Rh6DG083900

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
9820724 .. 9826793
6070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG083900.1

Sequence Viewer

Length: 1362 bp
ATGCCCCTCCCAAGACCCCATATTCCAACCCAGTCTTCCTTCCGCTTCTCTCCCTCCGACGCCCTCCTCGCCGACAAAGCAATCACCTACCTCAAGCGCCACCCCCACCATCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTGCTCCTCAAGTCCCAATTCGACCAAACCCTAATACTAAAGTTCCTCAATTGGGCTCGCAACCCCCACCACCGCTTCTTCACCTTCCAGAGCAAGTGCCTCGCCCTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGGCCCTCGCCGAGGACGTCGCCGTCAACACCGTCGACGACAGGGGCAATTTGGTCTTTCAGTGCCTCACGGACTCGCTGCAGGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATAAAGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCCGGTGTGCTTTCGTATAATGCGATTTTAGATGCTGTGATTAGTGTGCTTATCAATGGACTTAACAAACAAGCTCGGACAAGAGAAGCAAAGAAGCTTCTACTGAAGTTGTTCTATGATAACTCTGTCCCGGATGATGTCACATACAATACTCTAATAGAGAGCTGCACAAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGGAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACTGTTATTGCACTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTCTGAGGAGCTGTGAGCTTACTGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATTTGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTCCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGGGGGGGGTGGAAAATACTCAAAAGATGATGCAAAGACTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGTGATCTTAAGCCAGAGTCCCTAATGAAAAATGCTACAGACGCAATGAAGGAGTCTCGCATTCCTGATCTTATTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTGTACATCAGCTTGAGGCACTTGATCGTTAG

Protein Analysis

453

Amino Acids

50.39

Weight (kDa)

7.25

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 258 - 288 5.9e-07 PPR repeat
PPR_2 PF13041 260 - 307 5.5e-09 PPR repeat family
PPR PF01535 264 - 293 2.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 1100
AccI GTMKAC 1 cut(s) 336
AciI CCGC 6 cut(s) 43, 147, 229, 277, 297, 404
AcoI YGGCCR 1 cut(s) 1074
AcsI RAATTY 3 cut(s) 442, 677, 1039
AcuI CTGAAG 3 cut(s) 162, 623, 1160
AcyI GRCGYC 2 cut(s) 60, 318
AdeI CACNNNGTG 1 cut(s) 1331
AfaI GTAC 2 cut(s) 854, 1335
AfeI AGCGCT 1 cut(s) 1111
AfiI CCNNNNNNNGG 4 cut(s) 208, 313, 703, 1100
AflII CTTAAG 1 cut(s) 1199
AgsI TTSAA 7 cut(s) 283, 442, 677, 752, 847, 1019, 1286
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
Alw21I GWGCWC 1 cut(s) 1191
Alw26I GTCTC 2 cut(s) 1091, 1251
Alw44I GTGCAC 1 cut(s) 1187
Aor51HI AGCGCT 1 cut(s) 1111
AoxI GGCC 2 cut(s) 303, 1074
ApaLI GTGCAC 1 cut(s) 1187
ApeKI GCWGC 4 cut(s) 379, 663, 1319, 1322
ApoI RAATTY 3 cut(s) 442, 677, 1039
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 2 cut(s) 99, 1112
AspS9I GGNCC 1 cut(s) 304
AsuC2I CCSGG 2 cut(s) 501, 629
AsuHPI GGTGA 6 cut(s) 76, 127, 229, 265, 433, 1079
BaeGI GKGCMC 1 cut(s) 1191
BalI TGGCCA 1 cut(s) 1076
BanII GRGCYC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 1191
BbvI GCAGC 4 cut(s) 366, 650, 1309, 1331
BccI CCATC 2 cut(s) 117, 1076
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 759
BcnI CCSGG 2 cut(s) 501, 629
BcoDI GTCTC 2 cut(s) 1091, 1251
BfmI CTRYAG 2 cut(s) 380, 1227
BfoI RGCGCY 2 cut(s) 100, 1113
BfrI CTTAAG 1 cut(s) 1199
BfuAI ACCTGC 1 cut(s) 373
BisI GCNGC 5 cut(s) 147, 380, 664, 1320, 1323
BlpI GCTNAGC 1 cut(s) 996
BlsI GCNGC 5 cut(s) 148, 381, 665, 1321, 1324
Bme1390I CCNGG 3 cut(s) 302, 501, 629
BmgT120I GGNCC 1 cut(s) 304
BmrFI CCNGG 3 cut(s) 302, 501, 629
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 5 cut(s) 520, 982, 1036, 1138, 1277
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 996
BpuEI CTTGAG 2 cut(s) 77, 149
BpuMI CCSGG 2 cut(s) 501, 629
BsaHI GRCGYC 2 cut(s) 60, 318
BsaI GGTCTC 1 cut(s) 1091
BsaJI CCNNGG 4 cut(s) 300, 312, 1063, 1077
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 313, 703, 1100
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 1242
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 300, 312, 1063, 1077
BseGI GGATG 4 cut(s) 267, 637, 1051, 1087
BseLI CCNNNNNNNGG 4 cut(s) 208, 313, 703, 1100
BseMI GCAATG 1 cut(s) 1242
BseMII CTCAG 4 cut(s) 918, 938, 962, 987
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 4 cut(s) 56, 152, 988, 1322
BseSI GKGCMC 1 cut(s) 1191
BseXI GCAGC 4 cut(s) 366, 650, 1309, 1331
BsgI GTGCAG 4 cut(s) 649, 1137, 1308, 1338
BshFI GGCC 2 cut(s) 305, 1076
BsiHKAI GWGCWC 1 cut(s) 1191
BsiSI CCGG 2 cut(s) 501, 629
BslFI GGGAC 3 cut(s) 154, 611, 1195
BslI CCNNNNNNNGG 4 cut(s) 208, 313, 703, 1100
BsmAI GTCTC 2 cut(s) 1091, 1251
BsmFI GGGAC 3 cut(s) 154, 611, 1195
BsmI GAATGC 1 cut(s) 1251
BsnI GGCC 2 cut(s) 305, 1076
Bso31I GGTCTC 1 cut(s) 1091
Bsp1286I GDGCHC 2 cut(s) 214, 1191
Bsp1407I TGTACA 2 cut(s) 852, 1333
Bsp143I GATC 5 cut(s) 739, 759, 1195, 1258, 1354
Bsp1720I GCTNAGC 1 cut(s) 996
BspACI CCGC 6 cut(s) 43, 147, 229, 277, 297, 404
BspANI GGCC 2 cut(s) 305, 1076
BspCNI CTCAG 4 cut(s) 919, 939, 963, 988
BspMAI CTGCAG 1 cut(s) 384
BspMI ACCTGC 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 1199
BspTNI GGTCTC 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 1242
BsrGI TGTACA 2 cut(s) 852, 1333
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 4 cut(s) 300, 312, 1063, 1077
BssMI GATC 5 cut(s) 739, 759, 1195, 1258, 1354
BssNI GRCGYC 2 cut(s) 60, 318
BssT1I CCWWGG 2 cut(s) 1063, 1077
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 6 cut(s) 334, 757, 892, 898, 1159, 1193
Bst6I CTCTTC 1 cut(s) 130
BstACI GRCGYC 2 cut(s) 60, 318
BstAFI CTTAAG 1 cut(s) 1199
BstAUI TGTACA 2 cut(s) 852, 1333
BstC8I GCNNGC 4 cut(s) 158, 214, 1002, 1108
BstDEI CTNAG 6 cut(s) 475, 927, 947, 971, 996, 1328
BstENI CCTNNNNNAGG 2 cut(s) 311, 701
BstF5I GGATG 4 cut(s) 267, 637, 1051, 1087
BstH2I RGCGCY 2 cut(s) 100, 1113
BstHHI GCGC 2 cut(s) 99, 1112
BstKTI GATC 5 cut(s) 742, 762, 1198, 1261, 1357
BstMAI GTCTC 2 cut(s) 1091, 1251
BstMBI GATC 5 cut(s) 739, 759, 1195, 1258, 1354
BstMWI GCNNNNNNNGC 7 cut(s) 68, 77, 396, 505, 1001, 1006, 1232
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 300, 499, 627
BstSFI CTRYAG 2 cut(s) 380, 1227
BstSLI GKGCMC 1 cut(s) 1191
BstV1I GCAGC 4 cut(s) 366, 650, 1309, 1331
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 305, 1076
BtgZI GCGATG 1 cut(s) 1254
BtsCI GGATG 4 cut(s) 267, 637, 1051, 1087
BtsIMutI CAGTG 4 cut(s) 368, 762, 905, 924
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 4 cut(s) 158, 214, 1002, 1108
CfoI GCGC 2 cut(s) 99, 1112
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 2 cut(s) 68, 1241
Csp6I GTAC 2 cut(s) 853, 1334
CviAII CATG 3 cut(s) 488, 715, 809
CviQI GTAC 2 cut(s) 853, 1334
DdeI CTNAG 6 cut(s) 475, 927, 947, 971, 996, 1328
DpnI GATC 5 cut(s) 741, 761, 1197, 1260, 1356
DpnII GATC 5 cut(s) 739, 759, 1195, 1258, 1354
DraIII CACNNNGTG 1 cut(s) 1331
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 1074
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 1063, 1077
Eco24I GRGCYC 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 1091
Eco47III AGCGCT 1 cut(s) 1111
Eco57I CTGAAG 3 cut(s) 162, 623, 1160
EcoNI CCTNNNNNAGG 2 cut(s) 311, 701
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 1063, 1077
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 2 cut(s) 1063, 1077
FaeI CATG 3 cut(s) 491, 718, 812
FaqI GGGAC 3 cut(s) 154, 611, 1195
FatI CATG 3 cut(s) 487, 714, 808
FauI CCCGC 1 cut(s) 284
FbaI TGATCA 1 cut(s) 759
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 5 cut(s) 147, 380, 664, 1320, 1323
FokI GGATG 4 cut(s) 254, 644, 1058, 1094
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 5 cut(s) 147, 380, 664, 1320, 1323
GlaI GCGC 2 cut(s) 98, 1111
GluI GCNGC 5 cut(s) 147, 380, 664, 1320, 1323
HaeII RGCGCY 2 cut(s) 100, 1113
HaeIII GGCC 2 cut(s) 305, 1076
HapII CCGG 2 cut(s) 501, 629
HgaI GACGC 2 cut(s) 68, 1241
HhaI GCGC 2 cut(s) 99, 1112
Hin1I GRCGYC 2 cut(s) 60, 318
Hin1II CATG 3 cut(s) 491, 718, 812
Hin6I GCGC 2 cut(s) 97, 1110
HinP1I GCGC 2 cut(s) 97, 1110
HincII GTYRAC 3 cut(s) 328, 337, 472
HindII GTYRAC 3 cut(s) 328, 337, 472
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 6 cut(s) 374, 708, 847, 949, 1208, 1244
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 2 cut(s) 501, 629
HphI GGTGA 6 cut(s) 76, 127, 229, 265, 433, 1079
Hpy166II GTNNAC 5 cut(s) 328, 337, 472, 1189, 1334
Hpy188I TCNGA 3 cut(s) 58, 576, 972
Hpy188III TCNNGA 4 cut(s) 244, 763, 836, 1256
Hpy8I GTNNAC 5 cut(s) 328, 337, 472, 1189, 1334
Hpy99I CGWCG 4 cut(s) 62, 323, 338, 341
HpyAV CCTTC 7 cut(s) 49, 250, 712, 818, 1028, 1100, 1234
HpyCH4III ACNGT 6 cut(s) 334, 757, 892, 898, 1159, 1193
HpyCH4IV ACGT 2 cut(s) 318, 798
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 77, 396, 505, 1001, 1006, 1232
HpyF3I CTNAG 6 cut(s) 475, 927, 947, 971, 996, 1328
HpySE526I ACGT 2 cut(s) 318, 798
Hsp92I GRCGYC 2 cut(s) 60, 318
Hsp92II CATG 3 cut(s) 491, 718, 812
HspAI GCGC 2 cut(s) 97, 1110
Ksp22I TGATCA 1 cut(s) 759
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 5 cut(s) 739, 759, 1195, 1258, 1354
LmnI GCTCC 4 cut(s) 165, 785, 975, 1103
Lsp1109I GCAGC 4 cut(s) 366, 650, 1309, 1331
LweI GCATC 5 cut(s) 520, 982, 1036, 1138, 1277
MaeII ACGT 2 cut(s) 318, 798
MaeIII GTNAC 2 cut(s) 637, 892
MalI GATC 5 cut(s) 741, 761, 1197, 1260, 1356
MboI GATC 5 cut(s) 739, 759, 1195, 1258, 1354
MboII GAAGA 6 cut(s) 27, 117, 226, 872, 1166, 1305
MfeI CAATTG 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 214, 1191
MlsI TGGCCA 1 cut(s) 1076
MluCI AATT 7 cut(s) 173, 205, 349, 391, 442, 677, 1039
MluNI TGGCCA 1 cut(s) 1076
MlyI GAGTC 4 cut(s) 368, 958, 1217, 1253
MmeI TCCRAC 2 cut(s) 50, 81
Mox20I TGGCCA 1 cut(s) 1076
MroXI GAANNNNTTC 1 cut(s) 608
MscI TGGCCA 1 cut(s) 1076
MseI TTAA 7 cut(s) 462, 471, 561, 681, 912, 1056, 1200
Msp20I TGGCCA 1 cut(s) 1076
MspA1I CMGCKG 1 cut(s) 1322
MspCI CTTAAG 1 cut(s) 1199
MspI CCGG 2 cut(s) 501, 629
MspR9I CCNGG 3 cut(s) 302, 501, 629
MunI CAATTG 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 1251
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 7 cut(s) 68, 77, 396, 505, 1001, 1006, 1232
NciI CCSGG 2 cut(s) 501, 629
NdeII GATC 5 cut(s) 739, 759, 1195, 1258, 1354
NlaIII CATG 3 cut(s) 491, 718, 812
NmeAIII GCCGAG 2 cut(s) 337, 380
NmuCI GTSAC 2 cut(s) 637, 892
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 518
PctI GAATGC 1 cut(s) 1251
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 2 cut(s) 708, 847
PflMI CCANNNNNTGG 1 cut(s) 1100
PfoI TCCNGGA 1 cut(s) 627
PkrI GCNGC 5 cut(s) 148, 381, 665, 1321, 1324
PleI GAGTC 4 cut(s) 368, 957, 1216, 1252
PpsI GAGTC 4 cut(s) 368, 957, 1216, 1252
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 1 cut(s) 304
PstI CTGCAG 1 cut(s) 384
PvuII CAGCTG 1 cut(s) 1322
RsaI GTAC 2 cut(s) 854, 1335
RsaNI GTAC 2 cut(s) 853, 1334
SalI GTCGAC 1 cut(s) 335
SaqAI TTAA 7 cut(s) 462, 471, 561, 681, 912, 1056, 1200
SatI GCNGC 5 cut(s) 147, 380, 664, 1320, 1323
Sau3AI GATC 5 cut(s) 739, 759, 1195, 1258, 1354
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 4 cut(s) 368, 958, 1217, 1253
ScrFI CCNGG 3 cut(s) 302, 501, 629
SduI GDGCHC 2 cut(s) 214, 1191
SfaNI GCATC 5 cut(s) 520, 982, 1036, 1138, 1277
SfcI CTRYAG 2 cut(s) 380, 1227
SgrDI CGTCGACG 1 cut(s) 335
SmlI CTYRAG 4 cut(s) 92, 164, 1199, 1343
SmoI CTYRAG 4 cut(s) 92, 164, 1199, 1343
Sse9I AATT 7 cut(s) 173, 205, 349, 391, 442, 677, 1039
SsiI CCGC 6 cut(s) 43, 147, 229, 277, 297, 404
StyD4I CCNGG 3 cut(s) 300, 499, 627
StyI CCWWGG 2 cut(s) 1063, 1077
TaaI ACNGT 6 cut(s) 334, 757, 892, 898, 1159, 1193
TaiI ACGT 2 cut(s) 321, 801
TaqI TCGA 3 cut(s) 177, 336, 411
TasI AATT 7 cut(s) 173, 205, 349, 391, 442, 677, 1039
TatI WGTACW 2 cut(s) 852, 1333
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 708, 847
Tru1I TTAA 7 cut(s) 462, 471, 561, 681, 912, 1056, 1200
Tru9I TTAA 7 cut(s) 462, 471, 561, 681, 912, 1056, 1200
TscAI CASTG 4 cut(s) 368, 762, 912, 931
TseFI GTSAC 2 cut(s) 637, 892
TseI GCWGC 4 cut(s) 379, 663, 1319, 1322
Tsp45I GTSAC 2 cut(s) 637, 892
TspDTI ATGAA 6 cut(s) 731, 743, 950, 957, 1232, 1253
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 4 cut(s) 368, 762, 912, 931
Van91I CCANNNNNTGG 1 cut(s) 1100
Vha464I CTTAAG 1 cut(s) 1199
VneI GTGCAC 1 cut(s) 1187
XagI CCTNNNNNAGG 2 cut(s) 311, 701
XapI RAATTY 3 cut(s) 442, 677, 1039
XmiI GTMKAC 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 608
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.