Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Forward (+)

13543329 .. 13546761

Gene Structure 3433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1090200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2256 bp

ATGCCCCTCCCGAAACATCATATTCACAAGCTACCTTCATTTCACTGGTCCCCCTCCGACGCCGCCCTCGCCGACAAGGCAATAACCTACCTCAAACGCCACCCTCAACACCTCACTTCTCTATCTTCCCATTTTACCCCAGAGGCAGCCTCCTGTGTCCTCCTCAAGTCCCAATTCGACCAAACCCTAACCCTAAATTTCCTCAACTGGGCTCGAAACCGCCAATTCCTCAACTTCCCATGCAAGTGCCTGGCGCTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCTCAATCCCTCGCGGAGGACGTTGCCCTCAACACCGTCGATGATGGGGGCAGTTTGGTCTTTCAGTGCCTCGCTGACTCCTTTCATAGCTGCAATTCGAGCTCGGCGGTCTTTGACTTGGTGGTGAAGTCTTACTCTCACTTGAATTTCATTGATAAAGCAATGAACATTCTTAGTTTAGCTAAAGTTCATGGATTTATGCCTGGTGTACTGTCGTATAATGCAATTTTAGATGCAATTATTAGGTCAAAAGGGTCGGTTAAATTTGCAGAGGAGGTGTTGAGTGAGATGAGTAGGAATGGGGTCTCTCCGAATGTGTATACTTACAATATTTTGATTAGGGGTTGTAGCGGGGCGGGGAATTTGGAAATGGGGTTGTATTTTTTCGGTGAAATGGAAAGAAATGGCTGTTTGCCGAATGTGGTTACTTATAATACATTGATTGATGCCTATTGCAAGTTGAAGAGGATTGATGATGCGTTTGAACTGTTCAGATCCATGGCGTTGAAGGGTTTGGAGCCAAATTTGATTTCTTATAATGTGGTAATCAATGGCTTGTGTCGAGAAGGCAGGATGAACGAGACAATTCAGGTCCTTGATGACATGAAAAGAAAAGGTTTTGTTCCTGATGAGGTGACTGGTAATACACTCATTAGTGGATATTGCAAGGCAGGCAATTTTCATCAAGCATTTGTTTTGCAAGAGGATATGCAGAGGAATGGCTTGTCTCCAAATGTTGTCACATATACAGCATTGATTAATGCCATGTGTAAGGCTAAGAATTTGAAACGAGCAATGGAGTTTTTTGATCAGATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACGTATACTACATTGATCGATGGCTTCTCTCAACAGGGGTTCTTAAATGAAGCTTACGGTGTTCTGAATGAAATGATTGGGAGTGGATTTTCACCTTCGATTGTAACTTACAATGCCCTTATCAATGGATACTGCTTATTAGGGAGGATGGAGGAGGCCATTGGAGTTATACAAGACATGATAGGCAAAGGTTTGTTCCCCGATGTAGTAAGTTATAGTACTATTATAACTGGGTATTGTCGGCATCAGGAATTGGAGAGCGCATTTCGAATGAAGCAGGAGATGGTGGAGAAGGGTGTATCACCTGATGCAGTTACCTATTCATCACTCATTCAAGGTGTCTGTCTGCAAAGAAGACTAGTTGAAGCTTGTGATCTGTTCCAAGAAATGTTAAGCATGGGTATGCGTCCTGATGAATTTACGTACACAACCTTGATCAATGCTTACTGTGTGGAAGGGGACTTAATCAAGGCCCTAGAGTTGAATAATGAAATGATACGAAAAGGTTTCTTACCTGATGTTGTTACATACAGTGTGCTTATTAACGGACTTAACAAACAAGCTCGGACAAGGGAAGCAAAGAGGCTTCTGCTCAAGTTGTTTTACGAGGAGTCTGTTCCCGATGATGTCACATATAATACGCTAATAGAGAACTGCACTAATAGTGAATTTAAGAGCGTGGTGGCCCTTGTAAAGGGATTCTGTATGAAGGGTTTGATGAAAGAAGCAGACCAAGTTTTTGAGACGATGATTAAGAGGAAATACAAGCCTAATGAGGCAGTTTATGATGTTATTATACATGGTCATTGTAGGGGTGGAAGTGTTCAGAAGGCATATAATCTATACAAGGAGATGTTGCATTTCGGTTTCATTCCTCACACTGTGACTGTTATTGCGTTGATTAAAGAACTTTTCACCGAGGGAATGAACAAGGAATTGAATCAAGTCATAGGGAACATGCTTAGAAGCTCTCAGGTTAGTGACGCTGAGCTTGCAAAACTACTTGTTGAAGTCAACCATAAAGAAGGAAATATGGATGCGGTATTTAATGTGCTTAGCGAAATGGCCAAAGATGGCCTCCTTCCAAATAGTGGAGTAGCAGCTTGTGCAGGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

752

Amino Acids

83.99

Weight (kDa)

6.66

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	165 - 214	1.1e-13	PPR repeat family
PPR_long	PF17177	169 - 272	7.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	190 - 249	5e-16	Pentatricopeptide repeat domain
PPR_long	PF17177	191 - 323	3.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	197 - 230	5.9e-06	PPR repeat
PPR	PF01535	204 - 234	1.7e-06	PPR repeat
PPR_2	PF13041	209 - 249	1.3e-10	PPR repeat family
PPR_1	PF12854	232 - 264	3.3e-15	PPR repeat
PPR_2	PF13041	236 - 285	6.3e-20	PPR repeat family
PPR_3	PF13812	239 - 281	1.9e-07	Pentatricopeptide repeat domain
PPR	PF01535	239 - 268	5.4e-09	PPR repeat
PPR_1	PF12854	267 - 300	6.2e-12	PPR repeat
PPR_2	PF13041	271 - 310	2.1e-12	PPR repeat family
PPR	PF01535	274 - 304	1.8e-07	PPR repeat
PPR_long	PF17177	289 - 385	6.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	295 - 346	6.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	302 - 334	2e-09	PPR repeat
PPR_2	PF13041	306 - 355	2.8e-18	PPR repeat family
PPR_3	PF13812	330 - 381	9.4e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	337 - 370	1.7e-13	PPR repeat
PPR_2	PF13041	341 - 389	1.1e-18	PPR repeat family
PPR	PF01535	344 - 374	1.2e-07	PPR repeat
TPR_24	PF23276	345 - 437	8.7e-08	Fungal tetratrico peptide repeats
PPR_long	PF17177	358 - 447	3.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	372 - 423	4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	372 - 404	4.9e-10	PPR repeat
PPR_2	PF13041	380 - 424	1.4e-12	PPR repeat family
PPR	PF01535	380 - 409	6.7e-07	PPR repeat
PPR_long	PF17177	394 - 491	4.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	408 - 439	4.4e-10	PPR repeat
PPR_2	PF13041	411 - 460	1.6e-16	PPR repeat family
PPR	PF01535	414 - 444	5.8e-09	PPR repeat
PPR_3	PF13812	435 - 491	6.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	442 - 475	8.7e-11	PPR repeat
PPR_2	PF13041	446 - 494	5.8e-18	PPR repeat family
PPR	PF01535	449 - 479	5.5e-06	PPR repeat
PPR_long	PF17177	462 - 561	2.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	477 - 509	7.3e-10	PPR repeat
PPR_2	PF13041	488 - 529	8.3e-12	PPR repeat family
PPR_3	PF13812	505 - 561	3.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	512 - 544	2.5e-09	PPR repeat
PPR	PF01535	519 - 549	2.3e-07	PPR repeat
PPR_2	PF13041	520 - 564	8.9e-15	PPR repeat family
PPR_2	PF13041	608 - 650	1e-08	PPR repeat family
PPR_1	PF12854	634 - 664	7.3e-06	PPR repeat
PPR_2	PF13041	636 - 683	1.6e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	723, 828, 1364
AccB7I	CCANNNNNTGG	1 cut(s)	2228
AccBSI	CCGCTC	1 cut(s)	293
AccI	GTMKAC	2 cut(s)	611, 1142
AccII	CGCG	1 cut(s)	305
AciI	CCGC	9 cut(s)	63, 220, 271, 291, 305, 398, 642, 647, 2177
AclWI	GGATC	1 cut(s)	780
AcoI	YGGCCR	1 cut(s)	2202
AcsI	RAATTY	8 cut(s)	196, 436, 554, 652, 814, 1072, 1553, 1805
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	2020
AfaI	GTAC	3 cut(s)	501, 1357, 1562
AfiI	CCNNNNNNNGG	4 cut(s)	208, 307, 1831, 2228
AhlI	ACTAGT	1 cut(s)	1495
AjnI	CCWGG	2 cut(s)	249, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	4 cut(s)	601, 866, 1023, 1874
AlwI	GGATC	1 cut(s)	780
AoxI	GGCC	5 cut(s)	1293, 1608, 1821, 2202, 2212
ApeKI	GCWGC	3 cut(s)	146, 381, 2237
ApoI	RAATTY	8 cut(s)	196, 436, 554, 652, 814, 1072, 1553, 1805
ArsI	GACNNNNNNTTYG	2 cut(s)	1859, 1891
AseI	ATTAAT	1 cut(s)	1050
AspLEI	GCGC	2 cut(s)	256, 1400
AspS9I	GGNCC	4 cut(s)	48, 883, 1609, 1822
AsuHPI	GGTGA	7 cut(s)	259, 427, 692, 937, 1221, 1431, 2044
AsuII	TTCGAA	1 cut(s)	1405
AvaII	GGWCC	2 cut(s)	48, 883
BalI	TGGCCA	1 cut(s)	2204
BanII	GRGCYC	2 cut(s)	214, 395
BbsI	GAAGAC	1 cut(s)	1498
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	158, 368, 2249
BccI	CCATC	5 cut(s)	329, 1151, 1279, 1414, 2204
BciT130I	CCWGG	2 cut(s)	251, 495
BciVI	GTATCC	1 cut(s)	1259
BclI	TGATCA	2 cut(s)	1099, 1572
BcoDI	GTCTC	4 cut(s)	601, 866, 1023, 1874
BcuI	ACTAGT	1 cut(s)	1495
BfaI	CTAG	2 cut(s)	1496, 1613
BfoI	RGCGCY	1 cut(s)	257
BfuI	GTATCC	1 cut(s)	1259
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	63, 147, 382, 2238
BlpI	GCTNAGC	2 cut(s)	2124, 2192
BlsI	GCNGC	4 cut(s)	64, 148, 383, 2239
BmcAI	AGTACT	1 cut(s)	1357
Bme1390I	CCNGG	2 cut(s)	251, 495
Bme18I	GGWCC	2 cut(s)	48, 883
BmgT120I	GGNCC	4 cut(s)	48, 883, 1609, 1822
BmiI	GGNNCC	2 cut(s)	50, 810
BmrFI	CCNGG	2 cut(s)	251, 495
BmrI	ACTGGG	2 cut(s)	217, 1377
BmsI	GCATC	7 cut(s)	514, 727, 757, 1095, 1390, 1435, 2164
BmuI	ACTGGG	2 cut(s)	217, 1377
BpiI	GAAGAC	1 cut(s)	1498
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
Bpu1102I	GCTNAGC	2 cut(s)	2124, 2192
Bpu14I	TTCGAA	1 cut(s)	1405
BpuEI	CTTGAG	2 cut(s)	149, 1715
Bsa29I	ATCGAT	1 cut(s)	1155
BsaAI	YACGTR	1 cut(s)	1560
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	789, 2055
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 307, 1831, 2228
Bse1I	ACTGG	4 cut(s)	50, 212, 934, 1372
Bse3DI	GCAATG	2 cut(s)	459, 1092
BseBI	CCWGG	2 cut(s)	251, 495
BseCI	ATCGAT	1 cut(s)	1155
BseDI	CCNNGG	2 cut(s)	789, 2055
BseGI	GGATG	4 cut(s)	261, 870, 1290, 2179
BseLI	CCNNNNNNNGG	4 cut(s)	208, 307, 1831, 2228
BseMI	GCAATG	2 cut(s)	459, 1092
BseMII	CTCAG	2 cut(s)	2115, 2123
BseNI	ACTGG	4 cut(s)	50, 212, 934, 1372
BseRI	GAGGAG	4 cut(s)	152, 578, 1304, 1760
BseXI	GCAGC	3 cut(s)	158, 368, 2249
BsgI	GTGCAG	1 cut(s)	1777
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	5 cut(s)	1295, 1610, 1823, 2204, 2214
BshVI	ATCGAT	1 cut(s)	1155
BsiHKAI	GWGCWC	1 cut(s)	395
BslFI	GGGAC	3 cut(s)	34, 154, 1610
BslI	CCNNNNNNNGG	4 cut(s)	208, 307, 1831, 2228
BsmAI	GTCTC	4 cut(s)	601, 866, 1023, 1874
BsmBI	CGTCTC	1 cut(s)	1874
BsmFI	GGGAC	3 cut(s)	34, 154, 1610
BsnI	GGCC	5 cut(s)	1295, 1610, 1823, 2204, 2214
Bso31I	GGTCTC	1 cut(s)	601
Bsp119I	TTCGAA	1 cut(s)	1405
Bsp1286I	GDGCHC	2 cut(s)	214, 395
Bsp143I	GATC	5 cut(s)	785, 1099, 1152, 1510, 1572
Bsp1720I	GCTNAGC	2 cut(s)	2124, 2192
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	9 cut(s)	63, 220, 271, 291, 305, 398, 642, 647, 2177
BspANI	GGCC	5 cut(s)	1295, 1610, 1823, 2204, 2214
BspCNI	CTCAG	2 cut(s)	2116, 2122
BspDI	ATCGAT	1 cut(s)	1155
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	50, 810
BspPI	GGATC	1 cut(s)	780
BspT104I	TTCGAA	1 cut(s)	1405
BspTNI	GGTCTC	1 cut(s)	601
BsrBI	CCGCTC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	459, 1092
BsrI	ACTGG	4 cut(s)	50, 212, 934, 1372
BssECI	CCNNGG	2 cut(s)	789, 2055
BssMI	GATC	5 cut(s)	785, 1099, 1152, 1510, 1572
BssNAI	GTATAC	2 cut(s)	612, 1143
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	789
Bst1107I	GTATAC	2 cut(s)	612, 1143
Bst2UI	CCWGG	2 cut(s)	251, 495
Bst4CI	ACNGT	8 cut(s)	328, 504, 780, 1196, 1586, 1670, 2020, 2026
Bst6I	CTCTTC	1 cut(s)	749
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	2243
BstBAI	YACGTR	1 cut(s)	1560
BstBI	TTCGAA	1 cut(s)	1405
BstC8I	GCNNGC	2 cut(s)	964, 2130
BstDEI	CTNAG	6 cut(s)	464, 1068, 2099, 2109, 2124, 2192
BstDSI	CCRYGG	1 cut(s)	789
BstENI	CCTNNNNNAGG	2 cut(s)	305, 1829
BstF5I	GGATG	4 cut(s)	261, 870, 1290, 2179
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	256, 1400
BstKTI	GATC	5 cut(s)	788, 1102, 1155, 1513, 1575
BstMAI	GTCTC	4 cut(s)	601, 866, 1023, 1874
BstMBI	GATC	5 cut(s)	785, 1099, 1152, 1510, 1572
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 77, 390, 963, 2129, 2243
BstNI	CCWGG	2 cut(s)	251, 495
BstNSI	RCATGY	1 cut(s)	2098
BstSCI	CCNGG	2 cut(s)	249, 493
BstSNI	TACGTA	1 cut(s)	1560
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	158, 368, 2249
BstV2I	GAAGAC	1 cut(s)	1498
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
BstZ17I	GTATAC	2 cut(s)	612, 1143
Bsu15I	ATCGAT	1 cut(s)	1155
BsuI	GTATCC	1 cut(s)	1259
BsuRI	GGCC	5 cut(s)	1295, 1610, 1823, 2204, 2214
BsuTUI	ATCGAT	1 cut(s)	1155
BtgI	CCRYGG	1 cut(s)	789
BtsCI	GGATG	4 cut(s)	261, 870, 1290, 2179
BtsIMutI	CAGTG	4 cut(s)	43, 362, 1675, 2016
Cac8I	GCNNGC	2 cut(s)	964, 2130
CfoI	GCGC	2 cut(s)	256, 1400
Cfr13I	GGNCC	4 cut(s)	48, 883, 1609, 1822
ClaI	ATCGAT	1 cut(s)	1155
CseI	GACGC	3 cut(s)	68, 1532, 2129
Csp6I	GTAC	3 cut(s)	500, 1356, 1561
CviAII	CATG	9 cut(s)	240, 482, 790, 895, 1057, 1315, 1534, 1937, 2095
CviQI	GTAC	3 cut(s)	500, 1356, 1561
DdeI	CTNAG	6 cut(s)	464, 1068, 2099, 2109, 2124, 2192
DpnI	GATC	5 cut(s)	787, 1101, 1154, 1512, 1574
DpnII	GATC	5 cut(s)	785, 1099, 1152, 1510, 1572
DraIII	CACNNNGTG	1 cut(s)	2020
EaeI	YGGCCR	1 cut(s)	2202
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
Ecl136II	GAGCTC	1 cut(s)	393
Eco105I	TACGTA	1 cut(s)	1560
Eco130I	CCWWGG	1 cut(s)	789
Eco24I	GRGCYC	2 cut(s)	214, 395
Eco31I	GGTCTC	1 cut(s)	601
Eco47I	GGWCC	2 cut(s)	48, 883
Eco53kI	GAGCTC	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	393
EcoNI	CCTNNNNNAGG	2 cut(s)	305, 1829
EcoO109I	RGGNCCY	2 cut(s)	883, 1609
EcoRII	CCWGG	2 cut(s)	249, 493
EcoT14I	CCWWGG	1 cut(s)	789
EcoT38I	GRGCYC	2 cut(s)	214, 395
ErhI	CCWWGG	1 cut(s)	789
Esp3I	CGTCTC	1 cut(s)	1874
FaeI	CATG	9 cut(s)	243, 485, 793, 898, 1060, 1318, 1537, 1940, 2098
FaqI	GGGAC	3 cut(s)	34, 154, 1610
FatI	CATG	9 cut(s)	239, 481, 789, 894, 1056, 1314, 1533, 1936, 2094
FauI	CCCGC	3 cut(s)	278, 635, 640
FbaI	TGATCA	2 cut(s)	1099, 1572
FblI	GTMKAC	2 cut(s)	611, 1142
Fnu4HI	GCNGC	4 cut(s)	63, 147, 382, 2238
FokI	GGATG	4 cut(s)	248, 877, 1297, 2186
FriOI	GRGCYC	2 cut(s)	214, 395
Fsp4HI	GCNGC	4 cut(s)	63, 147, 382, 2238
FspBI	CTAG	2 cut(s)	1496, 1613
GlaI	GCGC	2 cut(s)	255, 1399
GluI	GCNGC	4 cut(s)	63, 147, 382, 2238
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	5 cut(s)	1295, 1610, 1823, 2204, 2214
HgaI	GACGC	3 cut(s)	68, 1532, 2129
HhaI	GCGC	2 cut(s)	256, 1400
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	9 cut(s)	243, 485, 793, 898, 1060, 1318, 1537, 1940, 2098
Hin6I	GCGC	2 cut(s)	254, 1398
HinP1I	GCGC	2 cut(s)	254, 1398
HincII	GTYRAC	1 cut(s)	2152
HindII	GTYRAC	1 cut(s)	2152
HindIII	AAGCTT	2 cut(s)	1188, 1503
HinfI	GANTC	4 cut(s)	368, 1748, 1836, 2077
HphI	GGTGA	7 cut(s)	259, 427, 692, 937, 1221, 1431, 2044
Hpy166II	GTNNAC	5 cut(s)	500, 612, 1143, 1563, 2152
Hpy188I	TCNGA	7 cut(s)	58, 603, 785, 1104, 1203, 1704, 1965
Hpy188III	TCNNGA	6 cut(s)	10, 854, 917, 1385, 1547, 1757
Hpy8I	GTNNAC	5 cut(s)	500, 612, 1143, 1563, 2152
Hpy99I	CGWCG	2 cut(s)	62, 332
HpyCH4III	ACNGT	8 cut(s)	328, 504, 780, 1196, 1586, 1670, 2020, 2026
HpyCH4IV	ACGT	3 cut(s)	312, 1139, 1559
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 77, 390, 963, 2129, 2243
HpyF3I	CTNAG	6 cut(s)	464, 1068, 2099, 2109, 2124, 2192
HpySE526I	ACGT	3 cut(s)	312, 1139, 1559
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	9 cut(s)	243, 485, 793, 898, 1060, 1318, 1537, 1940, 2098
HspAI	GCGC	2 cut(s)	254, 1398
Ksp22I	TGATCA	2 cut(s)	1099, 1572
Kzo9I	GATC	5 cut(s)	785, 1099, 1152, 1510, 1572
LmnI	GCTCC	2 cut(s)	261, 808
Lsp1109I	GCAGC	3 cut(s)	158, 368, 2249
LweI	GCATC	7 cut(s)	514, 727, 757, 1095, 1390, 1435, 2164
MaeI	CTAG	2 cut(s)	1496, 1613
MaeII	ACGT	3 cut(s)	312, 1139, 1559
MaeIII	GTNAC	9 cut(s)	715, 925, 1030, 1240, 1450, 1660, 1765, 2020, 2117
MalI	GATC	5 cut(s)	787, 1101, 1154, 1512, 1574
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	5 cut(s)	785, 1099, 1152, 1510, 1572
MboII	GAAGA	3 cut(s)	117, 766, 1503
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	2 cut(s)	214, 395
MlsI	TGGCCA	1 cut(s)	2204
MluNI	TGGCCA	1 cut(s)	2204
MlyI	GAGTC	2 cut(s)	362, 1757
MmeI	TCCRAC	1 cut(s)	81
Mox20I	TGGCCA	1 cut(s)	2204
MscI	TGGCCA	1 cut(s)	2204
MslI	CAYNNNNRTG	2 cut(s)	244, 1538
Msp20I	TGGCCA	1 cut(s)	2204
MspR9I	CCNGG	2 cut(s)	251, 495
MvaI	CCWGG	2 cut(s)	251, 495
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	6 cut(s)	68, 77, 390, 963, 2129, 2243
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	5 cut(s)	785, 1099, 1152, 1510, 1572
NlaIII	CATG	9 cut(s)	243, 485, 793, 898, 1060, 1318, 1537, 1940, 2098
NlaIV	GGNNCC	2 cut(s)	50, 810
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	5 cut(s)	925, 1030, 1765, 2020, 2117
NspI	RCATGY	1 cut(s)	2098
NspV	TTCGAA	1 cut(s)	1405
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	1836, 2077
PflFI	GACNNNGTC	1 cut(s)	1122
PflMI	CCANNNNNTGG	1 cut(s)	2228
PkrI	GCNGC	4 cut(s)	64, 148, 383, 2239
PleI	GAGTC	2 cut(s)	362, 1756
PpsI	GAGTC	2 cut(s)	362, 1756
Ppu21I	YACGTR	1 cut(s)	1560
PpuMI	RGGWCCY	1 cut(s)	883
PshBI	ATTAAT	1 cut(s)	1050
PsiI	TTATAA	3 cut(s)	723, 828, 1364
Psp124BI	GAGCTC	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	883
Psp6I	CCWGG	2 cut(s)	249, 493
PspGI	CCWGG	2 cut(s)	249, 493
PspN4I	GGNNCC	2 cut(s)	50, 810
PspPI	GGNCC	4 cut(s)	48, 883, 1609, 1822
PspPPI	RGGWCCY	1 cut(s)	883
PsuI	RGATCY	1 cut(s)	785
PsyI	GACNNNGTC	1 cut(s)	1122
RsaI	GTAC	3 cut(s)	501, 1357, 1562
RsaNI	GTAC	3 cut(s)	500, 1356, 1561
RseI	CAYNNNNRTG	2 cut(s)	244, 1538
SacI	GAGCTC	1 cut(s)	395
SatI	GCNGC	4 cut(s)	63, 147, 382, 2238
Sau3AI	GATC	5 cut(s)	785, 1099, 1152, 1510, 1572
Sau96I	GGNCC	4 cut(s)	48, 883, 1609, 1822
ScaI	AGTACT	1 cut(s)	1357
SchI	GAGTC	2 cut(s)	362, 1757
ScrFI	CCNGG	2 cut(s)	251, 495
SduI	GDGCHC	2 cut(s)	214, 395
SfaNI	GCATC	7 cut(s)	514, 727, 757, 1095, 1390, 1435, 2164
SfuI	TTCGAA	1 cut(s)	1405
SinI	GGWCC	2 cut(s)	48, 883
SmiMI	CAYNNNNRTG	2 cut(s)	244, 1538
SmlI	CTYRAG	2 cut(s)	164, 1730
SmoI	CTYRAG	2 cut(s)	164, 1730
SnaBI	TACGTA	1 cut(s)	1560
SpeI	ACTAGT	1 cut(s)	1495
SsiI	CCGC	9 cut(s)	63, 220, 271, 291, 305, 398, 642, 647, 2177
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	1496, 1613
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	249, 493
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	8 cut(s)	328, 504, 780, 1196, 1586, 1670, 2020, 2026
TaiI	ACGT	3 cut(s)	315, 1142, 1562
TaqI	TCGA	8 cut(s)	177, 214, 330, 389, 853, 1155, 1235, 1405
TatI	WGTACW	2 cut(s)	499, 1355
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	1836, 2077
TscAI	CASTG	4 cut(s)	50, 362, 1675, 2023
TseFI	GTSAC	5 cut(s)	925, 1030, 1765, 2020, 2117
TseI	GCWGC	3 cut(s)	146, 381, 2237
Tsp45I	GTSAC	5 cut(s)	925, 1030, 1765, 2020, 2117
TspGWI	ACGGA	1 cut(s)	1698
TspRI	CASTG	4 cut(s)	50, 362, 1675, 2023
Tth111I	GACNNNGTC	1 cut(s)	1122
Van91I	CCANNNNNTGG	1 cut(s)	2228
VpaK11BI	GGWCC	2 cut(s)	48, 883
VspI	ATTAAT	1 cut(s)	1050
XagI	CCTNNNNNAGG	2 cut(s)	305, 1829
XapI	RAATTY	8 cut(s)	196, 436, 554, 652, 814, 1072, 1553, 1805
XceI	RCATGY	1 cut(s)	2098
XmiI	GTMKAC	2 cut(s)	611, 1142
XspI	CTAG	2 cut(s)	1496, 1613
ZrmI	AGTACT	1 cut(s)	1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.