Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

14512413 .. 14514179

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG092000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGCCCGGTGTGCTTTCGTATAATGCGATTTTAGATGCTGTGATTAGGTCTAGAGGGTCTGCTCAGTTTGCTGAGGAGGTTTTTAGTGAGATGATTAGGAATGGGGTTTCGCCGAATGTGTATACGTATAACATTTTGATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTGTTGTACTTTTGGAGTGAAATGGAGAGGAATGGGTGTCTGCCGAATGTGGTTACGTATAATACGTTGATTGATGCTTATTGTAAGTTGAAGAGGATGGATGACGCGTTCGGATTGCTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTGGTGATTAATGGGTTGTGTCGAGAAGGGAGGATGAATGAGACTGGTCAGATTCTTGAGGAGATGAAAAGGAAGGGTTTTGTTCCTGACGAGGTGACGAATAATACACTCATTAGTGGGTATTGCAAGGAAGGTAATTTTCACCAAGCACTTGTGTTGCAAGAGGAGATGCGGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCCTTGATCAATGCCATGTGTAAGGCTAAGAATTTGAATCGAGCAATGGAGTTTTTTGAGCAGATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACGTATACTACATTGATAGATGGCTTTGCCCAACAAGGGTTCTTAAATGAAGCTTACGGTCTTCTGAATGAAATGGTTGGGCGTGGATTTTCTCCTTCAGTTGTGACTTACAATGCCCTTATCAATGGATACTGCTTATTAGGCAGGATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGATGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCTGTTACCTATTCATCACTAATTCAAGGTGTCTCTCAGCAAGGGAGACTAGTTGACGCTTGTGATCTGTTCCAAGAAATGATAAGTATGGGTTTGCATCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCAGTTGAATGATGAAATGATAAAGAAAGGTTTCCTGCCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAAGCTCGGACAAGAGAAGCAAAGAAGCTTCTACTGAAGTTGTTCTATGATAACTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACAAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATAAAGAAGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGGAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACTGTTATTGCACTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGCGAACACTCTGAGGAGCTGTGAGCTTACTGATGCTGAGCTTGCAAAGCTGCTTGTTGAAACAAATCATAAAGAAGGAAATTTGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTCCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

588

Amino Acids

65.45

Weight (kDa)

5.34

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 50	7.3e-13	PPR repeat family
PPR_3	PF13812	4 - 48	1.2e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	20 - 109	1.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	27 - 86	2.2e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	34 - 66	3.3e-06	PPR repeat
PPR_2	PF13041	40 - 84	5.1e-14	PPR repeat family
PPR	PF01535	41 - 71	1.3e-06	PPR repeat
PPR_3	PF13812	64 - 118	5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	69 - 101	5.5e-14	PPR repeat
PPR_2	PF13041	73 - 122	5.8e-19	PPR repeat family
PPR	PF01535	76 - 105	3.7e-08	PPR repeat
PPR_1	PF12854	104 - 137	2.1e-10	PPR repeat
PPR_2	PF13041	108 - 151	1.9e-12	PPR repeat family
PPR	PF01535	111 - 141	5.2e-07	PPR repeat
PPR_long	PF17177	127 - 240	1.7e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	132 - 190	6.5e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	139 - 172	4.8e-10	PPR repeat
PPR_2	PF13041	143 - 192	1.6e-18	PPR repeat family
PPR	PF01535	149 - 176	1.9e-06	PPR repeat
PPR_3	PF13812	167 - 218	4.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	174 - 207	2e-13	PPR repeat
PPR_2	PF13041	178 - 226	4.6e-19	PPR repeat family
PPR	PF01535	181 - 211	1.8e-07	PPR repeat
TPR_24	PF23276	182 - 274	2.2e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	197 - 288	1.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	209 - 260	7.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	209 - 242	5.4e-11	PPR repeat
PPR	PF01535	217 - 246	1.7e-07	PPR repeat
PPR_2	PF13041	217 - 261	2.2e-14	PPR repeat family
PPR_long	PF17177	231 - 334	9.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	244 - 277	2.3e-11	PPR repeat
PPR_2	PF13041	248 - 297	9.3e-18	PPR repeat family
PPR	PF01535	251 - 281	5.9e-09	PPR repeat
PPR_3	PF13812	272 - 328	2.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	279 - 312	3.4e-10	PPR repeat
PPR_2	PF13041	283 - 330	2.3e-16	PPR repeat family
PPR_long	PF17177	299 - 397	1.3e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	314 - 346	3.7e-09	PPR repeat
PPR	PF01535	321 - 351	2.5e-06	PPR repeat
PPR_2	PF13041	323 - 367	1.5e-13	PPR repeat family
PPR_3	PF13812	342 - 398	2.1e-10	Pentatricopeptide repeat domain
TPR_24	PF23276	344 - 437	1.2e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	349 - 381	9.4e-14	PPR repeat
PPR	PF01535	356 - 386	2.5e-08	PPR repeat
PPR_2	PF13041	356 - 401	5.9e-18	PPR repeat family
PPR_1	PF12854	384 - 413	6.8e-06	PPR repeat
PPR_1	PF12854	471 - 501	7.4e-07	PPR repeat
PPR_2	PF13041	473 - 520	7.8e-09	PPR repeat family
PPR	PF01535	477 - 506	3.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1739
AccI	GTMKAC	2 cut(s)	122, 653
AccII	CGCG	1 cut(s)	281
AciI	CCGC	3 cut(s)	155, 158, 514
AcoI	YGGCCR	1 cut(s)	1713
AcsI	RAATTY	5 cut(s)	163, 583, 1064, 1316, 1678
AcuI	CTGAAG	3 cut(s)	729, 1109, 1262
AfaI	GTAC	4 cut(s)	182, 819, 868, 1493
AfeI	AGCGCT	1 cut(s)	1750
AfiI	CCNNNNNNNGG	3 cut(s)	684, 1342, 1739
AflIII	ACRYGT	1 cut(s)	279
AhlI	ACTAGT	1 cut(s)	1006
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	8 cut(s)	701, 1211, 1234, 1302, 1617, 1624, 1639, 1648
AluI	AGCT	8 cut(s)	701, 1211, 1234, 1302, 1617, 1624, 1639, 1648
Alw26I	GTCTC	5 cut(s)	377, 534, 994, 997, 1730
Aor51HI	AGCGCT	1 cut(s)	1750
AoxI	GGCC	1 cut(s)	1713
ApeKI	GCWGC	2 cut(s)	1302, 1648
ApoI	RAATTY	5 cut(s)	163, 583, 1064, 1316, 1678
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	2 cut(s)	1154, 1247
AspLEI	GCGC	1 cut(s)	1751
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	5 cut(s)	358, 448, 476, 942, 1718
BalI	TGGCCA	1 cut(s)	1715
BbsI	GAAGAC	1 cut(s)	701
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	1289, 1635
BccI	CCATC	7 cut(s)	265, 295, 662, 790, 919, 925, 1715
BciVI	GTATCC	1 cut(s)	770
BclI	TGATCA	2 cut(s)	558, 1083
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	5 cut(s)	377, 534, 994, 997, 1730
BcuI	ACTAGT	1 cut(s)	1006
BfaI	CTAG	2 cut(s)	51, 1007
BfmI	CTRYAG	1 cut(s)	1177
BfoI	RGCGCY	1 cut(s)	1752
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	3 cut(s)	156, 1303, 1649
BlpI	GCTNAGC	1 cut(s)	1635
BlsI	GCNGC	3 cut(s)	157, 1304, 1650
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	9 cut(s)	25, 238, 501, 606, 901, 946, 1063, 1621, 1675
BmuI	ACTGGG	1 cut(s)	888
BpiI	GAAGAC	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	923
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu1102I	GCTNAGC	1 cut(s)	1635
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	6
Bsa29I	ATCGAT	1 cut(s)	299
BsaAI	YACGTR	2 cut(s)	126, 231
BsaI	GGTCTC	1 cut(s)	1730
BsaJI	CCNNGG	2 cut(s)	1702, 1716
Bsc4I	CCNNNNNNNGG	3 cut(s)	684, 1342, 1739
Bse1I	ACTGG	3 cut(s)	391, 883, 906
Bse3DI	GCAATG	2 cut(s)	603, 813
BseCI	ATCGAT	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	1702, 1716
BseGI	GGATG	7 cut(s)	276, 280, 381, 801, 1054, 1690, 1726
BseLI	CCNNNNNNNGG	3 cut(s)	684, 1342, 1739
BseMI	GCAATG	2 cut(s)	603, 813
BseMII	CTCAG	8 cut(s)	63, 77, 284, 1007, 1557, 1577, 1601, 1626
BseNI	ACTGG	3 cut(s)	391, 883, 906
BseRI	GAGGAG	4 cut(s)	89, 416, 521, 1627
BseXI	GCAGC	2 cut(s)	1289, 1635
BsgI	GTGCAG	1 cut(s)	1288
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	1715
BshVI	ATCGAT	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	1250
BslI	CCNNNNNNNGG	3 cut(s)	684, 1342, 1739
BsmAI	GTCTC	5 cut(s)	377, 534, 994, 997, 1730
BsmFI	GGGAC	1 cut(s)	1250
BsmI	GAATGC	1 cut(s)	911
BsnI	GGCC	1 cut(s)	1715
Bso31I	GGTCTC	1 cut(s)	1730
Bsp1407I	TGTACA	2 cut(s)	817, 1491
Bsp143I	GATC	5 cut(s)	296, 558, 1021, 1083, 1378
Bsp1720I	GCTNAGC	1 cut(s)	1635
BspACI	CCGC	3 cut(s)	155, 158, 514
BspANI	GGCC	1 cut(s)	1715
BspCNI	CTCAG	8 cut(s)	64, 76, 285, 1006, 1558, 1578, 1602, 1627
BspDI	ATCGAT	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	321
BspQI	GCTCTTC	1 cut(s)	1128
BspTNI	GGTCTC	1 cut(s)	1730
BsrDI	GCAATG	2 cut(s)	603, 813
BsrGI	TGTACA	2 cut(s)	817, 1491
BsrI	ACTGG	3 cut(s)	391, 883, 906
BssECI	CCNNGG	2 cut(s)	1702, 1716
BssMI	GATC	5 cut(s)	296, 558, 1021, 1083, 1378
BssNAI	GTATAC	2 cut(s)	123, 654
BssT1I	CCWWGG	2 cut(s)	1702, 1716
Bst1107I	GTATAC	2 cut(s)	123, 654
Bst4CI	ACNGT	5 cut(s)	707, 1181, 1396, 1531, 1537
Bst6I	CTCTTC	3 cut(s)	260, 795, 1128
BstAUI	TGTACA	2 cut(s)	817, 1491
BstBAI	YACGTR	2 cut(s)	126, 231
BstC8I	GCNNGC	2 cut(s)	1641, 1747
BstDEI	CTNAG	9 cut(s)	63, 72, 293, 579, 993, 1566, 1586, 1610, 1635
BstENI	CCTNNNNNAGG	1 cut(s)	1340
BstF5I	GGATG	7 cut(s)	276, 280, 381, 801, 1054, 1690, 1726
BstFNI	CGCG	1 cut(s)	281
BstH2I	RGCGCY	1 cut(s)	1752
BstHHI	GCGC	1 cut(s)	1751
BstKTI	GATC	5 cut(s)	299, 561, 1024, 1086, 1381
BstMAI	GTCTC	5 cut(s)	377, 534, 994, 997, 1730
BstMBI	GATC	5 cut(s)	296, 558, 1021, 1083, 1378
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 68, 789, 1640, 1645
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	1177
BstSNI	TACGTA	2 cut(s)	126, 231
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	1289, 1635
BstV2I	GAAGAC	1 cut(s)	701
BstZ17I	GTATAC	2 cut(s)	123, 654
Bsu15I	ATCGAT	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	770
BsuRI	GGCC	1 cut(s)	1715
BsuTUI	ATCGAT	1 cut(s)	299
BtsCI	GGATG	7 cut(s)	276, 280, 381, 801, 1054, 1690, 1726
BtsIMutI	CAGTG	6 cut(s)	157, 876, 1186, 1401, 1544, 1563
Cac8I	GCNNGC	2 cut(s)	1641, 1747
CfoI	GCGC	1 cut(s)	1751
ClaI	ATCGAT	1 cut(s)	299
CseI	GACGC	2 cut(s)	287, 1022
Csp6I	GTAC	4 cut(s)	181, 818, 867, 1492
CviAII	CATG	3 cut(s)	568, 1354, 1448
CviQI	GTAC	4 cut(s)	181, 818, 867, 1492
DdeI	CTNAG	9 cut(s)	63, 72, 293, 579, 993, 1566, 1586, 1610, 1635
DpnI	GATC	5 cut(s)	298, 560, 1023, 1085, 1380
DpnII	GATC	5 cut(s)	296, 558, 1021, 1083, 1378
EaeI	YGGCCR	1 cut(s)	1713
Eam1104I	CTCTTC	3 cut(s)	260, 795, 1128
EarI	CTCTTC	3 cut(s)	260, 795, 1128
Eco105I	TACGTA	2 cut(s)	126, 231
Eco130I	CCWWGG	2 cut(s)	1702, 1716
Eco31I	GGTCTC	1 cut(s)	1730
Eco47III	AGCGCT	1 cut(s)	1750
Eco57I	CTGAAG	3 cut(s)	729, 1109, 1262
EcoNI	CCTNNNNNAGG	1 cut(s)	1340
EcoRI	GAATTC	1 cut(s)	1064
EcoT14I	CCWWGG	2 cut(s)	1702, 1716
ErhI	CCWWGG	2 cut(s)	1702, 1716
FaeI	CATG	3 cut(s)	571, 1357, 1451
FaqI	GGGAC	1 cut(s)	1250
FatI	CATG	3 cut(s)	567, 1353, 1447
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	2 cut(s)	558, 1083
FblI	GTMKAC	2 cut(s)	122, 653
Fnu4HI	GCNGC	3 cut(s)	156, 1303, 1649
FokI	GGATG	7 cut(s)	283, 287, 388, 808, 1041, 1697, 1733
Fsp4HI	GCNGC	3 cut(s)	156, 1303, 1649
FspBI	CTAG	2 cut(s)	51, 1007
GlaI	GCGC	1 cut(s)	1750
GluI	GCNGC	3 cut(s)	156, 1303, 1649
GsuI	CTGGAG	1 cut(s)	923
HaeII	RGCGCY	1 cut(s)	1752
HaeIII	GGCC	1 cut(s)	1715
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	2 cut(s)	287, 1022
HhaI	GCGC	1 cut(s)	1751
Hin1II	CATG	3 cut(s)	571, 1357, 1451
Hin6I	GCGC	1 cut(s)	1749
HinP1I	GCGC	1 cut(s)	1749
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HindIII	AAGCTT	2 cut(s)	699, 1232
HinfI	GANTC	5 cut(s)	394, 589, 1347, 1486, 1588
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	5 cut(s)	358, 448, 476, 942, 1718
Hpy166II	GTNNAC	3 cut(s)	123, 654, 1012
Hpy188I	TCNGA	6 cut(s)	287, 393, 534, 714, 1215, 1611
Hpy188III	TCNNGA	7 cut(s)	51, 365, 398, 428, 896, 1058, 1475
Hpy8I	GTNNAC	3 cut(s)	123, 654, 1012
HpyCH4III	ACNGT	5 cut(s)	707, 1181, 1396, 1531, 1537
HpyCH4IV	ACGT	5 cut(s)	125, 230, 239, 650, 1437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 68, 789, 1640, 1645
HpyF3I	CTNAG	9 cut(s)	63, 72, 293, 579, 993, 1566, 1586, 1610, 1635
HpySE526I	ACGT	5 cut(s)	125, 230, 239, 650, 1437
Hsp92II	CATG	3 cut(s)	571, 1357, 1451
HspAI	GCGC	1 cut(s)	1749
Ksp22I	TGATCA	2 cut(s)	558, 1083
Kzo9I	GATC	5 cut(s)	296, 558, 1021, 1083, 1378
LguI	GCTCTTC	1 cut(s)	1128
LmnI	GCTCC	4 cut(s)	319, 1424, 1614, 1742
Lsp1109I	GCAGC	2 cut(s)	1289, 1635
LweI	GCATC	9 cut(s)	25, 238, 501, 606, 901, 946, 1063, 1621, 1675
MaeI	CTAG	2 cut(s)	51, 1007
MaeII	ACGT	5 cut(s)	125, 230, 239, 650, 1437
MaeIII	GTNAC	8 cut(s)	226, 436, 541, 751, 961, 1171, 1276, 1531
MalI	GATC	5 cut(s)	298, 560, 1023, 1085, 1380
MboI	GATC	5 cut(s)	296, 558, 1021, 1083, 1378
MboII	GAAGA	7 cut(s)	277, 701, 812, 934, 1115, 1417, 1511
MlsI	TGGCCA	1 cut(s)	1715
MluCI	AATT	9 cut(s)	163, 325, 478, 583, 813, 978, 1064, 1316, 1678
MluI	ACGCGT	1 cut(s)	279
MluNI	TGGCCA	1 cut(s)	1715
MlyI	GAGTC	1 cut(s)	1597
Mox20I	TGGCCA	1 cut(s)	1715
MroXI	GAANNNNTTC	2 cut(s)	1154, 1247
MscI	TGGCCA	1 cut(s)	1715
MseI	TTAA	6 cut(s)	351, 692, 1200, 1320, 1551, 1695
MslI	CAYNNNNRTG	1 cut(s)	1059
Msp20I	TGGCCA	1 cut(s)	1715
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	911
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	5 cut(s)	10, 68, 789, 1640, 1645
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	5 cut(s)	296, 558, 1021, 1083, 1378
NlaIII	CATG	3 cut(s)	571, 1357, 1451
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	6 cut(s)	436, 541, 751, 1171, 1276, 1531
PciSI	GCTCTTC	1 cut(s)	1128
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 236
PctI	GAATGC	1 cut(s)	911
PdmI	GAANNNNTTC	2 cut(s)	1154, 1247
PfeI	GAWTC	4 cut(s)	394, 589, 1347, 1486
PflFI	GACNNNGTC	1 cut(s)	633
PflMI	CCANNNNNTGG	1 cut(s)	1739
PkrI	GCNGC	3 cut(s)	157, 1304, 1650
PleI	GAGTC	1 cut(s)	1596
PpsI	GAGTC	1 cut(s)	1596
Ppu21I	YACGTR	2 cut(s)	126, 231
PshBI	ATTAAT	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	321
PsyI	GACNNNGTC	1 cut(s)	633
RsaI	GTAC	4 cut(s)	182, 819, 868, 1493
RsaNI	GTAC	4 cut(s)	181, 818, 867, 1492
RseI	CAYNNNNRTG	1 cut(s)	1059
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	6 cut(s)	351, 692, 1200, 1320, 1551, 1695
SatI	GCNGC	3 cut(s)	156, 1303, 1649
Sau3AI	GATC	5 cut(s)	296, 558, 1021, 1083, 1378
ScaI	AGTACT	1 cut(s)	868
SchI	GAGTC	1 cut(s)	1597
ScrFI	CCNGG	1 cut(s)	6
SfaNI	GCATC	9 cut(s)	25, 238, 501, 606, 901, 946, 1063, 1621, 1675
SfcI	CTRYAG	1 cut(s)	1177
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SnaBI	TACGTA	2 cut(s)	126, 231
SpeI	ACTAGT	1 cut(s)	1006
Sse9I	AATT	9 cut(s)	163, 325, 478, 583, 813, 978, 1064, 1316, 1678
SsiI	CCGC	3 cut(s)	155, 158, 514
SspMI	CTAG	2 cut(s)	51, 1007
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	2 cut(s)	1702, 1716
TaaI	ACNGT	5 cut(s)	707, 1181, 1396, 1531, 1537
TaiI	ACGT	5 cut(s)	128, 233, 242, 653, 1440
TaqI	TCGA	3 cut(s)	299, 364, 592
TasI	AATT	9 cut(s)	163, 325, 478, 583, 813, 978, 1064, 1316, 1678
TatI	WGTACW	4 cut(s)	180, 817, 866, 1491
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	4 cut(s)	394, 589, 1347, 1486
Tru1I	TTAA	6 cut(s)	351, 692, 1200, 1320, 1551, 1695
Tru9I	TTAA	6 cut(s)	351, 692, 1200, 1320, 1551, 1695
TscAI	CASTG	6 cut(s)	157, 883, 1186, 1401, 1551, 1570
TseFI	GTSAC	6 cut(s)	436, 541, 751, 1171, 1276, 1531
TseI	GCWGC	2 cut(s)	1302, 1648
Tsp45I	GTSAC	6 cut(s)	436, 541, 751, 1171, 1276, 1531
TspRI	CASTG	6 cut(s)	157, 883, 1186, 1401, 1551, 1570
Tth111I	GACNNNGTC	1 cut(s)	633
Van91I	CCANNNNNTGG	1 cut(s)	1739
VspI	ATTAAT	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	1340
XapI	RAATTY	5 cut(s)	163, 583, 1064, 1316, 1678
XbaI	TCTAGA	1 cut(s)	50
XmiI	GTMKAC	2 cut(s)	122, 653
XmnI	GAANNNNTTC	2 cut(s)	1154, 1247
XspI	CTAG	2 cut(s)	51, 1007
ZrmI	AGTACT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.