lsp1109I GCAGC 1 cut(s) 9
LweI GCATC 1 cut(s) 181
MaeIII GTNAC 3 cut(s) 140, 205, 241
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 2 cut(s) 27, 108
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 2 cut(s) 51, 315
MslI CAYNNNNRTG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 50
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 179, 194
NmuCI GTSAC 2 cut(s) 140, 241
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 195
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 66
SetI ASST 5 cut(s) 43, 91, 98, 155, 238
SfaNI GCATC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 2 cut(s) 27, 108
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 72, 211
TasI AATT 2 cut(s) 27, 108
TatI WGTACW 1 cut(s) 178
TseFI GTSAC 2 cut(s) 140, 241
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 2 cut(s) 140, 241
TspGWI ACGGA 1 cut(s) 193
XapI RAATTY 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.