Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Forward (+)

68556423 .. 68560184

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0559500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCATACTTCAAAGCATTGGCAACATCAGCTAGCTAGCTATACAAGTACTACAGTGATTTTAGCAATGAGGTCTTTAATAGCAGACACCACAGGCTCGGCTGCTTCTTCAGGTGGCGGTGCTGGTGACGCTGTTTTCAGCAACTGGAGATCTCCGATGCCCTACCTCTTCGGCGGCCTAGCACTCATGTTGGGACTCGTCGCAGTTGCATTGCTAATTCTAGCTTGCTCCTATCGTAGAACCTCGTCCAACTCAACAAGTTCGGGTCGTGAAGATGGAAAACCAACGTCAAGGGGAGTGGATGACATAGAGGCTGCAGAGCCGGAGCCCAAGATTCTCGTGATAATGGCCGGAGAGAAAACGCCGACATACTTGGCACACCCCATTTCTTCCTCTACTCGATTACCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

137

Amino Acids

14.44

Weight (kDa)

7.94

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	117, 174
AcoI	YGGCCR	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	4 cut(s)	31, 35, 39, 224
AluI	AGCT	4 cut(s)	31, 35, 39, 224
AlwNI	CAGNNNCTG	1 cut(s)	144
AoxI	GGCC	2 cut(s)	175, 348
ApeKI	GCWGC	2 cut(s)	101, 314
AsuHPI	GGTGA	1 cut(s)	137
AsuNHI	GCTAGC	2 cut(s)	31, 35
BanII	GRGCYC	1 cut(s)	330
BauI	CACGAG	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	88, 301
BccI	CCATC	1 cut(s)	269
BfaI	CTAG	4 cut(s)	32, 36, 179, 221
BfmI	CTRYAG	2 cut(s)	51, 315
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	3 cut(s)	102, 175, 315
BlsI	GCNGC	3 cut(s)	103, 176, 316
BmcAI	AGTACT	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	147
BmtI	GCTAGC	2 cut(s)	35, 39
BpmI	CTGGAG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	149
Bse3DI	GCAATG	2 cut(s)	72, 209
BseGI	GGATG	1 cut(s)	307
BseMI	GCAATG	2 cut(s)	72, 209
BseNI	ACTGG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	88, 301
BshFI	GGCC	2 cut(s)	177, 350
BsiSI	CCGG	2 cut(s)	323, 351
BslFI	GGGAC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	177, 350
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	2 cut(s)	117, 174
BspANI	GGCC	2 cut(s)	177, 350
BspLI	GGNNCC	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	319
BspOI	GCTAGC	2 cut(s)	35, 39
BsrDI	GCAATG	2 cut(s)	72, 209
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	149
BssSI	CACGAG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	33, 37, 226
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 128
BstSFI	CTRYAG	2 cut(s)	51, 315
BstV1I	GCAGC	2 cut(s)	88, 301
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	177, 350
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	3 cut(s)	33, 37, 226
CaiI	CAGNNNCTG	1 cut(s)	144
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	1 cut(s)	48
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	1 cut(s)	190
FaiI	YATR	5 cut(s)	6, 42, 188, 308, 370
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	102, 175, 315
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	3 cut(s)	102, 175, 315
FspBI	CTAG	4 cut(s)	32, 36, 179, 221
GluI	GCNGC	3 cut(s)	102, 175, 315
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	177, 350
HapII	CCGG	2 cut(s)	323, 351
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	2 cut(s)	195, 334
HpaII	CCGG	2 cut(s)	323, 351
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	269, 340
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	4, 209, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 128
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	233, 325
LpnPI	CCDG	6 cut(s)	78, 96, 108, 130, 336, 364
Lsp1109I	GCAGC	2 cut(s)	88, 301
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	4 cut(s)	32, 36, 179, 221
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	4 cut(s)	99, 160, 284, 381
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	5 cut(s)	63, 176, 253, 304, 403
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	77
MspI	CCGG	2 cut(s)	323, 351
MwoI	GCNNNNNNNGC	2 cut(s)	28, 128
NdeII	GATC	1 cut(s)	149
NheI	GCTAGC	2 cut(s)	31, 35
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	103, 176, 316
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	3 cut(s)	102, 175, 315
Sau3AI	GATC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	9 cut(s)	33, 37, 41, 74, 115, 168, 226, 245, 290
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	2 cut(s)	51, 315
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	117, 174
SspMI	CTAG	4 cut(s)	32, 36, 179, 221
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	400
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	101, 314
Tsp45I	GTSAC	1 cut(s)	125
TspRI	CASTG	1 cut(s)	60
XspI	CTAG	4 cut(s)	32, 36, 179, 221
ZrmI	AGTACT	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.