Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008577.1

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Forward (+)

4328 .. 9390

Gene Structure 5063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008577.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

atggctgccactgcaactgcctctgctggtcctcgatatgctccagaagacccaactctcccaaaaccatggaaaggattggttgatggtaaaactgggtatctttacttttggaaccccgagaccaatgtgactcaatatgataggcctacaggcacagctcctccatcaaaggcttcttctgcacagtatataagttcttcagttcaagttcaacaatcttcacaaggacaacgtcgtgatgagggagatgataggtatggcaggggcagcaatggtggatcaaaatttgaggcaggaccgaggaatgtacagagtgcaagaagtgcaccagtttcttctaacaatgggccaagtgggtcagttagtgcacatggaggatctgttattagaggaaatggaccatcagactctggaagtggtttgtctgctgaggcttattgtcgccggcatgaaataactgttattggggataatgtgcccccaccgtttacttccttcgaagctacgggcttcccatctgagattcttagagaggtacaaaatgctggtttttctgccccgactccaattcaagctcaatcatggccggttgctcttcaaagtagagacattgtggccattgctaaaacggggtcagggaagaccttggggtacttgcttcctggatttatgcatcttaagcgcgcccgtaataactctcagatgggtccaactgtgttggtgttatcaccaacaagggagctggccacacagattcaagatgaagcaatgaagtttggaaagtcttcaagaatagctgttgtgtgtttgtatggaggagcgccaaagggtccacaattgagagatattgacagaggagcagatgttgtggttgccactcctggccgcttgaatgacattctagaaatgaagagaatcagtctccatcaagtttcttacctagtgttggatgaggctgatcgtatgctggacatgggttttgaacctcaaataaggaagattgtgaaggagatacctgctcgccgccagaccttaatgtatacagcaacatggcccaaggaggttaggaagattgcatcagatctactggtcaactctgttcaggtgaacattggcaatgttgatgaacttgtcgcgaataagtcgatcacacagcatgttgaagtactggcgtccatggagaaacacagacgattggaacagatattgcgatcgcaagagccaggatccaagataattatattttgctcaaccaaaaagatgtgtgatcaactttctcgcaacttaacccgccagtttggagctgctgcaattcatggtgacaaatctcagactgagagggatcatgtcctgagtcaatttcgcacagggaggactccagttcttgtagcgactgatgttgcagctcgaggattggatgttaaggacataagggtggttataaattacgacttccctactggagtagaggattatgttcacaggattgggagaactggaagggcaggtgccactgggttggcttacacattctttggtgatcaggatgcaaaatatgctgcagaactcattaaagttttggaaggagcaaaccagcgtgtacccccagaaattcgtgagttggcttcacgtggtggtgggatgaacagattcagacgttggggctctgggtctggaggtcgtgatggtggccgaagtgattcaagctacggtggaagagatggtggaaggggcggtgggtttggatcttctttctctactggcagatatgaccgtggtccaaataatagttatgatgacaaggggtctgcttggagcaacaaaggttttactcgggagcgcagtcgtagtcctgaaaggtttaacaaagctccgccaacagctgttggctccggaggttggagttttcacaaagcaatgatggaacaacggggacggtcatcaccgcctccaaatcgtgttgagaagggaggagtagatggtttccgtccttctttctatggactggaagaagctgaggaaggcatgataccacaagaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

682

Amino Acids

73.95

Weight (kDa)

9.5

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1445
AarI	CACCTGC	1 cut(s)	1499
Acc36I	ACCTGC	2 cut(s)	1027, 1499
AccB1I	GGYRCC	1 cut(s)	1511
AccI	GTMKAC	1 cut(s)	1043
AccII	CGCG	2 cut(s)	687, 1139
AccIII	TCCGGA	1 cut(s)	1895
AciI	CCGC	6 cut(s)	889, 1027, 1294, 1737, 1877, 1949
AclWI	GGATC	6 cut(s)	289, 388, 1224, 1237, 1353, 1756
AcoI	YGGCCR	5 cut(s)	587, 618, 747, 886, 1693
AcsI	RAATTY	2 cut(s)	287, 1614
AcuI	CTGAAG	1 cut(s)	186
AcvI	CACGTG	1 cut(s)	1634
AcyI	GRCGYC	1 cut(s)	1175
AdeI	CACNNNGTG	1 cut(s)	1637
AfaI	GTAC	5 cut(s)	312, 540, 656, 1170, 1605
AfiI	CCNNNNNNNGG	3 cut(s)	74, 949, 1902
AflII	CTTAAG	1 cut(s)	680
AhdI	GACNNNNNGTC	1 cut(s)	1807
AjnI	CCWGG	3 cut(s)	664, 883, 1225
Alw21I	GWGCWC	2 cut(s)	331, 373
Alw26I	GTCTC	3 cut(s)	116, 603, 929
Alw44I	GTGCAC	2 cut(s)	327, 369
AlwI	GGATC	6 cut(s)	289, 388, 1224, 1237, 1353, 1756
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	3 cut(s)	119, 1410, 1836
Aor13HI	TCCGGA	1 cut(s)	1895
AoxI	GGCC	8 cut(s)	146, 350, 587, 618, 747, 886, 1055, 1693
ApaLI	GTGCAC	2 cut(s)	327, 369
ApeKI	GCWGC	6 cut(s)	5, 270, 1307, 1310, 1406, 1562
ApoI	RAATTY	2 cut(s)	287, 1614
ArsI	GACNNNNNNTTYG	2 cut(s)	965, 997
AsiSI	GCGATCGC	1 cut(s)	1217
Asp700I	GAANNNNTTC	3 cut(s)	787, 1652, 1702
AspLEI	GCGC	4 cut(s)	687, 689, 826, 1845
AspS9I	GGNCC	8 cut(s)	29, 299, 350, 401, 710, 833, 1056, 1781
AsuHPI	GGTGA	5 cut(s)	723, 1120, 1334, 1553, 1938
AsuII	TTCGAA	1 cut(s)	501
AvaI	CYCGRG	3 cut(s)	119, 1410, 1836
AvaII	GGWCC	6 cut(s)	29, 299, 401, 710, 833, 1781
BaeGI	GKGCMC	3 cut(s)	331, 373, 483
BalI	TGGCCA	2 cut(s)	620, 749
BamHI	GGATCC	1 cut(s)	1229
BanI	GGYRCC	1 cut(s)	1511
BanII	GRGCYC	1 cut(s)	1670
BarI	GAAGNNNNNNTAC	2 cut(s)	2016, 2048
BbrPI	CACGTG	1 cut(s)	1634
BbsI	GAAGAC	3 cut(s)	54, 650, 780
Bbv12I	GWGCWC	2 cut(s)	331, 373
BbvCI	CCTCAGC	2 cut(s)	432, 2019
BbvI	GCAGC	5 cut(s)	282, 1294, 1297, 1418, 1549
BciT130I	CCWGG	3 cut(s)	666, 885, 1227
BclI	TGATCA	2 cut(s)	1270, 1543
BcoDI	GTCTC	3 cut(s)	116, 603, 929
BfaI	CTAG	2 cut(s)	905, 944
BfmI	CTRYAG	2 cut(s)	150, 1563
BfoI	RGCGCY	1 cut(s)	827
BfrI	CTTAAG	1 cut(s)	680
BfuAI	ACCTGC	2 cut(s)	1027, 1499
BglII	AGATCT	1 cut(s)	1084
BisI	GCNGC	8 cut(s)	6, 271, 889, 1027, 1308, 1311, 1407, 1563
BlsI	GCNGC	8 cut(s)	7, 272, 890, 1028, 1309, 1312, 1408, 1564
BmcAI	AGTACT	1 cut(s)	1170
Bme1390I	CCNGG	3 cut(s)	666, 885, 1227
Bme18I	GGWCC	6 cut(s)	29, 299, 401, 710, 833, 1781
BmeRI	GACNNNNNGTC	1 cut(s)	1807
BmeT110I	CYCGRG	3 cut(s)	119, 1410, 1836
BmgT120I	GGNCC	8 cut(s)	29, 299, 350, 401, 710, 833, 1056, 1781
BmiI	GGNNCC	6 cut(s)	116, 711, 834, 1231, 1513, 1894
BmrFI	CCNGG	3 cut(s)	666, 885, 1227
BmrI	ACTGGG	2 cut(s)	105, 1527
BmsI	GCATC	3 cut(s)	685, 1088, 1540
BmuI	ACTGGG	2 cut(s)	105, 1527
BoxI	GACNNNNGTC	1 cut(s)	1779
BpiI	GAAGAC	3 cut(s)	54, 650, 780
BpmI	CTGGAG	4 cut(s)	27, 1365, 1485, 1698
Bpu10I	CCTNAGC	2 cut(s)	432, 2019
Bpu14I	TTCGAA	1 cut(s)	501
BsaAI	YACGTR	1 cut(s)	1634
BsaHI	GRCGYC	1 cut(s)	1175
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	6 cut(s)	68, 302, 648, 1059, 1179, 1777
BsaWI	WCCGGW	1 cut(s)	1895
BsaXI	ACNNNNNCTCC	6 cut(s)	148, 178, 369, 399, 852, 882
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 949, 1902
Bse118I	RCCGGY	2 cut(s)	447, 589
Bse3DI	GCAATG	5 cut(s)	280, 621, 777, 1126, 1926
BseAI	TCCGGA	1 cut(s)	1895
BseBI	CCWGG	3 cut(s)	666, 885, 1227
BseDI	CCNNGG	6 cut(s)	68, 302, 648, 1059, 1179, 1777
BseGI	GGATG	4 cut(s)	958, 1426, 1555, 1650
BseLI	CCNNNNNNNGG	3 cut(s)	74, 949, 1902
BseMI	GCAATG	5 cut(s)	280, 621, 777, 1126, 1926
BseMII	CTCAG	7 cut(s)	423, 513, 716, 1329, 1346, 1346, 2010
BsePI	GCGCGC	1 cut(s)	685
BseRI	GAGGAG	4 cut(s)	153, 834, 873, 1989
BseSI	GKGCMC	3 cut(s)	331, 373, 483
BseXI	GCAGC	5 cut(s)	282, 1294, 1297, 1418, 1549
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	2 cut(s)	687, 1139
Bsh1285I	CGRYCG	1 cut(s)	1217
BshFI	GGCC	8 cut(s)	148, 352, 589, 620, 749, 888, 1057, 1695
BshNI	GGYRCC	1 cut(s)	1511
BsiEI	CGRYCG	1 cut(s)	1217
BsiHKAI	GWGCWC	2 cut(s)	331, 373
BsiHKCI	CYCGRG	3 cut(s)	119, 1410, 1836
BsiSI	CCGG	3 cut(s)	448, 590, 1896
BslFI	GGGAC	1 cut(s)	1950
BslI	CCNNNNNNNGG	3 cut(s)	74, 949, 1902
BsmAI	GTCTC	3 cut(s)	116, 603, 929
BsmFI	GGGAC	1 cut(s)	1950
BsnI	GGCC	8 cut(s)	148, 352, 589, 620, 749, 888, 1057, 1695
Bso31I	GGTCTC	1 cut(s)	116
BsoBI	CYCGRG	3 cut(s)	119, 1410, 1836
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	4 cut(s)	331, 373, 483, 1670
Bsp13I	TCCGGA	1 cut(s)	1895
Bsp1407I	TGTACA	1 cut(s)	310
Bsp19I	CCATGG	2 cut(s)	68, 1179
Bsp68I	TCGCGA	1 cut(s)	1139
BspACI	CCGC	6 cut(s)	889, 1027, 1294, 1737, 1877, 1949
BspANI	GGCC	8 cut(s)	148, 352, 589, 620, 749, 888, 1057, 1695
BspCNI	CTCAG	7 cut(s)	424, 514, 715, 1330, 1345, 1347, 2011
BspEI	TCCGGA	1 cut(s)	1895
BspFNI	CGCG	2 cut(s)	687, 1139
BspLI	GGNNCC	6 cut(s)	116, 711, 834, 1231, 1513, 1894
BspMAI	CTGCAG	1 cut(s)	1567
BspMI	ACCTGC	2 cut(s)	1027, 1499
BspPI	GGATC	6 cut(s)	289, 388, 1224, 1237, 1353, 1756
BspQI	GCTCTTC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	1511
BspTI	CTTAAG	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	5 cut(s)	280, 621, 777, 1126, 1926
BsrFI	RCCGGY	2 cut(s)	447, 589
BsrGI	TGTACA	1 cut(s)	310
BssAI	RCCGGY	2 cut(s)	447, 589
BssECI	CCNNGG	6 cut(s)	68, 302, 648, 1059, 1179, 1777
BssHII	GCGCGC	1 cut(s)	685
BssNAI	GTATAC	1 cut(s)	1044
BssNI	GRCGYC	1 cut(s)	1175
BssT1I	CCWWGG	4 cut(s)	68, 648, 1059, 1179
Bst1107I	GTATAC	1 cut(s)	1044
Bst2UI	CCWGG	3 cut(s)	666, 885, 1227
Bst4CI	ACNGT	7 cut(s)	189, 463, 489, 718, 1715, 1778, 1941
Bst6I	CTCTTC	3 cut(s)	603, 908, 1714
BstACI	GRCGYC	1 cut(s)	1175
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	2 cut(s)	326, 1559
BstAUI	TGTACA	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	1634
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	4 cut(s)	449, 687, 747, 1024
BstDEI	CTNAG	8 cut(s)	432, 522, 530, 702, 1332, 1338, 1355, 2019
BstDSI	CCRYGG	3 cut(s)	68, 1179, 1777
BstF5I	GGATG	4 cut(s)	958, 1426, 1555, 1650
BstFNI	CGCG	2 cut(s)	687, 1139
BstH2I	RGCGCY	1 cut(s)	827
BstHHI	GCGC	4 cut(s)	687, 689, 826, 1845
BstMAI	GTCTC	3 cut(s)	116, 603, 929
BstMCI	CGRYCG	1 cut(s)	1217
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 182, 270, 326, 682, 1559
BstNI	CCWGG	3 cut(s)	666, 885, 1227
BstNSI	RCATGY	1 cut(s)	1163
BstPAI	GACNNNNGTC	1 cut(s)	1779
BstSCI	CCNGG	3 cut(s)	664, 883, 1225
BstSFI	CTRYAG	2 cut(s)	150, 1563
BstSLI	GKGCMC	3 cut(s)	331, 373, 483
BstUI	CGCG	2 cut(s)	687, 1139
BstV1I	GCAGC	5 cut(s)	282, 1294, 1297, 1418, 1549
BstV2I	GAAGAC	3 cut(s)	54, 650, 780
BstX2I	RGATCY	4 cut(s)	380, 1084, 1229, 1748
BstXI	CCANNNNNNTGG	2 cut(s)	69, 1522
BstYI	RGATCY	4 cut(s)	380, 1084, 1229, 1748
BstZ17I	GTATAC	1 cut(s)	1044
BsuRI	GGCC	8 cut(s)	148, 352, 589, 620, 749, 888, 1057, 1695
BtgI	CCRYGG	3 cut(s)	68, 1179, 1777
BtsCI	GGATG	4 cut(s)	958, 1426, 1555, 1650
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 1515
BtuMI	TCGCGA	1 cut(s)	1139
BveI	ACCTGC	2 cut(s)	1027, 1499
Cac8I	GCNNGC	4 cut(s)	449, 687, 747, 1024
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	4 cut(s)	687, 689, 826, 1845
Cfr10I	RCCGGY	2 cut(s)	447, 589
Cfr13I	GGNCC	8 cut(s)	29, 299, 350, 401, 710, 833, 1056, 1781
CseI	GACGC	1 cut(s)	1164
Csp6I	GTAC	5 cut(s)	311, 539, 655, 1169, 1604
CviQI	GTAC	5 cut(s)	311, 539, 655, 1169, 1604
DdeI	CTNAG	8 cut(s)	432, 522, 530, 702, 1332, 1338, 1355, 2019
DraIII	CACNNNGTG	1 cut(s)	1637
DriI	GACNNNNNGTC	1 cut(s)	1807
EaeI	YGGCCR	5 cut(s)	587, 618, 747, 886, 1693
Eam1104I	CTCTTC	3 cut(s)	603, 908, 1714
Eam1105I	GACNNNNNGTC	1 cut(s)	1807
EarI	CTCTTC	3 cut(s)	603, 908, 1714
EciI	GGCGGA	1 cut(s)	1866
Eco130I	CCWWGG	4 cut(s)	68, 648, 1059, 1179
Eco147I	AGGCCT	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	1670
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	6 cut(s)	29, 299, 401, 710, 833, 1781
Eco57I	CTGAAG	1 cut(s)	186
Eco72I	CACGTG	1 cut(s)	1634
Eco88I	CYCGRG	3 cut(s)	119, 1410, 1836
EcoRII	CCWGG	3 cut(s)	664, 883, 1225
EcoT14I	CCWWGG	4 cut(s)	68, 648, 1059, 1179
EcoT22I	ATGCAT	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	1670
ErhI	CCWWGG	4 cut(s)	68, 648, 1059, 1179
FaqI	GGGAC	1 cut(s)	1950
FauI	CCCGC	1 cut(s)	1301
FbaI	TGATCA	2 cut(s)	1270, 1543
FblI	GTMKAC	1 cut(s)	1043
Fnu4HI	GCNGC	8 cut(s)	6, 271, 889, 1027, 1308, 1311, 1407, 1563
FokI	GGATG	4 cut(s)	965, 1433, 1562, 1657
FriOI	GRGCYC	1 cut(s)	1670
Fsp4HI	GCNGC	8 cut(s)	6, 271, 889, 1027, 1308, 1311, 1407, 1563
FspBI	CTAG	2 cut(s)	905, 944
GlaI	GCGC	4 cut(s)	686, 688, 825, 1844
GluI	GCNGC	8 cut(s)	6, 271, 889, 1027, 1308, 1311, 1407, 1563
GsuI	CTGGAG	4 cut(s)	27, 1365, 1485, 1698
HaeII	RGCGCY	1 cut(s)	827
HaeIII	GGCC	8 cut(s)	148, 352, 589, 620, 749, 888, 1057, 1695
HapII	CCGG	3 cut(s)	448, 590, 1896
HgaI	GACGC	1 cut(s)	1164
HhaI	GCGC	4 cut(s)	687, 689, 826, 1845
Hin1I	GRCGYC	1 cut(s)	1175
Hin6I	GCGC	4 cut(s)	685, 687, 824, 1843
HinP1I	GCGC	4 cut(s)	685, 687, 824, 1843
HincII	GTYRAC	1 cut(s)	1096
HindII	GTYRAC	1 cut(s)	1096
HpaII	CCGG	3 cut(s)	448, 590, 1896
HphI	GGTGA	5 cut(s)	723, 1120, 1334, 1553, 1938
Hpy166II	GTNNAC	9 cut(s)	329, 371, 492, 836, 1044, 1096, 1111, 1483, 1604
Hpy188I	TCNGA	6 cut(s)	409, 523, 705, 1084, 1335, 1658
Hpy8I	GTNNAC	9 cut(s)	329, 371, 492, 836, 1044, 1096, 1111, 1483, 1604
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	8 cut(s)	508, 1003, 1497, 1580, 1725, 1963, 2004, 2018
HpyCH4III	ACNGT	7 cut(s)	189, 463, 489, 718, 1715, 1778, 1941
HpyCH4IV	ACGT	3 cut(s)	235, 1633, 1660
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 182, 270, 326, 682, 1559
HpyF3I	CTNAG	8 cut(s)	432, 522, 530, 702, 1332, 1338, 1355, 2019
HpySE526I	ACGT	3 cut(s)	235, 1633, 1660
Hsp92I	GRCGYC	1 cut(s)	1175
HspAI	GCGC	4 cut(s)	685, 687, 824, 1843
Kpn2I	TCCGGA	1 cut(s)	1895
KroI	GCCGGC	1 cut(s)	447
KroNI	GCCGGC	1 cut(s)	449
Ksp22I	TGATCA	2 cut(s)	1270, 1543
LguI	GCTCTTC	1 cut(s)	603
Lsp1109I	GCAGC	5 cut(s)	282, 1294, 1297, 1418, 1549
LweI	GCATC	3 cut(s)	685, 1088, 1540
MaeI	CTAG	2 cut(s)	905, 944
MaeII	ACGT	3 cut(s)	235, 1633, 1660
MaeIII	GTNAC	2 cut(s)	130, 1322
MfeI	CAATTG	1 cut(s)	839
MflI	RGATCY	4 cut(s)	380, 1084, 1229, 1748
MhlI	GDGCHC	4 cut(s)	331, 373, 483, 1670
MlsI	TGGCCA	2 cut(s)	620, 749
MluCI	AATT	8 cut(s)	287, 570, 839, 1239, 1314, 1361, 1447, 1614
MluNI	TGGCCA	2 cut(s)	620, 749
MlyI	GAGTC	5 cut(s)	127, 404, 559, 1366, 1372
MmeI	TCCRAC	3 cut(s)	737, 930, 1883
Mox20I	TGGCCA	2 cut(s)	620, 749
Mph1103I	ATGCAT	1 cut(s)	678
MroI	TCCGGA	1 cut(s)	1895
MroNI	GCCGGC	1 cut(s)	447
MroXI	GAANNNNTTC	3 cut(s)	787, 1652, 1702
MscI	TGGCCA	2 cut(s)	620, 749
MseI	TTAA	6 cut(s)	681, 1037, 1289, 1425, 1575, 1866
MslI	CAYNNNNRTG	1 cut(s)	1436
Msp20I	TGGCCA	2 cut(s)	620, 749
MspA1I	CMGCKG	1 cut(s)	1886
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	3 cut(s)	448, 590, 1896
MspR9I	CCNGG	3 cut(s)	666, 885, 1227
MunI	CAATTG	1 cut(s)	839
MvaI	CCWGG	3 cut(s)	666, 885, 1227
MvnI	CGCG	2 cut(s)	687, 1139
MwoI	GCNNNNNNNGC	6 cut(s)	11, 182, 270, 326, 682, 1559
NaeI	GCCGGC	1 cut(s)	449
NcoI	CCATGG	2 cut(s)	68, 1179
NgoMIV	GCCGGC	1 cut(s)	447
NlaIV	GGNNCC	6 cut(s)	116, 711, 834, 1231, 1513, 1894
NmuCI	GTSAC	2 cut(s)	130, 1322
NruI	TCGCGA	1 cut(s)	1139
NsiI	ATGCAT	1 cut(s)	678
NspI	RCATGY	1 cut(s)	1163
NspV	TTCGAA	1 cut(s)	501
PaeR7I	CTCGAG	1 cut(s)	1410
PaqCI	CACCTGC	1 cut(s)	1499
PauI	GCGCGC	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	603
PdiI	GCCGGC	1 cut(s)	449
PdmI	GAANNNNTTC	3 cut(s)	787, 1652, 1702
PfeI	GAWTC	5 cut(s)	526, 757, 918, 1653, 1703
PflFI	GACNNNGTC	1 cut(s)	234
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	8 cut(s)	7, 272, 890, 1028, 1309, 1312, 1408, 1564
Ple19I	CGATCG	1 cut(s)	1217
PleI	GAGTC	5 cut(s)	127, 404, 559, 1365, 1372
PmaCI	CACGTG	1 cut(s)	1634
PmlI	CACGTG	1 cut(s)	1634
PpsI	GAGTC	5 cut(s)	127, 404, 559, 1365, 1372
Ppu21I	YACGTR	1 cut(s)	1634
PshAI	GACNNNNGTC	1 cut(s)	1779
PsiI	TTATAA	1 cut(s)	1445
Psp6I	CCWGG	3 cut(s)	664, 883, 1225
PspCI	CACGTG	1 cut(s)	1634
PspGI	CCWGG	3 cut(s)	664, 883, 1225
PspN4I	GGNNCC	6 cut(s)	116, 711, 834, 1231, 1513, 1894
PspPI	GGNCC	8 cut(s)	29, 299, 350, 401, 710, 833, 1056, 1781
PspXI	VCTCGAGB	1 cut(s)	1410
PstI	CTGCAG	1 cut(s)	1567
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	4 cut(s)	380, 1084, 1229, 1748
PsyI	GACNNNGTC	1 cut(s)	234
PteI	GCGCGC	1 cut(s)	685
PvuI	CGATCG	1 cut(s)	1217
PvuII	CAGCTG	1 cut(s)	1886
RgaI	GCGATCGC	1 cut(s)	1217
RruI	TCGCGA	1 cut(s)	1139
RsaI	GTAC	5 cut(s)	312, 540, 656, 1170, 1605
RsaNI	GTAC	5 cut(s)	311, 539, 655, 1169, 1604
RseI	CAYNNNNRTG	1 cut(s)	1436
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	6 cut(s)	681, 1037, 1289, 1425, 1575, 1866
SatI	GCNGC	8 cut(s)	6, 271, 889, 1027, 1308, 1311, 1407, 1563
Sau96I	GGNCC	8 cut(s)	29, 299, 350, 401, 710, 833, 1056, 1781
ScaI	AGTACT	1 cut(s)	1170
SchI	GAGTC	5 cut(s)	127, 404, 559, 1366, 1372
ScrFI	CCNGG	3 cut(s)	666, 885, 1227
SduI	GDGCHC	4 cut(s)	331, 373, 483, 1670
SfaAI	GCGATCGC	1 cut(s)	1217
SfaNI	GCATC	3 cut(s)	685, 1088, 1540
SfcI	CTRYAG	2 cut(s)	150, 1563
Sfr274I	CTCGAG	1 cut(s)	1410
SfuI	TTCGAA	1 cut(s)	501
SgfI	GCGATCGC	1 cut(s)	1217
SinI	GGWCC	6 cut(s)	29, 299, 401, 710, 833, 1781
SlaI	CTCGAG	1 cut(s)	1410
SmiMI	CAYNNNNRTG	1 cut(s)	1436
SmlI	CTYRAG	2 cut(s)	680, 1410
SmoI	CTYRAG	2 cut(s)	680, 1410
Sse9I	AATT	8 cut(s)	287, 570, 839, 1239, 1314, 1361, 1447, 1614
SseBI	AGGCCT	1 cut(s)	148
SsiI	CCGC	6 cut(s)	889, 1027, 1294, 1737, 1877, 1949
SspMI	CTAG	2 cut(s)	905, 944
StuI	AGGCCT	1 cut(s)	148
StyD4I	CCNGG	3 cut(s)	664, 883, 1225
StyI	CCWWGG	4 cut(s)	68, 648, 1059, 1179
TaaI	ACNGT	7 cut(s)	189, 463, 489, 718, 1715, 1778, 1941
TaiI	ACGT	3 cut(s)	238, 1636, 1663
TaqI	TCGA	4 cut(s)	34, 501, 1148, 1411
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	8 cut(s)	287, 570, 839, 1239, 1314, 1361, 1447, 1614
TatI	WGTACW	2 cut(s)	310, 1168
TauI	GCSGC	2 cut(s)	891, 1029
TfiI	GAWTC	5 cut(s)	526, 757, 918, 1653, 1703
Tru1I	TTAA	6 cut(s)	681, 1037, 1289, 1425, 1575, 1866
Tru9I	TTAA	6 cut(s)	681, 1037, 1289, 1425, 1575, 1866
TscAI	CASTG	2 cut(s)	16, 1522
TseFI	GTSAC	2 cut(s)	130, 1322
TseI	GCWGC	6 cut(s)	5, 270, 1307, 1310, 1406, 1562
Tsp45I	GTSAC	2 cut(s)	130, 1322
TspDTI	ATGAA	7 cut(s)	468, 780, 788, 926, 1143, 1307, 1661
TspGWI	ACGGA	1 cut(s)	1979
TspRI	CASTG	2 cut(s)	16, 1522
Tth111I	GACNNNGTC	1 cut(s)	234
Vha464I	CTTAAG	1 cut(s)	680
VneI	GTGCAC	2 cut(s)	327, 369
VpaK11BI	GGWCC	6 cut(s)	29, 299, 401, 710, 833, 1781
XapI	RAATTY	2 cut(s)	287, 1614
XbaI	TCTAGA	1 cut(s)	904
XceI	RCATGY	1 cut(s)	1163
XhoI	CTCGAG	1 cut(s)	1410
XmiI	GTMKAC	1 cut(s)	1043
XmnI	GAANNNNTTC	3 cut(s)	787, 1652, 1702
XspI	CTAG	2 cut(s)	905, 944
ZrmI	AGTACT	1 cut(s)	1170
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.