Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Reverse (-)

13392437 .. 13395344

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGAGTTCTTCAAATAATTCACAAGTGTATGAAGCTACGGATGCCAACAAGGGAACATCTTCAACAACCCCAAAAGACAAAGGATCCAAACTGCCTCCACCAGAGCAAGTTACGTGCCCGCCAGCCCCGATGCGTCCACCTCCAAAAATTCCTGCCGTGCTTCTGGGCTCCGACAAACCTTTAGCTTCATTATTACCGAAATGCCCCTCCCAAGACCCCATATTCCAACCCAGTCCTCCTTCCGCTTCTCTCCCTCCCAAGACACCGTCGACGACAAGGGCAATTTGGTCTTTCAGTGCCTCATTGACTCGCTGCAGGTCTGCAATTCCAGCTCGGCGGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATGTAGTTGATAAAGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCCGGTGTGCTTTCGTATAATGCGATTGTAGATGCAGTGATTAGGTCTAGAGGGTCTGTACAGTTTGCTAAGAAGGTGTTTAGTGAGATGATTAGAAATGGGGTTTCGCCGAATGTGTATACATATAACATTTTGATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTAGGGGAAGGGTTATCCCCTGATGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATGTATATCACCCGATGCTGTTACCTATTCATCACTAATTCAAGGTGTCTGTCAGCAAGGGAGATTAGTTGATGCTTGTGATCTCTTCCAAGAAATGATAAGTATGGGTTTGCGTCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCAGTTGAATGATGAAATGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTATAGTGTGCTTATCAATGGACTTAACAAACGAGCTTGGACAAGAGAAGCAAAGAAGCTTCTACTCAAGTTGTTCTATGGTAACTCTGTCCCAGGTGATGTCACACACAATACTCTAATAGAGAGCTGCACGAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGAAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACTGTTATTGCCCTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTCTGAGGAGCTGTCAGCTTACTGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAACCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTCCTTCCAAATAGTGGAGCAAGCGCTTATTCATCATTTACCACTGCACTTTCCTTCACTTGCTGGAAAGGTCCTGATGAATGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

532

Amino Acids

58.15

Weight (kDa)

8.4

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	135 - 191	7.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	145 - 193	3.5e-13	PPR repeat family
PPR_1	PF12854	177 - 200	7.9e-06	PPR repeat
PPR_3	PF13812	200 - 255	4.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	205 - 237	5.8e-10	PPR repeat
PPR_2	PF13041	208 - 259	4.5e-15	PPR repeat family
PPR_long	PF17177	226 - 322	6.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	242 - 273	3e-11	PPR repeat
PPR_2	PF13041	245 - 294	3.3e-18	PPR repeat family
PPR	PF01535	248 - 278	2.4e-07	PPR repeat
PPR_3	PF13812	269 - 325	5.2e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	276 - 308	1.8e-13	PPR repeat
PPR	PF01535	283 - 313	2.2e-08	PPR repeat
PPR_2	PF13041	283 - 328	5.2e-18	PPR repeat family
PPR_1	PF12854	398 - 428	1.7e-06	PPR repeat
PPR_2	PF13041	400 - 447	7.8e-09	PPR repeat family
PPR	PF01535	404 - 433	5.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	1520
AccI	GTMKAC	2 cut(s)	269, 551
AciI	CCGC	5 cut(s)	119, 243, 337, 584, 587
AclWI	GGATC	2 cut(s)	78, 91
AcoI	YGGCCR	1 cut(s)	1494
AcsI	RAATTY	4 cut(s)	147, 592, 845, 1097
AcuI	CTGAAG	1 cut(s)	890
AfaI	GTAC	3 cut(s)	492, 643, 1274
AfeI	AGCGCT	1 cut(s)	1531
AfiI	CCNNNNNNNGG	2 cut(s)	1123, 1520
AjnI	CCWGG	1 cut(s)	1048
Alw26I	GTCTC	1 cut(s)	1511
AlwI	GGATC	2 cut(s)	78, 91
Aor51HI	AGCGCT	1 cut(s)	1531
AoxI	GGCC	1 cut(s)	1494
ApeKI	GCWGC	2 cut(s)	312, 1083
ApoI	RAATTY	4 cut(s)	147, 592, 845, 1097
Asp700I	GAANNNNTTC	2 cut(s)	58, 935
AspLEI	GCGC	1 cut(s)	1532
AspS9I	GGNCC	1 cut(s)	1577
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	4 cut(s)	367, 723, 1064, 1499
AvaII	GGWCC	1 cut(s)	1577
BaeGI	GKGCMC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	1496
BamHI	GGATCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	299, 1070
BccI	CCATC	3 cut(s)	694, 700, 1496
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	1050
BclI	TGATCA	2 cut(s)	864, 1179
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	1511
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	2 cut(s)	313, 958
BfoI	RGCGCY	1 cut(s)	1533
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	3 cut(s)	313, 585, 1084
BlpI	GCTNAGC	1 cut(s)	1416
BlsI	GCNGC	3 cut(s)	314, 586, 1085
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	2 cut(s)	435, 1050
Bme18I	GGWCC	1 cut(s)	1577
BmgT120I	GGNCC	1 cut(s)	1577
BmiI	GGNNCC	2 cut(s)	85, 169
BmrFI	CCNGG	2 cut(s)	435, 1050
BmrI	ACTGGG	2 cut(s)	225, 663
BmsI	GCATC	8 cut(s)	31, 120, 454, 676, 727, 784, 1402, 1456
BmuI	ACTGGG	2 cut(s)	225, 663
BpmI	CTGGAG	1 cut(s)	698
Bpu1102I	GCTNAGC	1 cut(s)	1416
BpuEI	CTTGAG	1 cut(s)	1007
BpuMI	CCSGG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	1511
BsaJI	CCNNGG	3 cut(s)	1048, 1483, 1497
Bsc4I	CCNNNNNNNGG	2 cut(s)	1123, 1520
Bse1I	ACTGG	3 cut(s)	231, 658, 681
BseBI	CCWGG	1 cut(s)	1050
BseDI	CCNNGG	3 cut(s)	1048, 1483, 1497
BseGI	GGATG	3 cut(s)	46, 1471, 1507
BseLI	CCNNNNNNNGG	2 cut(s)	1123, 1520
BseMII	CTCAG	4 cut(s)	1338, 1358, 1382, 1407
BseNI	ACTGG	3 cut(s)	231, 658, 681
BseRI	GAGGAG	1 cut(s)	1408
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	299, 1070
BsgI	GTGCAG	2 cut(s)	1069, 1536
BshFI	GGCC	1 cut(s)	1496
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	1031
BslI	CCNNNNNNNGG	2 cut(s)	1123, 1520
BsmAI	GTCTC	1 cut(s)	1511
BsmFI	GGGAC	1 cut(s)	1031
BsmI	GAATGC	1 cut(s)	686
BsnI	GGCC	1 cut(s)	1496
Bso31I	GGTCTC	1 cut(s)	1511
Bsp1286I	GDGCHC	2 cut(s)	119, 170
Bsp1407I	TGTACA	2 cut(s)	490, 1272
Bsp143I	GATC	5 cut(s)	83, 802, 864, 1159, 1179
Bsp1720I	GCTNAGC	1 cut(s)	1416
BspACI	CCGC	5 cut(s)	119, 243, 337, 584, 587
BspANI	GGCC	1 cut(s)	1496
BspCNI	CTCAG	4 cut(s)	1339, 1359, 1383, 1408
BspLI	GGNNCC	2 cut(s)	85, 169
BspMAI	CTGCAG	1 cut(s)	317
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	78, 91
BspQI	GCTCTTC	1 cut(s)	909
BspTNI	GGTCTC	1 cut(s)	1511
BsrGI	TGTACA	2 cut(s)	490, 1272
BsrI	ACTGG	3 cut(s)	231, 658, 681
BssECI	CCNNGG	3 cut(s)	1048, 1483, 1497
BssMI	GATC	5 cut(s)	83, 802, 864, 1159, 1179
BssNAI	GTATAC	1 cut(s)	552
BssT1I	CCWWGG	2 cut(s)	1483, 1497
Bst1107I	GTATAC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	1050
Bst4CI	ACNGT	5 cut(s)	267, 495, 1177, 1312, 1318
Bst6I	CTCTTC	2 cut(s)	812, 909
BstAUI	TGTACA	2 cut(s)	490, 1272
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	4 cut(s)	119, 123, 1422, 1528
BstDEI	CTNAG	6 cut(s)	409, 501, 1347, 1367, 1391, 1416
BstENI	CCTNNNNNAGG	1 cut(s)	1121
BstF5I	GGATG	3 cut(s)	46, 1471, 1507
BstH2I	RGCGCY	1 cut(s)	1533
BstHHI	GCGC	1 cut(s)	1532
BstKTI	GATC	5 cut(s)	86, 805, 867, 1162, 1182
BstMAI	GTCTC	1 cut(s)	1511
BstMBI	GATC	5 cut(s)	83, 802, 864, 1159, 1179
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 329, 439, 1421, 1426
BstNI	CCWGG	1 cut(s)	1050
BstSCI	CCNGG	2 cut(s)	433, 1048
BstSFI	CTRYAG	2 cut(s)	313, 958
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	299, 1070
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BstZ17I	GTATAC	1 cut(s)	552
BsuRI	GGCC	1 cut(s)	1496
BtsCI	GGATG	3 cut(s)	46, 1471, 1507
BtsI	GCAGTG	2 cut(s)	474, 1548
BtsIMutI	CAGTG	7 cut(s)	301, 474, 586, 651, 1182, 1344, 1548
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	4 cut(s)	119, 123, 1422, 1528
CfoI	GCGC	1 cut(s)	1532
Cfr13I	GGNCC	1 cut(s)	1577
CseI	GACGC	2 cut(s)	122, 824
Csp6I	GTAC	3 cut(s)	491, 642, 1273
CviAII	CATG	3 cut(s)	422, 1135, 1229
CviQI	GTAC	3 cut(s)	491, 642, 1273
DdeI	CTNAG	6 cut(s)	409, 501, 1347, 1367, 1391, 1416
DpnI	GATC	5 cut(s)	85, 804, 866, 1161, 1181
DpnII	GATC	5 cut(s)	83, 802, 864, 1159, 1179
EaeI	YGGCCR	1 cut(s)	1494
Eam1104I	CTCTTC	2 cut(s)	812, 909
EarI	CTCTTC	2 cut(s)	812, 909
Eco130I	CCWWGG	2 cut(s)	1483, 1497
Eco24I	GRGCYC	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	1511
Eco47I	GGWCC	1 cut(s)	1577
Eco47III	AGCGCT	1 cut(s)	1531
Eco57I	CTGAAG	1 cut(s)	890
EcoNI	CCTNNNNNAGG	1 cut(s)	1121
EcoO109I	RGGNCCY	1 cut(s)	1577
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	1048
EcoT14I	CCWWGG	2 cut(s)	1483, 1497
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	1483, 1497
FaeI	CATG	3 cut(s)	425, 1138, 1232
FaqI	GGGAC	1 cut(s)	1031
FatI	CATG	3 cut(s)	421, 1134, 1228
FauI	CCCGC	3 cut(s)	126, 330, 580
FbaI	TGATCA	2 cut(s)	864, 1179
FblI	GTMKAC	2 cut(s)	269, 551
Fnu4HI	GCNGC	3 cut(s)	313, 585, 1084
FokI	GGATG	3 cut(s)	53, 1478, 1514
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	3 cut(s)	313, 585, 1084
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	1531
GluI	GCNGC	3 cut(s)	313, 585, 1084
GsuI	CTGGAG	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	1533
HaeIII	GGCC	1 cut(s)	1496
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	2 cut(s)	122, 824
HhaI	GCGC	1 cut(s)	1532
Hin1II	CATG	3 cut(s)	425, 1138, 1232
Hin6I	GCGC	1 cut(s)	1530
HinP1I	GCGC	1 cut(s)	1530
HincII	GTYRAC	2 cut(s)	270, 406
HindII	GTYRAC	2 cut(s)	270, 406
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	4 cut(s)	307, 1128, 1267, 1369
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	4 cut(s)	367, 723, 1064, 1499
Hpy166II	GTNNAC	4 cut(s)	137, 270, 406, 552
Hpy188I	TCNGA	3 cut(s)	172, 1257, 1392
Hpy188III	TCNNGA	5 cut(s)	480, 671, 839, 1183, 1580
Hpy8I	GTNNAC	4 cut(s)	137, 270, 406, 552
Hpy99I	CGWCG	2 cut(s)	271, 274
HpyCH4III	ACNGT	5 cut(s)	267, 495, 1177, 1312, 1318
HpyCH4IV	ACGT	2 cut(s)	113, 1218
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 329, 439, 1421, 1426
HpyF3I	CTNAG	6 cut(s)	409, 501, 1347, 1367, 1391, 1416
HpySE526I	ACGT	2 cut(s)	113, 1218
Hsp92II	CATG	3 cut(s)	425, 1138, 1232
HspAI	GCGC	1 cut(s)	1530
Ksp22I	TGATCA	2 cut(s)	864, 1179
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	83, 802, 864, 1159, 1179
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	4 cut(s)	173, 1205, 1395, 1523
Lsp1109I	GCAGC	2 cut(s)	299, 1070
LweI	GCATC	8 cut(s)	31, 120, 454, 676, 727, 784, 1402, 1456
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	113, 1218
MaeIII	GTNAC	6 cut(s)	109, 742, 952, 1037, 1057, 1312
MalI	GATC	5 cut(s)	85, 804, 866, 1161, 1181
MboI	GATC	5 cut(s)	83, 802, 864, 1159, 1179
MboII	GAAGA	5 cut(s)	51, 709, 799, 896, 1292
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	119, 170
MlsI	TGGCCA	1 cut(s)	1496
MluCI	AATT	8 cut(s)	16, 147, 282, 324, 592, 759, 845, 1097
MluNI	TGGCCA	1 cut(s)	1496
MlyI	GAGTC	2 cut(s)	301, 1378
MmeI	TCCRAC	2 cut(s)	195, 250
Mox20I	TGGCCA	1 cut(s)	1496
MroXI	GAANNNNTTC	2 cut(s)	58, 935
MscI	TGGCCA	1 cut(s)	1496
MseI	TTAA	6 cut(s)	396, 405, 981, 1101, 1332, 1476
MslI	CAYNNNNRTG	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	1496
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	435, 1050
Mva1269I	GAATGC	1 cut(s)	686
MvaI	CCWGG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	5 cut(s)	41, 329, 439, 1421, 1426
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	5 cut(s)	83, 802, 864, 1159, 1179
NlaIII	CATG	3 cut(s)	425, 1138, 1232
NlaIV	GGNNCC	2 cut(s)	85, 169
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	3 cut(s)	952, 1057, 1312
PciSI	GCTCTTC	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	1 cut(s)	452
PctI	GAATGC	1 cut(s)	686
PdmI	GAANNNNTTC	2 cut(s)	58, 935
PfeI	GAWTC	2 cut(s)	1128, 1267
PflFI	GACNNNGTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	1520
PkrI	GCNGC	3 cut(s)	314, 586, 1085
PleI	GAGTC	2 cut(s)	301, 1377
PpsI	GAGTC	2 cut(s)	301, 1377
Ppu21I	YACGTR	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	1577
Psp5II	RGGWCCY	1 cut(s)	1577
Psp6I	CCWGG	1 cut(s)	1048
PspGI	CCWGG	1 cut(s)	1048
PspN4I	GGNNCC	2 cut(s)	85, 169
PspPI	GGNCC	1 cut(s)	1577
PspPPI	RGGWCCY	1 cut(s)	1577
PstI	CTGCAG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	265
RsaI	GTAC	3 cut(s)	492, 643, 1274
RsaNI	GTAC	3 cut(s)	491, 642, 1273
RseI	CAYNNNNRTG	1 cut(s)	375
SalI	GTCGAC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	909
SaqAI	TTAA	6 cut(s)	396, 405, 981, 1101, 1332, 1476
SatI	GCNGC	3 cut(s)	313, 585, 1084
Sau3AI	GATC	5 cut(s)	83, 802, 864, 1159, 1179
Sau96I	GGNCC	1 cut(s)	1577
ScaI	AGTACT	1 cut(s)	643
SchI	GAGTC	2 cut(s)	301, 1378
ScrFI	CCNGG	2 cut(s)	435, 1050
SduI	GDGCHC	2 cut(s)	119, 170
SfaNI	GCATC	8 cut(s)	31, 120, 454, 676, 727, 784, 1402, 1456
SfcI	CTRYAG	2 cut(s)	313, 958
SgrDI	CGTCGACG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	1577
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
Sse9I	AATT	8 cut(s)	16, 147, 282, 324, 592, 759, 845, 1097
SsiI	CCGC	5 cut(s)	119, 243, 337, 584, 587
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	433, 1048
StyI	CCWWGG	2 cut(s)	1483, 1497
TaaI	ACNGT	5 cut(s)	267, 495, 1177, 1312, 1318
TaiI	ACGT	2 cut(s)	116, 1221
TaqI	TCGA	2 cut(s)	269, 345
TasI	AATT	8 cut(s)	16, 147, 282, 324, 592, 759, 845, 1097
TatI	WGTACW	3 cut(s)	490, 641, 1272
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	1128, 1267
Tru1I	TTAA	6 cut(s)	396, 405, 981, 1101, 1332, 1476
Tru9I	TTAA	6 cut(s)	396, 405, 981, 1101, 1332, 1476
TscAI	CASTG	7 cut(s)	301, 474, 586, 658, 1182, 1351, 1555
TseFI	GTSAC	3 cut(s)	952, 1057, 1312
TseI	GCWGC	2 cut(s)	312, 1083
Tsp45I	GTSAC	3 cut(s)	952, 1057, 1312
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	7 cut(s)	301, 474, 586, 658, 1182, 1351, 1555
Tth111I	GACNNNGTC	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	1520
VpaK11BI	GGWCC	1 cut(s)	1577
XagI	CCTNNNNNAGG	1 cut(s)	1121
XapI	RAATTY	4 cut(s)	147, 592, 845, 1097
XbaI	TCTAGA	1 cut(s)	479
XmiI	GTMKAC	2 cut(s)	269, 551
XmnI	GAANNNNTTC	2 cut(s)	58, 935
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.