Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Forward (+)

85121278 .. 85123910

Gene Structure 2633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG552200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATAGCATATTAATTGCCATGGCTGCCACTGCAACTGCCTCTGCTGGACAATGTCGTGATGAGGGAGATGATAGGTATGGGAGGGGCAGCAATGGTGGATCAAAATTTGAGGCAGGACTGAGGAATGTGCAGAGTTCAAGAAGTGCACCAGTTTCTTCTAACAATGGTCCAAGTGGGTCAGTTAGTGCACATGGAGTATCTGTTATTAGAGGAAATGGACCATCAAACACTGGAAGTGGTTTGTCTGCTGAGGCTTATTGTCGCCAGTATGAAATAACTGTTATTTCATTGCTTGAGAGAGTGTTGCATGAAAATTTTATGAGCGACCCGATCTCGAACCGTCTGCAGCAGCCCACCCCAGCGCCTCGCTCTTACACTCCGCGCCTGCGCGACCCCACGCCTCTCCGCCTGCCAGCGCCCCGCGACTATATCTGCAAACCAGCCATCGTTGCAGACCCTCTCTCTCAATCGCTCCCCCTCCCTCAGATCCGATCTCTTGTACGCCGACGACGCGCACCAACAGCCGGAACTTCTCATCCGGTCCTTCCTTCAACGGCGACATCTCCTCCACGTGGAGCCTTCTCCTCCGACGCAGCAGAGCCACTCCTCGCCGGACTCTGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

209

Amino Acids

22.03

Weight (kDa)

9.55

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	385, 393, 426, 516
AciI	CCGC	3 cut(s)	383, 409, 424
AclWI	GGATC	2 cut(s)	109, 484
AcsI	RAATTY	2 cut(s)	107, 316
AcvI	CACGTG	1 cut(s)	575
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	527, 575
AgsI	TTSAA	2 cut(s)	141, 555
AloI	GAACNNNNNNTCC	2 cut(s)	523, 555
Alw21I	GWGCWC	2 cut(s)	151, 193
Alw44I	GTGCAC	2 cut(s)	147, 189
AlwI	GGATC	2 cut(s)	109, 484
ApaLI	GTGCAC	2 cut(s)	147, 189
ApeKI	GCWGC	5 cut(s)	26, 90, 349, 352, 596
ApoI	RAATTY	2 cut(s)	107, 316
AseI	ATTAAT	1 cut(s)	14
AspLEI	GCGC	5 cut(s)	367, 387, 393, 421, 518
AspS9I	GGNCC	3 cut(s)	170, 221, 544
AvaII	GGWCC	3 cut(s)	170, 221, 544
BaeGI	GKGCMC	2 cut(s)	151, 193
BbrPI	CACGTG	1 cut(s)	575
Bbv12I	GWGCWC	2 cut(s)	151, 193
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	5 cut(s)	13, 102, 361, 364, 608
BccI	CCATC	2 cut(s)	232, 455
BceAI	ACGGC	1 cut(s)	573
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	2 cut(s)	368, 422
BisI	GCNGC	5 cut(s)	27, 91, 350, 353, 597
BlsI	GCNGC	5 cut(s)	28, 92, 351, 354, 598
Bme18I	GGWCC	3 cut(s)	170, 221, 544
BmgT120I	GGNCC	3 cut(s)	170, 221, 544
BmiI	GGNNCC	1 cut(s)	580
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 553, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 575
Bse1I	ACTGG	3 cut(s)	152, 238, 268
Bse3DI	GCAATG	2 cut(s)	100, 290
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	527, 575
BseMI	GCAATG	2 cut(s)	100, 290
BseMII	CTCAG	3 cut(s)	113, 243, 500
BseNI	ACTGG	3 cut(s)	152, 238, 268
BseRI	GAGGAG	3 cut(s)	558, 577, 599
BseSI	GKGCMC	2 cut(s)	151, 193
BseXI	GCAGC	5 cut(s)	13, 102, 361, 364, 608
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	152
Bsh1236I	CGCG	4 cut(s)	385, 393, 426, 516
BsiHKAI	GWGCWC	2 cut(s)	151, 193
BsiSI	CCGG	3 cut(s)	528, 542, 615
BslI	CCNNNNNNNGG	2 cut(s)	527, 575
Bsp1286I	GDGCHC	2 cut(s)	151, 193
Bsp143I	GATC	4 cut(s)	101, 333, 489, 494
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	383, 409, 424
BspCNI	CTCAG	3 cut(s)	114, 244, 499
BspFNI	CGCG	4 cut(s)	385, 393, 426, 516
BspLI	GGNNCC	1 cut(s)	580
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	2 cut(s)	109, 484
BsrDI	GCAATG	2 cut(s)	100, 290
BsrI	ACTGG	3 cut(s)	152, 238, 268
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	101, 333, 489, 494
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	283, 344
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	389, 413, 417
BstDEI	CTNAG	3 cut(s)	122, 252, 486
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	4 cut(s)	385, 393, 426, 516
BstH2I	RGCGCY	2 cut(s)	368, 422
BstHHI	GCGC	5 cut(s)	367, 387, 393, 421, 518
BstKTI	GATC	4 cut(s)	104, 336, 492, 497
BstMBI	GATC	4 cut(s)	101, 333, 489, 494
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 32, 452, 513, 524
BstSFI	CTRYAG	1 cut(s)	347
BstSLI	GKGCMC	2 cut(s)	151, 193
BstUI	CGCG	4 cut(s)	385, 393, 426, 516
BstV1I	GCAGC	5 cut(s)	13, 102, 361, 364, 608
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 231
Cac8I	GCNNGC	3 cut(s)	389, 413, 417
CfoI	GCGC	5 cut(s)	367, 387, 393, 421, 518
Cfr13I	GGNCC	3 cut(s)	170, 221, 544
CseI	GACGC	2 cut(s)	522, 602
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	3 cut(s)	22, 194, 311
CviJI	RGCY	7 cut(s)	26, 257, 355, 446, 527, 581, 604
CviKI_1	RGCY	7 cut(s)	26, 257, 355, 446, 527, 581, 604
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	3 cut(s)	122, 252, 486
DpnI	GATC	4 cut(s)	103, 335, 491, 496
DpnII	GATC	4 cut(s)	101, 333, 489, 494
EciI	GGCGGA	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	3 cut(s)	170, 221, 544
Eco72I	CACGTG	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	3 cut(s)	25, 197, 314
FaiI	YATR	8 cut(s)	11, 23, 81, 195, 273, 312, 323, 432
FatI	CATG	3 cut(s)	21, 193, 310
FauI	CCCGC	1 cut(s)	431
Fnu4HI	GCNGC	5 cut(s)	27, 91, 350, 353, 597
FokI	GGATG	1 cut(s)	525
Fsp4HI	GCNGC	5 cut(s)	27, 91, 350, 353, 597
GlaI	GCGC	5 cut(s)	366, 386, 392, 420, 517
GluI	GCNGC	5 cut(s)	27, 91, 350, 353, 597
GsaI	CCCAGC	1 cut(s)	365
HaeII	RGCGCY	2 cut(s)	368, 422
HapII	CCGG	3 cut(s)	528, 542, 615
HgaI	GACGC	2 cut(s)	522, 602
HhaI	GCGC	5 cut(s)	367, 387, 393, 421, 518
Hin1II	CATG	3 cut(s)	25, 197, 314
Hin6I	GCGC	5 cut(s)	365, 385, 391, 419, 516
HinP1I	GCGC	5 cut(s)	365, 385, 391, 419, 516
HinfI	GANTC	1 cut(s)	618
HpaII	CCGG	3 cut(s)	528, 542, 615
Hpy166II	GTNNAC	2 cut(s)	149, 191
Hpy188I	TCNGA	3 cut(s)	489, 494, 592
Hpy188III	TCNNGA	3 cut(s)	59, 141, 337
Hpy8I	GTNNAC	2 cut(s)	149, 191
Hpy99I	CGWCG	3 cut(s)	513, 516, 596
HpyAV	CCTTC	3 cut(s)	557, 561, 592
HpyCH4III	ACNGT	2 cut(s)	283, 344
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	8 cut(s)	35, 133, 149, 191, 310, 349, 438, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 32, 452, 513, 524
HpyF3I	CTNAG	3 cut(s)	122, 252, 486
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	3 cut(s)	25, 197, 314
HspAI	GCGC	5 cut(s)	365, 385, 391, 419, 516
Kzo9I	GATC	4 cut(s)	101, 333, 489, 494
LmnI	GCTCC	2 cut(s)	480, 578
Lsp1109I	GCAGC	5 cut(s)	13, 102, 361, 364, 608
MaeII	ACGT	1 cut(s)	574
MalI	GATC	4 cut(s)	103, 335, 491, 496
MboI	GATC	4 cut(s)	101, 333, 489, 494
MboII	GAAGA	1 cut(s)	150
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	2 cut(s)	151, 193
MluCI	AATT	3 cut(s)	15, 107, 316
MlyI	GAGTC	1 cut(s)	612
MmeI	TCCRAC	1 cut(s)	615
MseI	TTAA	1 cut(s)	14
MspI	CCGG	3 cut(s)	528, 542, 615
MvnI	CGCG	4 cut(s)	385, 393, 426, 516
MwoI	GCNNNNNNNGC	5 cut(s)	26, 32, 452, 513, 524
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	101, 333, 489, 494
NlaIII	CATG	3 cut(s)	25, 197, 314
NlaIV	GGNNCC	1 cut(s)	580
PflFI	GACNNNGTC	1 cut(s)	54
PkrI	GCNGC	5 cut(s)	28, 92, 351, 354, 598
PleI	GAGTC	1 cut(s)	612
PmaCI	CACGTG	1 cut(s)	575
PmlI	CACGTG	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	612
Ppu21I	YACGTR	1 cut(s)	575
PshBI	ATTAAT	1 cut(s)	14
PspCI	CACGTG	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	3 cut(s)	170, 221, 544
PstI	CTGCAG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	489
PsyI	GACNNNGTC	1 cut(s)	54
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	5 cut(s)	27, 91, 350, 353, 597
Sau3AI	GATC	4 cut(s)	101, 333, 489, 494
Sau96I	GGNCC	3 cut(s)	170, 221, 544
SchI	GAGTC	1 cut(s)	612
SduI	GDGCHC	2 cut(s)	151, 193
SetI	ASST	2 cut(s)	80, 577
SfcI	CTRYAG	1 cut(s)	347
SinI	GGWCC	3 cut(s)	170, 221, 544
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	15, 107, 316
SsiI	CCGC	3 cut(s)	383, 409, 424
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	283, 344
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	1 cut(s)	338
TasI	AATT	3 cut(s)	15, 107, 316
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	2 cut(s)	37, 238
TseI	GCWGC	5 cut(s)	26, 90, 349, 352, 596
TspDTI	ATGAA	3 cut(s)	279, 288, 327
TspRI	CASTG	2 cut(s)	37, 238
Tth111I	GACNNNGTC	1 cut(s)	54
VneI	GTGCAC	2 cut(s)	147, 189
VpaK11BI	GGWCC	3 cut(s)	170, 221, 544
VspI	ATTAAT	1 cut(s)	14
XapI	RAATTY	2 cut(s)	107, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.