Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Reverse (-)

46497673 .. 46498421

Gene Structure 749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTGTCCCATTGTTTGGTGTAGTGCTTTATCAGCTGTAATCTGTTTCCTCGATATTATTTGTTGGTGCTTATGTGAGTTGTTCGTTCCTCAGTTTGTTCTAGAGGACCCAACCATCCTGAAACCATGGAGAGGATGGGATAGCATTTTAATTGCCATGGCTACCACTGCAACTGCCTCTGCTGGTCCTCGATATGCTCCAGAAGAACCATGGAAGGGATTGGTTGATTGTAAAACTGGGTATCTTTACTTTTGGAACCCTGAGACCAATGTGACTCAATATGATAGGCCTACAAGCTTAGCTCCTCCATCAAAGGGTTCTTCTGCACAGTATTTAAGTTCTTCAGTTCAAGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

119

Amino Acids

13.26

Weight (kDa)

4.65

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	4 cut(s)	15, 131, 215, 314
AgsI	TTSAA	2 cut(s)	350, 356
AluBI	AGCT	3 cut(s)	35, 297, 302
AluI	AGCT	3 cut(s)	35, 297, 302
Alw26I	GTCTC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	106, 185
AvaII	GGWCC	2 cut(s)	106, 185
BccI	CCATC	3 cut(s)	122, 129, 316
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	298
Bme18I	GGWCC	2 cut(s)	106, 185
BmgT120I	GGNCC	2 cut(s)	106, 185
BmiI	GGNNCC	2 cut(s)	108, 257
BmrI	ACTGGG	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	125, 156, 209
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 131, 215, 314
Bse1I	ACTGG	1 cut(s)	241
BseDI	CCNNGG	3 cut(s)	125, 156, 209
BseGI	GGATG	2 cut(s)	114, 140
BseLI	CCNNNNNNNGG	4 cut(s)	15, 131, 215, 314
BseMII	CTCAG	2 cut(s)	104, 252
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	289
BslI	CCNNNNNNNGG	4 cut(s)	15, 131, 215, 314
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	257
Bsp1720I	GCTNAGC	1 cut(s)	298
Bsp19I	CCATGG	3 cut(s)	125, 156, 209
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	103, 253
BspLI	GGNNCC	2 cut(s)	108, 257
BspTNI	GGTCTC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	125, 156, 209
BssT1I	CCWWGG	3 cut(s)	125, 156, 209
Bst4CI	ACNGT	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	90, 261, 298
BstDSI	CCRYGG	3 cut(s)	125, 156, 209
BstF5I	GGATG	2 cut(s)	114, 140
BstMAI	GTCTC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 167
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	3 cut(s)	125, 156, 209
BtsCI	GGATG	2 cut(s)	114, 140
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	106, 185
CviAII	CATG	3 cut(s)	126, 157, 210
CviJI	RGCY	5 cut(s)	35, 161, 289, 297, 302
CviKI_1	RGCY	5 cut(s)	35, 161, 289, 297, 302
DdeI	CTNAG	3 cut(s)	90, 261, 298
Eco130I	CCWWGG	3 cut(s)	125, 156, 209
Eco147I	AGGCCT	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	106, 185
Eco57I	CTGAAG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT14I	CCWWGG	3 cut(s)	125, 156, 209
ErhI	CCWWGG	3 cut(s)	125, 156, 209
FaeI	CATG	3 cut(s)	129, 160, 213
FaiI	YATR	6 cut(s)	73, 127, 158, 195, 211, 282
FatI	CATG	3 cut(s)	125, 156, 209
FokI	GGATG	2 cut(s)	101, 147
FspBI	CTAG	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	129, 160, 213
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	1 cut(s)	274
Hpy188III	TCNNGA	3 cut(s)	101, 118, 200
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	170, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 167
HpyF3I	CTNAG	3 cut(s)	90, 261, 298
Hsp92II	CATG	3 cut(s)	129, 160, 213
LmnI	GCTCC	2 cut(s)	202, 307
LpnPI	CCDG	5 cut(s)	131, 168, 213, 222, 273
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	271
MboII	GAAGA	3 cut(s)	215, 312, 333
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	7 cut(s)	59, 97, 99, 125, 187, 198, 315
MseI	TTAA	2 cut(s)	149, 335
MspA1I	CMGCKG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	32, 167
NcoI	CCATGG	3 cut(s)	125, 156, 209
NlaIII	CATG	3 cut(s)	129, 160, 213
NlaIV	GGNNCC	2 cut(s)	108, 257
NmuCI	GTSAC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	289
PflMI	CCANNNNNTGG	1 cut(s)	15
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	108, 257
PspPI	GGNCC	2 cut(s)	106, 185
PspPPI	RGGWCCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	149, 335
Sau96I	GGNCC	2 cut(s)	106, 185
SchI	GAGTC	1 cut(s)	268
SetI	ASST	3 cut(s)	37, 299, 304
SinI	GGWCC	2 cut(s)	106, 185
Sse9I	AATT	1 cut(s)	150
SseBI	AGGCCT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	101
StuI	AGGCCT	1 cut(s)	289
StyI	CCWWGG	3 cut(s)	125, 156, 209
TaaI	ACNGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	51, 190
TasI	AATT	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	149, 335
Tru9I	TTAA	2 cut(s)	149, 335
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspRI	CASTG	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	106, 185
XbaI	TCTAGA	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	2 cut(s)	132, 207
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.