Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G39710 |
| fragaria_vesca | FvH4_2g06720 |
| malus_domestica | MD10G1090200.v1.1 |
| prunus_persica | Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1 |
| pyrus_communis | pycom10g07360 |
| rosa_chinensis | RchiOBHm_Chr6g0258901 |
| rosa_laevigata | RLG00000001283 RLG00000002770 RLG00000014575 |
| rosa_multiflora | Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00206140 Rroxscaffold_7G00206330 |
| rosa_rugosa | Rorug05G0584200 |
| rosa_samantha | Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700 |
| rosa_wichuraiana | Rw0G004300 Rw6G008720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 323 |
| AatII | GACGTC | 1 cut(s) | 321 |
| Acc36I | ACCTGC | 1 cut(s) | 373 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1100 |
| AccI | GTMKAC | 1 cut(s) | 336 |
| AciI | CCGC | 6 cut(s) | 43, 147, 229, 277, 297, 404 |
| AcoI | YGGCCR | 1 cut(s) | 1074 |
| AcsI | RAATTY | 3 cut(s) | 442, 677, 1039 |
| AcuI | CTGAAG | 3 cut(s) | 162, 623, 1160 |
| AcyI | GRCGYC | 2 cut(s) | 60, 318 |
| AdeI | CACNNNGTG | 1 cut(s) | 1331 |
| AfaI | GTAC | 2 cut(s) | 854, 1335 |
| AfeI | AGCGCT | 1 cut(s) | 1111 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 208, 313, 703, 1100 |
| AflII | CTTAAG | 1 cut(s) | 1199 |
| AgsI | TTSAA | 7 cut(s) | 283, 442, 677, 752, 847, 1019, 1286 |
| AjnI | CCWGG | 1 cut(s) | 300 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 19, 51 |
| Alw21I | GWGCWC | 1 cut(s) | 1191 |
| Alw26I | GTCTC | 2 cut(s) | 1091, 1251 |
| Alw44I | GTGCAC | 1 cut(s) | 1187 |
| Aor51HI | AGCGCT | 1 cut(s) | 1111 |
| AoxI | GGCC | 2 cut(s) | 303, 1074 |
| ApaLI | GTGCAC | 1 cut(s) | 1187 |
| ApeKI | GCWGC | 4 cut(s) | 379, 663, 1319, 1322 |
| ApoI | RAATTY | 3 cut(s) | 442, 677, 1039 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 608 |
| AspLEI | GCGC | 2 cut(s) | 99, 1112 |
| AspS9I | GGNCC | 1 cut(s) | 304 |
| AsuC2I | CCSGG | 2 cut(s) | 501, 629 |
| AsuHPI | GGTGA | 6 cut(s) | 76, 127, 229, 265, 433, 1079 |
| BaeGI | GKGCMC | 1 cut(s) | 1191 |
| BalI | TGGCCA | 1 cut(s) | 1076 |
| BanII | GRGCYC | 1 cut(s) | 214 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 1 cut(s) | 1191 |
| BbvI | GCAGC | 4 cut(s) | 366, 650, 1309, 1331 |
| BccI | CCATC | 2 cut(s) | 117, 1076 |
| BceAI | ACGGC | 1 cut(s) | 308 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 238, 272 |
| BciT130I | CCWGG | 1 cut(s) | 302 |
| BclI | TGATCA | 1 cut(s) | 759 |
| BcnI | CCSGG | 2 cut(s) | 501, 629 |
| BcoDI | GTCTC | 2 cut(s) | 1091, 1251 |
| BfmI | CTRYAG | 2 cut(s) | 380, 1227 |
| BfoI | RGCGCY | 2 cut(s) | 100, 1113 |
| BfrI | CTTAAG | 1 cut(s) | 1199 |
| BfuAI | ACCTGC | 1 cut(s) | 373 |
| BisI | GCNGC | 5 cut(s) | 147, 380, 664, 1320, 1323 |
| BlpI | GCTNAGC | 1 cut(s) | 996 |
| BlsI | GCNGC | 5 cut(s) | 148, 381, 665, 1321, 1324 |
| Bme1390I | CCNGG | 3 cut(s) | 302, 501, 629 |
| BmgT120I | GGNCC | 1 cut(s) | 304 |
| BmrFI | CCNGG | 3 cut(s) | 302, 501, 629 |
| BmrI | ACTGGG | 1 cut(s) | 25 |
| BmsI | GCATC | 5 cut(s) | 520, 982, 1036, 1138, 1277 |
| BmuI | ACTGGG | 1 cut(s) | 25 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 996 |
| BpuEI | CTTGAG | 2 cut(s) | 77, 149 |
| BpuMI | CCSGG | 2 cut(s) | 501, 629 |
| BsaHI | GRCGYC | 2 cut(s) | 60, 318 |
| BsaI | GGTCTC | 1 cut(s) | 1091 |
| BsaJI | CCNNGG | 4 cut(s) | 300, 312, 1063, 1077 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 208, 313, 703, 1100 |
| Bse1I | ACTGG | 1 cut(s) | 31 |
| Bse3DI | GCAATG | 1 cut(s) | 1242 |
| BseBI | CCWGG | 1 cut(s) | 302 |
| BseDI | CCNNGG | 4 cut(s) | 300, 312, 1063, 1077 |
| BseGI | GGATG | 4 cut(s) | 267, 637, 1051, 1087 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 208, 313, 703, 1100 |
| BseMI | GCAATG | 1 cut(s) | 1242 |
| BseMII | CTCAG | 4 cut(s) | 918, 938, 962, 987 |
| BseNI | ACTGG | 1 cut(s) | 31 |
| BseRI | GAGGAG | 4 cut(s) | 56, 152, 988, 1322 |
| BseSI | GKGCMC | 1 cut(s) | 1191 |
| BseXI | GCAGC | 4 cut(s) | 366, 650, 1309, 1331 |
| BsgI | GTGCAG | 4 cut(s) | 649, 1137, 1308, 1338 |
| BshFI | GGCC | 2 cut(s) | 305, 1076 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1191 |
| BsiSI | CCGG | 2 cut(s) | 501, 629 |
| BslFI | GGGAC | 3 cut(s) | 154, 611, 1195 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 208, 313, 703, 1100 |
| BsmAI | GTCTC | 2 cut(s) | 1091, 1251 |
| BsmFI | GGGAC | 3 cut(s) | 154, 611, 1195 |
| BsmI | GAATGC | 1 cut(s) | 1251 |
| BsnI | GGCC | 2 cut(s) | 305, 1076 |
| Bso31I | GGTCTC | 1 cut(s) | 1091 |
| Bsp1286I | GDGCHC | 2 cut(s) | 214, 1191 |
| Bsp1407I | TGTACA | 2 cut(s) | 852, 1333 |
| Bsp143I | GATC | 5 cut(s) | 739, 759, 1195, 1258, 1354 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 996 |
| BspACI | CCGC | 6 cut(s) | 43, 147, 229, 277, 297, 404 |
| BspANI | GGCC | 2 cut(s) | 305, 1076 |
| BspCNI | CTCAG | 4 cut(s) | 919, 939, 963, 988 |
| BspMAI | CTGCAG | 1 cut(s) | 384 |
| BspMI | ACCTGC | 1 cut(s) | 373 |
| BspTI | CTTAAG | 1 cut(s) | 1199 |
| BspTNI | GGTCTC | 1 cut(s) | 1091 |
| BsrDI | GCAATG | 1 cut(s) | 1242 |
| BsrGI | TGTACA | 2 cut(s) | 852, 1333 |
| BsrI | ACTGG | 1 cut(s) | 31 |
| BssECI | CCNNGG | 4 cut(s) | 300, 312, 1063, 1077 |
| BssMI | GATC | 5 cut(s) | 739, 759, 1195, 1258, 1354 |
| BssNI | GRCGYC | 2 cut(s) | 60, 318 |
| BssT1I | CCWWGG | 2 cut(s) | 1063, 1077 |
| Bst2UI | CCWGG | 1 cut(s) | 302 |
| Bst4CI | ACNGT | 6 cut(s) | 334, 757, 892, 898, 1159, 1193 |
| Bst6I | CTCTTC | 1 cut(s) | 130 |
| BstACI | GRCGYC | 2 cut(s) | 60, 318 |
| BstAFI | CTTAAG | 1 cut(s) | 1199 |
| BstAUI | TGTACA | 2 cut(s) | 852, 1333 |
| BstC8I | GCNNGC | 4 cut(s) | 158, 214, 1002, 1108 |
| BstDEI | CTNAG | 6 cut(s) | 475, 927, 947, 971, 996, 1328 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 311, 701 |
| BstF5I | GGATG | 4 cut(s) | 267, 637, 1051, 1087 |
| BstH2I | RGCGCY | 2 cut(s) | 100, 1113 |
| BstHHI | GCGC | 2 cut(s) | 99, 1112 |
| BstKTI | GATC | 5 cut(s) | 742, 762, 1198, 1261, 1357 |
| BstMAI | GTCTC | 2 cut(s) | 1091, 1251 |
| BstMBI | GATC | 5 cut(s) | 739, 759, 1195, 1258, 1354 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 68, 77, 396, 505, 1001, 1006, 1232 |
| BstNI | CCWGG | 1 cut(s) | 302 |
| BstSCI | CCNGG | 3 cut(s) | 300, 499, 627 |
| BstSFI | CTRYAG | 2 cut(s) | 380, 1227 |
| BstSLI | GKGCMC | 1 cut(s) | 1191 |
| BstV1I | GCAGC | 4 cut(s) | 366, 650, 1309, 1331 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BsuRI | GGCC | 2 cut(s) | 305, 1076 |
| BtgZI | GCGATG | 1 cut(s) | 1254 |
| BtsCI | GGATG | 4 cut(s) | 267, 637, 1051, 1087 |
| BtsIMutI | CAGTG | 4 cut(s) | 368, 762, 905, 924 |
| BveI | ACCTGC | 1 cut(s) | 373 |
| Cac8I | GCNNGC | 4 cut(s) | 158, 214, 1002, 1108 |
| CfoI | GCGC | 2 cut(s) | 99, 1112 |
| Cfr13I | GGNCC | 1 cut(s) | 304 |
| CseI | GACGC | 2 cut(s) | 68, 1241 |
| Csp6I | GTAC | 2 cut(s) | 853, 1334 |
| CviAII | CATG | 3 cut(s) | 488, 715, 809 |
| CviQI | GTAC | 2 cut(s) | 853, 1334 |
| DdeI | CTNAG | 6 cut(s) | 475, 927, 947, 971, 996, 1328 |
| DpnI | GATC | 5 cut(s) | 741, 761, 1197, 1260, 1356 |
| DpnII | GATC | 5 cut(s) | 739, 759, 1195, 1258, 1354 |
| DraIII | CACNNNGTG | 1 cut(s) | 1331 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 323 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 323 |
| EaeI | YGGCCR | 1 cut(s) | 1074 |
| Eam1104I | CTCTTC | 1 cut(s) | 130 |
| EarI | CTCTTC | 1 cut(s) | 130 |
| EciI | GGCGGA | 1 cut(s) | 286 |
| Eco130I | CCWWGG | 2 cut(s) | 1063, 1077 |
| Eco24I | GRGCYC | 1 cut(s) | 214 |
| Eco31I | GGTCTC | 1 cut(s) | 1091 |
| Eco47III | AGCGCT | 1 cut(s) | 1111 |
| Eco57I | CTGAAG | 3 cut(s) | 162, 623, 1160 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 311, 701 |
| EcoO109I | RGGNCCY | 1 cut(s) | 304 |
| EcoRII | CCWGG | 1 cut(s) | 300 |
| EcoT14I | CCWWGG | 2 cut(s) | 1063, 1077 |
| EcoT38I | GRGCYC | 1 cut(s) | 214 |
| ErhI | CCWWGG | 2 cut(s) | 1063, 1077 |
| FaeI | CATG | 3 cut(s) | 491, 718, 812 |
| FaqI | GGGAC | 3 cut(s) | 154, 611, 1195 |
| FatI | CATG | 3 cut(s) | 487, 714, 808 |
| FauI | CCCGC | 1 cut(s) | 284 |
| FbaI | TGATCA | 1 cut(s) | 759 |
| FblI | GTMKAC | 1 cut(s) | 336 |
| Fnu4HI | GCNGC | 5 cut(s) | 147, 380, 664, 1320, 1323 |
| FokI | GGATG | 4 cut(s) | 254, 644, 1058, 1094 |
| FriOI | GRGCYC | 1 cut(s) | 214 |
| Fsp4HI | GCNGC | 5 cut(s) | 147, 380, 664, 1320, 1323 |
| GlaI | GCGC | 2 cut(s) | 98, 1111 |
| GluI | GCNGC | 5 cut(s) | 147, 380, 664, 1320, 1323 |
| HaeII | RGCGCY | 2 cut(s) | 100, 1113 |
| HaeIII | GGCC | 2 cut(s) | 305, 1076 |
| HapII | CCGG | 2 cut(s) | 501, 629 |
| HgaI | GACGC | 2 cut(s) | 68, 1241 |
| HhaI | GCGC | 2 cut(s) | 99, 1112 |
| Hin1I | GRCGYC | 2 cut(s) | 60, 318 |
| Hin1II | CATG | 3 cut(s) | 491, 718, 812 |
| Hin6I | GCGC | 2 cut(s) | 97, 1110 |
| HinP1I | GCGC | 2 cut(s) | 97, 1110 |
| HincII | GTYRAC | 3 cut(s) | 328, 337, 472 |
| HindII | GTYRAC | 3 cut(s) | 328, 337, 472 |
| HindIII | AAGCTT | 1 cut(s) | 593 |
| HinfI | GANTC | 6 cut(s) | 374, 708, 847, 949, 1208, 1244 |
| HpaI | GTTAAC | 1 cut(s) | 472 |
| HpaII | CCGG | 2 cut(s) | 501, 629 |
| HphI | GGTGA | 6 cut(s) | 76, 127, 229, 265, 433, 1079 |
| Hpy166II | GTNNAC | 5 cut(s) | 328, 337, 472, 1189, 1334 |
| Hpy188I | TCNGA | 3 cut(s) | 58, 576, 972 |
| Hpy188III | TCNNGA | 4 cut(s) | 244, 763, 836, 1256 |
| Hpy8I | GTNNAC | 5 cut(s) | 328, 337, 472, 1189, 1334 |
| Hpy99I | CGWCG | 4 cut(s) | 62, 323, 338, 341 |
| HpyAV | CCTTC | 7 cut(s) | 49, 250, 712, 818, 1028, 1100, 1234 |
| HpyCH4III | ACNGT | 6 cut(s) | 334, 757, 892, 898, 1159, 1193 |
| HpyCH4IV | ACGT | 2 cut(s) | 318, 798 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 68, 77, 396, 505, 1001, 1006, 1232 |
| HpyF3I | CTNAG | 6 cut(s) | 475, 927, 947, 971, 996, 1328 |
| HpySE526I | ACGT | 2 cut(s) | 318, 798 |
| Hsp92I | GRCGYC | 2 cut(s) | 60, 318 |
| Hsp92II | CATG | 3 cut(s) | 491, 718, 812 |
| HspAI | GCGC | 2 cut(s) | 97, 1110 |
| Ksp22I | TGATCA | 1 cut(s) | 759 |
| KspAI | GTTAAC | 1 cut(s) | 472 |
| Kzo9I | GATC | 5 cut(s) | 739, 759, 1195, 1258, 1354 |
| LmnI | GCTCC | 4 cut(s) | 165, 785, 975, 1103 |
| Lsp1109I | GCAGC | 4 cut(s) | 366, 650, 1309, 1331 |
| LweI | GCATC | 5 cut(s) | 520, 982, 1036, 1138, 1277 |
| MaeII | ACGT | 2 cut(s) | 318, 798 |
| MaeIII | GTNAC | 2 cut(s) | 637, 892 |
| MalI | GATC | 5 cut(s) | 741, 761, 1197, 1260, 1356 |
| MboI | GATC | 5 cut(s) | 739, 759, 1195, 1258, 1354 |
| MboII | GAAGA | 6 cut(s) | 27, 117, 226, 872, 1166, 1305 |
| MfeI | CAATTG | 1 cut(s) | 205 |
| MhlI | GDGCHC | 2 cut(s) | 214, 1191 |
| MlsI | TGGCCA | 1 cut(s) | 1076 |
| MluCI | AATT | 7 cut(s) | 173, 205, 349, 391, 442, 677, 1039 |
| MluNI | TGGCCA | 1 cut(s) | 1076 |
| MlyI | GAGTC | 4 cut(s) | 368, 958, 1217, 1253 |
| MmeI | TCCRAC | 2 cut(s) | 50, 81 |
| Mox20I | TGGCCA | 1 cut(s) | 1076 |
| MroXI | GAANNNNTTC | 1 cut(s) | 608 |
| MscI | TGGCCA | 1 cut(s) | 1076 |
| MseI | TTAA | 7 cut(s) | 462, 471, 561, 681, 912, 1056, 1200 |
| Msp20I | TGGCCA | 1 cut(s) | 1076 |
| MspA1I | CMGCKG | 1 cut(s) | 1322 |
| MspCI | CTTAAG | 1 cut(s) | 1199 |
| MspI | CCGG | 2 cut(s) | 501, 629 |
| MspR9I | CCNGG | 3 cut(s) | 302, 501, 629 |
| MunI | CAATTG | 1 cut(s) | 205 |
| Mva1269I | GAATGC | 1 cut(s) | 1251 |
| MvaI | CCWGG | 1 cut(s) | 302 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 68, 77, 396, 505, 1001, 1006, 1232 |
| NciI | CCSGG | 2 cut(s) | 501, 629 |
| NdeII | GATC | 5 cut(s) | 739, 759, 1195, 1258, 1354 |
| NlaIII | CATG | 3 cut(s) | 491, 718, 812 |
| NmeAIII | GCCGAG | 2 cut(s) | 337, 380 |
| NmuCI | GTSAC | 2 cut(s) | 637, 892 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 315, 518 |
| PctI | GAATGC | 1 cut(s) | 1251 |
| PdmI | GAANNNNTTC | 1 cut(s) | 608 |
| PfeI | GAWTC | 2 cut(s) | 708, 847 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1100 |
| PfoI | TCCNGGA | 1 cut(s) | 627 |
| PkrI | GCNGC | 5 cut(s) | 148, 381, 665, 1321, 1324 |
| PleI | GAGTC | 4 cut(s) | 368, 957, 1216, 1252 |
| PpsI | GAGTC | 4 cut(s) | 368, 957, 1216, 1252 |
| Psp6I | CCWGG | 1 cut(s) | 300 |
| PspGI | CCWGG | 1 cut(s) | 300 |
| PspPI | GGNCC | 1 cut(s) | 304 |
| PstI | CTGCAG | 1 cut(s) | 384 |
| PvuII | CAGCTG | 1 cut(s) | 1322 |
| RsaI | GTAC | 2 cut(s) | 854, 1335 |
| RsaNI | GTAC | 2 cut(s) | 853, 1334 |
| SalI | GTCGAC | 1 cut(s) | 335 |
| SaqAI | TTAA | 7 cut(s) | 462, 471, 561, 681, 912, 1056, 1200 |
| SatI | GCNGC | 5 cut(s) | 147, 380, 664, 1320, 1323 |
| Sau3AI | GATC | 5 cut(s) | 739, 759, 1195, 1258, 1354 |
| Sau96I | GGNCC | 1 cut(s) | 304 |
| SchI | GAGTC | 4 cut(s) | 368, 958, 1217, 1253 |
| ScrFI | CCNGG | 3 cut(s) | 302, 501, 629 |
| SduI | GDGCHC | 2 cut(s) | 214, 1191 |
| SfaNI | GCATC | 5 cut(s) | 520, 982, 1036, 1138, 1277 |
| SfcI | CTRYAG | 2 cut(s) | 380, 1227 |
| SgrDI | CGTCGACG | 1 cut(s) | 335 |
| SmlI | CTYRAG | 4 cut(s) | 92, 164, 1199, 1343 |
| SmoI | CTYRAG | 4 cut(s) | 92, 164, 1199, 1343 |
| Sse9I | AATT | 7 cut(s) | 173, 205, 349, 391, 442, 677, 1039 |
| SsiI | CCGC | 6 cut(s) | 43, 147, 229, 277, 297, 404 |
| StyD4I | CCNGG | 3 cut(s) | 300, 499, 627 |
| StyI | CCWWGG | 2 cut(s) | 1063, 1077 |
| TaaI | ACNGT | 6 cut(s) | 334, 757, 892, 898, 1159, 1193 |
| TaiI | ACGT | 2 cut(s) | 321, 801 |
| TaqI | TCGA | 3 cut(s) | 177, 336, 411 |
| TasI | AATT | 7 cut(s) | 173, 205, 349, 391, 442, 677, 1039 |
| TatI | WGTACW | 2 cut(s) | 852, 1333 |
| TauI | GCSGC | 1 cut(s) | 149 |
| TfiI | GAWTC | 2 cut(s) | 708, 847 |
| Tru1I | TTAA | 7 cut(s) | 462, 471, 561, 681, 912, 1056, 1200 |
| Tru9I | TTAA | 7 cut(s) | 462, 471, 561, 681, 912, 1056, 1200 |
| TscAI | CASTG | 4 cut(s) | 368, 762, 912, 931 |
| TseFI | GTSAC | 2 cut(s) | 637, 892 |
| TseI | GCWGC | 4 cut(s) | 379, 663, 1319, 1322 |
| Tsp45I | GTSAC | 2 cut(s) | 637, 892 |
| TspDTI | ATGAA | 6 cut(s) | 731, 743, 950, 957, 1232, 1253 |
| TspGWI | ACGGA | 1 cut(s) | 386 |
| TspRI | CASTG | 4 cut(s) | 368, 762, 912, 931 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1100 |
| Vha464I | CTTAAG | 1 cut(s) | 1199 |
| VneI | GTGCAC | 1 cut(s) | 1187 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 311, 701 |
| XapI | RAATTY | 3 cut(s) | 442, 677, 1039 |
| XmiI | GTMKAC | 1 cut(s) | 336 |
| XmnI | GAANNNNTTC | 1 cut(s) | 608 |
| ZraI | GACGTC | 1 cut(s) | 319 |