Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002971

Physical Location & Seq

Genomic Coordinates Reverse (-)

46162698 .. 46169894

Gene Structure 7197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG325700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAAGGACAACGTCGTGATGAGGGAGATGATAGGTATGGGAGGGGCAGCAATGGTGGAACAAAATTTGAGGCAGGACTGAAGAATGTGCAGAGTTCAAGACGTGCACCAGTTTCTTCTAACAATGGTCCAAGTGGGTCAGTTAGTGCACATGGAGTATCTGTTATTAGAGGAAATGGACCATCAAACACTGGAAGTGGTTTGTCTGCTGAGGCTTATTGTCGCCAGTATGAAATAACTGGTGATAATGTGCCCCCACCGTTTACTTCTTTTGAAGCTACGAGCTTCCCGTCTGAAATTCTTAGAGAGTCTCTTCTCCTTGGACTAAGTGACCCGAAAAGGTGGTTCAACTTTTTGGAGCATCATGTACAAACTTGTCATGGTTACGTGTCCGTTGCCGTGTTGGGAGATCAGGACAAACCAACTCTTATCACTTATCCTGATTTAGCTTTAAATCGTAATACCAGGCCAAAACTCGAAGGAAGTGTTGCAGATGGAGAAGCAGCTATTTTGAAGAAGGCCTCGAGAGTTTTCTGGGAAAGAAAATGGGATTGGGCGGGAGTTTTCAGGAAGATTTTGGATATCTCTGGGAGCTTAATGCTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

202

Amino Acids

22.04

Weight (kDa)

8.9

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	120 - 155	1.2e-07	Ndr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01540 AT3G01540 AT3G01540 AT3G01540 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610 AT5G14610
fragaria_vesca	FvH4_3g33550 FvH4_6g50990
malus_domestica	MD09G1029800.v1.1 MD17G1031800.v1.1
prunus_persica	Prupe.3G287500_v2.0.a1 Prupe.3G287500_v2.0.a1
pyrus_communis	pycom17g02940
rosa_chinensis	RchiOBHm_Chr2g0172491 RchiOBHm_Chr3g0496011
rosa_laevigata	RLG00000022110 RLG00000026510
rosa_multiflora	Rmu_co8447803.1_g000001 Rmu_sc0008577.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079810 Rroxscaffold_6G00401610
rosa_rugosa	Rorug02G0559500
rosa_samantha	Rh1CG060200 Rh2AG635200 Rh2BG648700 Rh2CG615300 Rh2DG663200 Rh3AG325700 Rh5DG348900 Rh5DG552200 Rh7AG279200 Rh7CG298300
rosa_wichuraiana	Rw2G052550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	65, 297
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	369
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	99, 275, 349, 514
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	535, 567
AluBI	AGCT	5 cut(s)	278, 285, 449, 506, 594
AluI	AGCT	5 cut(s)	278, 285, 449, 506, 594
Alw21I	GWGCWC	2 cut(s)	109, 151
Alw26I	GTCTC	1 cut(s)	315
Alw44I	GTGCAC	2 cut(s)	105, 147
Ama87I	CYCGRG	1 cut(s)	523
AoxI	GGCC	2 cut(s)	467, 519
ApaLI	GTGCAC	2 cut(s)	105, 147
ApeKI	GCWGC	2 cut(s)	48, 503
ApoI	RAATTY	2 cut(s)	65, 297
AspS9I	GGNCC	2 cut(s)	128, 179
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	128, 179
BaeGI	GKGCMC	3 cut(s)	109, 151, 255
Bbv12I	GWGCWC	2 cut(s)	109, 151
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	60, 515
BccI	CCATC	2 cut(s)	190, 488
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	315
BisI	GCNGC	2 cut(s)	49, 504
BlsI	GCNGC	2 cut(s)	50, 505
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	2 cut(s)	128, 179
BmeT110I	CYCGRG	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	128, 179
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse1I	ACTGG	4 cut(s)	110, 196, 226, 244
Bse3DI	GCAATG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	4 cut(s)	110, 196, 226, 244
BseSI	GKGCMC	3 cut(s)	109, 151, 255
BseXI	GCAGC	2 cut(s)	60, 515
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	469, 521
BsiHKAI	GWGCWC	2 cut(s)	109, 151
BsiHKCI	CYCGRG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	469, 521
BsoBI	CYCGRG	1 cut(s)	523
Bsp1286I	GDGCHC	3 cut(s)	109, 151, 255
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	2 cut(s)	469, 521
BspCNI	CTCAG	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	4 cut(s)	110, 196, 226, 244
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	210, 302, 326
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	409
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	464
BstSLI	GKGCMC	3 cut(s)	109, 151, 255
BstV1I	GCAGC	2 cut(s)	60, 515
BsuRI	GGCC	2 cut(s)	469, 521
BtrI	CACGTC	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	128, 179
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	3 cut(s)	152, 365, 380
CviJI	RGCY	8 cut(s)	215, 278, 285, 449, 469, 506, 521, 594
CviKI_1	RGCY	8 cut(s)	215, 278, 285, 449, 469, 506, 521, 594
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	3 cut(s)	210, 302, 326
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	2 cut(s)	128, 179
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	155, 368, 383
FaiI	YATR	5 cut(s)	39, 153, 231, 366, 381
FatI	CATG	3 cut(s)	151, 364, 379
FauI	CCCGC	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	49, 504
Fsp4HI	GCNGC	2 cut(s)	49, 504
GluI	GCNGC	2 cut(s)	49, 504
HaeIII	GGCC	2 cut(s)	469, 521
Hin1II	CATG	3 cut(s)	155, 368, 383
HinfI	GANTC	1 cut(s)	308
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	107, 149, 264
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	6 cut(s)	17, 99, 413, 440, 525, 568
Hpy8I	GTNNAC	3 cut(s)	107, 149, 264
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	473, 511
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	3 cut(s)	13, 103, 387
HpyCH4V	TGCA	4 cut(s)	91, 107, 149, 491
HpyF3I	CTNAG	3 cut(s)	210, 302, 326
HpySE526I	ACGT	3 cut(s)	13, 103, 387
Hsp92II	CATG	3 cut(s)	155, 368, 383
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	2 cut(s)	358, 591
Lsp1109I	GCAGC	2 cut(s)	60, 515
LweI	GCATC	1 cut(s)	370
MaeII	ACGT	3 cut(s)	13, 103, 387
MaeIII	GTNAC	2 cut(s)	329, 383
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	5 cut(s)	94, 108, 305, 526, 583
MhlI	GDGCHC	3 cut(s)	109, 151, 255
MluCI	AATT	2 cut(s)	65, 297
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	6 cut(s)	16, 36, 64, 164, 205, 532
MseI	TTAA	3 cut(s)	452, 596, 607
MspR9I	CCNGG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	466
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	3 cut(s)	155, 368, 383
NmuCI	GTSAC	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PflFI	GACNNNGTC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	50, 505
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspPI	GGNCC	2 cut(s)	128, 179
PsyI	GACNNNGTC	1 cut(s)	12
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	452, 596, 607
SatI	GCNGC	2 cut(s)	49, 504
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	2 cut(s)	128, 179
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	3 cut(s)	109, 151, 255
SfaNI	GCATC	1 cut(s)	370
Sfr274I	CTCGAG	1 cut(s)	523
SinI	GGWCC	2 cut(s)	128, 179
SlaI	CTCGAG	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	2 cut(s)	65, 297
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	1 cut(s)	557
StuI	AGGCCT	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	3 cut(s)	16, 106, 390
TaqI	TCGA	2 cut(s)	477, 524
TasI	AATT	2 cut(s)	65, 297
TatI	WGTACW	1 cut(s)	367
Tru1I	TTAA	3 cut(s)	452, 596, 607
Tru9I	TTAA	3 cut(s)	452, 596, 607
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	2 cut(s)	48, 503
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	17, 246
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	12
VneI	GTGCAC	2 cut(s)	105, 147
VpaK11BI	GGWCC	2 cut(s)	128, 179
XapI	RAATTY	2 cut(s)	65, 297
XhoI	CTCGAG	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.