Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00163

Orthogroup ID

OG0007568

Physical Location & Seq

Genomic Coordinates Forward (+)

33519 .. 35782

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGCCCCTCACAAGACCCCTTATTCCTACCCAGTCCTTCCGCTTCGCTCCCTCCGATGCCCTTGTCGCCGACAAAGCAATCACCTACCTCAAGCGCCACCCCCACAACCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTACTCCTCAAGTCCCAATTCGACCAAACCCTAACCCTAAAGTTCCTCAGTTGGGCTCGCAACCACCACCACCACCACCGCTTCTTCACCTTCCAGAGCAAGTGCCTCGCCCTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGGCCCTCGCCGAGGACGTCGCCGTCAACACCGTCGACGACAGGGGCAATTTGGTCTTTCAGTGCCTCACGGACTCGCTGCAGGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATAAAGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCCGGTGTGCTTTCGTATAATGCGATTTTAGATGCTGTGATTAGGTCTAGAGGGTCTGCTCAGTTTGCTGAGGAGGTTTTTAGTGAGATGATTAGGAATGGGGTTTCGCCGAATGTGTATACATATAACATTTTGATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTGTTGTACTTTTGGAGTGAAATGGAGAGGAATGGGTGTCTGCCGAATGTGGTTACGTATAATACGTTGATTGATGCTTATTGTAAGTTGAAGAGGATGGATGACGCGTTCGGATTGTTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTGGTGATTAATGGGTTGTGTCGAGAAGGGAGGATGAATGAGACTGGTCAGATTCTTGAGGAGATGAAAAGGAAGGGTTTTGTTCCTGACGAGGTGACGAATAATACACTCATTAGTGGGTATTGCAAGGAAGGTAATTTTCACCAAGCACTTGTGTTGCAAGAGGAGATGCGGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCATTGATCAATGCCATGTGTAAGGCTAAGAATTTGAATCGAGCAATGGAGTTTTTTGAGCAGATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACGTATACTACATTGATAGATGGCTTCGCCCAACAAGGGTTCTTAAATGAAGCTTACGGTCTTCTGAATGAAATGGTTGGGCGTGGATTTTCTCCTTCAGTTGTGACTTACAATGCCCTTATCAATGGATACTGCTTATTAGGCAGGATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGATGTTGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAACTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCTGTTACCTATTCATCACTAATTCAAGGTGTCTGTCAGCAAGGGAGACTAGTTGACGCTTGTGATCTGTTCCAAGAAATGATAAGTATGGGAAGGGATTTGAATAAGGCTCTTCAGTTGAATGATGAACTGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAAGCTCGGACAAGAGAAGCAAAGAAGCTTCTACTGAAGTTGTTCTATGATAACTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACAAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATAAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGGAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACTGTTATTGCACTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGTGAACACTCTGAGGAGCTGTGAGCTTACTGATGCTGAGCTTGCAAAGCTGCTTGTTGAAACAAATCATAAAGAAGGAAATTTGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTCCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

736

Amino Acids

82.19

Weight (kDa)

6.64

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	152 - 275	6.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	158 - 214	4.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	168 - 216	9.7e-13	PPR repeat family
PPR_3	PF13812	193 - 251	3.2e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	200 - 232	4.3e-06	PPR repeat
PPR	PF01535	207 - 237	1.8e-06	PPR repeat
PPR_2	PF13041	209 - 250	2.5e-12	PPR repeat family
PPR_3	PF13812	231 - 284	7.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	235 - 267	7.2e-14	PPR repeat
PPR_2	PF13041	239 - 288	7.7e-19	PPR repeat family
PPR	PF01535	242 - 271	4.8e-08	PPR repeat
PPR_1	PF12854	270 - 303	2.7e-10	PPR repeat
PPR_2	PF13041	274 - 320	5.3e-14	PPR repeat family
PPR	PF01535	277 - 307	6.8e-07	PPR repeat
PPR_long	PF17177	293 - 406	2.5e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	298 - 356	8.7e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	305 - 338	6.3e-10	PPR repeat
PPR_2	PF13041	309 - 358	2.2e-18	PPR repeat family
PPR	PF01535	315 - 342	2.5e-06	PPR repeat
PPR_3	PF13812	334 - 389	2.7e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	340 - 373	2.6e-13	PPR repeat
PPR_2	PF13041	344 - 392	6.2e-19	PPR repeat family
PPR	PF01535	347 - 377	2.3e-07	PPR repeat
TPR_24	PF23276	348 - 440	3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	370 - 426	6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	375 - 408	7e-11	PPR repeat
PPR_2	PF13041	383 - 427	2.9e-14	PPR repeat family
PPR	PF01535	383 - 412	2.3e-07	PPR repeat
PPR_long	PF17177	397 - 501	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	410 - 443	3e-11	PPR repeat
PPR_2	PF13041	414 - 463	1.2e-17	PPR repeat family
PPR	PF01535	417 - 447	7.7e-09	PPR repeat
PPR_3	PF13812	438 - 494	2.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	445 - 478	4.5e-10	PPR repeat
PPR_2	PF13041	449 - 498	2.1e-17	PPR repeat family
PPR_1	PF12854	480 - 512	4.3e-12	PPR repeat
PPR	PF01535	487 - 516	6.7e-07	PPR repeat
PPR_2	PF13041	518 - 549	6.2e-07	PPR repeat family
PPR_1	PF12854	532 - 561	8.8e-06	PPR repeat
PPR_1	PF12854	619 - 649	1.1e-06	PPR repeat
PPR_2	PF13041	621 - 668	1e-08	PPR repeat family
PPR	PF01535	625 - 654	4.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39710
fragaria_vesca	FvH4_2g06720
malus_domestica	MD10G1090200.v1.1
prunus_persica	Prupe.7G039700_v2.0.a1 Prupe.8G118500_v2.0.a1
pyrus_communis	pycom10g07360
rosa_chinensis	RchiOBHm_Chr6g0258901
rosa_laevigata	RLG00000001283 RLG00000002770 RLG00000014575
rosa_multiflora	Rmu_sc0008314.1_g000010 Rmu_sc0026245.1_g000001 Rmu_sc0034932.1_g000001 Rmu_sc0042869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206140 Rroxscaffold_7G00206330
rosa_rugosa	Rorug05G0584200
rosa_samantha	Rh6BG092000 Rh6BG092400 Rh6CG089600 Rh6DG083900 Rh7DG423700
rosa_wichuraiana	Rw0G004300 Rw6G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	2183
AccI	GTMKAC	3 cut(s)	339, 620, 1151
AccII	CGCG	1 cut(s)	779
AciI	CCGC	9 cut(s)	40, 144, 232, 280, 300, 407, 653, 656, 1012
AcoI	YGGCCR	1 cut(s)	2157
AcsI	RAATTY	5 cut(s)	445, 661, 1081, 1760, 2122
AcuI	CTGAAG	4 cut(s)	159, 1227, 1553, 1706
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	4 cut(s)	680, 1317, 1366, 1937
AfeI	AGCGCT	1 cut(s)	2194
AfiI	CCNNNNNNNGG	5 cut(s)	205, 316, 1182, 1786, 2183
AflIII	ACRYGT	1 cut(s)	777
AhlI	ACTAGT	1 cut(s)	1504
AjnI	CCWGG	1 cut(s)	303
AloI	GAACNNNNNNTCC	2 cut(s)	764, 796
Alw26I	GTCTC	4 cut(s)	875, 1032, 1495, 2174
Aor51HI	AGCGCT	1 cut(s)	2194
AoxI	GGCC	2 cut(s)	306, 2157
ApeKI	GCWGC	3 cut(s)	382, 1746, 2092
ApoI	RAATTY	5 cut(s)	445, 661, 1081, 1760, 2122
AseI	ATTAAT	1 cut(s)	849
Asp700I	GAANNNNTTC	2 cut(s)	1598, 1691
AspLEI	GCGC	2 cut(s)	96, 2195
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	2159
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	1199
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	369, 1733, 2079
BccI	CCATC	7 cut(s)	763, 793, 1160, 1288, 1417, 1423, 2159
BceAI	ACGGC	1 cut(s)	311
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	1268
BclI	TGATCA	1 cut(s)	1056
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	4 cut(s)	875, 1032, 1495, 2174
BcuI	ACTAGT	1 cut(s)	1504
BfaI	CTAG	2 cut(s)	549, 1505
BfmI	CTRYAG	2 cut(s)	383, 1621
BfoI	RGCGCY	2 cut(s)	97, 2196
BfuAI	ACCTGC	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	1268
BisI	GCNGC	5 cut(s)	144, 383, 654, 1747, 2093
BlpI	GCTNAGC	1 cut(s)	2079
BlsI	GCNGC	5 cut(s)	145, 384, 655, 1748, 2094
BmcAI	AGTACT	1 cut(s)	1366
Bme1390I	CCNGG	2 cut(s)	305, 504
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	819
BmrFI	CCNGG	2 cut(s)	305, 504
BmrI	ACTGGG	2 cut(s)	25, 1386
BmsI	GCATC	9 cut(s)	46, 523, 736, 999, 1104, 1399, 1444, 2065, 2119
BmuI	ACTGGG	2 cut(s)	25, 1386
BpiI	GAAGAC	1 cut(s)	1199
BpmI	CTGGAG	1 cut(s)	1421
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	2079
BpuEI	CTTGAG	3 cut(s)	74, 146, 917
BpuMI	CCSGG	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	797
BsaAI	YACGTR	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	2174
BsaJI	CCNNGG	4 cut(s)	303, 315, 2146, 2160
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 316, 1182, 1786, 2183
Bse1I	ACTGG	4 cut(s)	31, 889, 1381, 1404
Bse3DI	GCAATG	2 cut(s)	1101, 1311
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	797
BseDI	CCNNGG	4 cut(s)	303, 315, 2146, 2160
BseGI	GGATG	7 cut(s)	270, 774, 778, 879, 1299, 2134, 2170
BseLI	CCNNNNNNNGG	5 cut(s)	205, 316, 1182, 1786, 2183
BseMI	GCAATG	2 cut(s)	1101, 1311
BseMII	CTCAG	7 cut(s)	214, 561, 575, 2001, 2021, 2045, 2070
BseNI	ACTGG	4 cut(s)	31, 889, 1381, 1404
BseRI	GAGGAG	5 cut(s)	149, 587, 914, 1019, 2071
BseXI	GCAGC	3 cut(s)	369, 1733, 2079
BsgI	GTGCAG	1 cut(s)	1732
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	2 cut(s)	308, 2159
BshVI	ATCGAT	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	151, 1694
BslI	CCNNNNNNNGG	5 cut(s)	205, 316, 1182, 1786, 2183
BsmAI	GTCTC	4 cut(s)	875, 1032, 1495, 2174
BsmFI	GGGAC	2 cut(s)	151, 1694
BsmI	GAATGC	1 cut(s)	1409
BsnI	GGCC	2 cut(s)	308, 2159
Bso31I	GGTCTC	1 cut(s)	2174
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	2 cut(s)	1315, 1935
Bsp143I	GATC	4 cut(s)	794, 1056, 1519, 1822
Bsp1720I	GCTNAGC	1 cut(s)	2079
BspACI	CCGC	9 cut(s)	40, 144, 232, 280, 300, 407, 653, 656, 1012
BspANI	GGCC	2 cut(s)	308, 2159
BspCNI	CTCAG	7 cut(s)	213, 562, 574, 2002, 2022, 2046, 2071
BspDI	ATCGAT	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	1 cut(s)	819
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	1572
BspTNI	GGTCTC	1 cut(s)	2174
BsrDI	GCAATG	2 cut(s)	1101, 1311
BsrGI	TGTACA	2 cut(s)	1315, 1935
BsrI	ACTGG	4 cut(s)	31, 889, 1381, 1404
BssECI	CCNNGG	4 cut(s)	303, 315, 2146, 2160
BssMI	GATC	4 cut(s)	794, 1056, 1519, 1822
BssNAI	GTATAC	2 cut(s)	621, 1152
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	2 cut(s)	2146, 2160
Bst1107I	GTATAC	2 cut(s)	621, 1152
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	6 cut(s)	337, 1205, 1625, 1840, 1975, 1981
Bst6I	CTCTTC	4 cut(s)	127, 758, 1293, 1572
BstACI	GRCGYC	1 cut(s)	321
BstAUI	TGTACA	2 cut(s)	1315, 1935
BstBAI	YACGTR	1 cut(s)	729
BstC8I	GCNNGC	3 cut(s)	211, 2085, 2191
BstDEI	CTNAG	9 cut(s)	200, 478, 561, 570, 1077, 2010, 2030, 2054, 2079
BstENI	CCTNNNNNAGG	2 cut(s)	314, 1784
BstF5I	GGATG	7 cut(s)	270, 774, 778, 879, 1299, 2134, 2170
BstFNI	CGCG	1 cut(s)	779
BstH2I	RGCGCY	2 cut(s)	97, 2196
BstHHI	GCGC	2 cut(s)	96, 2195
BstKTI	GATC	4 cut(s)	797, 1059, 1522, 1825
BstMAI	GTCTC	4 cut(s)	875, 1032, 1495, 2174
BstMBI	GATC	4 cut(s)	794, 1056, 1519, 1822
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 74, 399, 508, 566, 1287, 2084, 2089
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	303, 502
BstSFI	CTRYAG	2 cut(s)	383, 1621
BstSNI	TACGTA	1 cut(s)	729
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	3 cut(s)	369, 1733, 2079
BstV2I	GAAGAC	1 cut(s)	1199
BstZ17I	GTATAC	2 cut(s)	621, 1152
Bsu15I	ATCGAT	1 cut(s)	797
BsuI	GTATCC	1 cut(s)	1268
BsuRI	GGCC	2 cut(s)	308, 2159
BsuTUI	ATCGAT	1 cut(s)	797
BtsCI	GGATG	7 cut(s)	270, 774, 778, 879, 1299, 2134, 2170
BtsIMutI	CAGTG	7 cut(s)	371, 655, 1374, 1630, 1845, 1988, 2007
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	211, 2085, 2191
CfoI	GCGC	2 cut(s)	96, 2195
Cfr13I	GGNCC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	797
CseI	GACGC	2 cut(s)	785, 1520
Csp6I	GTAC	4 cut(s)	679, 1316, 1365, 1936
CviAII	CATG	4 cut(s)	491, 1066, 1798, 1892
CviQI	GTAC	4 cut(s)	679, 1316, 1365, 1936
DdeI	CTNAG	9 cut(s)	200, 478, 561, 570, 1077, 2010, 2030, 2054, 2079
DpnI	GATC	4 cut(s)	796, 1058, 1521, 1824
DpnII	GATC	4 cut(s)	794, 1056, 1519, 1822
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	2157
Eam1104I	CTCTTC	4 cut(s)	127, 758, 1293, 1572
EarI	CTCTTC	4 cut(s)	127, 758, 1293, 1572
EciI	GGCGGA	1 cut(s)	289
Eco105I	TACGTA	1 cut(s)	729
Eco130I	CCWWGG	2 cut(s)	2146, 2160
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	2174
Eco47III	AGCGCT	1 cut(s)	2194
Eco57I	CTGAAG	4 cut(s)	159, 1227, 1553, 1706
EcoNI	CCTNNNNNAGG	2 cut(s)	314, 1784
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	2146, 2160
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	2146, 2160
FaeI	CATG	4 cut(s)	494, 1069, 1801, 1895
FaqI	GGGAC	2 cut(s)	151, 1694
FatI	CATG	4 cut(s)	490, 1065, 1797, 1891
FauI	CCCGC	2 cut(s)	287, 649
FbaI	TGATCA	1 cut(s)	1056
FblI	GTMKAC	3 cut(s)	339, 620, 1151
Fnu4HI	GCNGC	5 cut(s)	144, 383, 654, 1747, 2093
FokI	GGATG	7 cut(s)	257, 781, 785, 886, 1306, 2141, 2177
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	5 cut(s)	144, 383, 654, 1747, 2093
FspBI	CTAG	2 cut(s)	549, 1505
GlaI	GCGC	2 cut(s)	95, 2194
GluI	GCNGC	5 cut(s)	144, 383, 654, 1747, 2093
GsuI	CTGGAG	1 cut(s)	1421
HaeII	RGCGCY	2 cut(s)	97, 2196
HaeIII	GGCC	2 cut(s)	308, 2159
HapII	CCGG	1 cut(s)	504
HgaI	GACGC	2 cut(s)	785, 1520
HhaI	GCGC	2 cut(s)	96, 2195
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	494, 1069, 1801, 1895
Hin6I	GCGC	2 cut(s)	94, 2193
HinP1I	GCGC	2 cut(s)	94, 2193
HincII	GTYRAC	4 cut(s)	331, 340, 475, 1510
HindII	GTYRAC	4 cut(s)	331, 340, 475, 1510
HindIII	AAGCTT	2 cut(s)	1197, 1676
HinfI	GANTC	6 cut(s)	377, 892, 1087, 1791, 1930, 2032
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	1 cut(s)	504
Hpy166II	GTNNAC	7 cut(s)	331, 340, 475, 621, 1152, 1510, 2047
Hpy188I	TCNGA	7 cut(s)	55, 785, 891, 1032, 1212, 1659, 2055
Hpy188III	TCNNGA	7 cut(s)	247, 549, 863, 896, 926, 1394, 1919
Hpy8I	GTNNAC	7 cut(s)	331, 340, 475, 621, 1152, 1510, 2047
Hpy99I	CGWCG	3 cut(s)	326, 341, 344
HpyCH4III	ACNGT	6 cut(s)	337, 1205, 1625, 1840, 1975, 1981
HpyCH4IV	ACGT	5 cut(s)	321, 728, 737, 1148, 1881
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 74, 399, 508, 566, 1287, 2084, 2089
HpyF3I	CTNAG	9 cut(s)	200, 478, 561, 570, 1077, 2010, 2030, 2054, 2079
HpySE526I	ACGT	5 cut(s)	321, 728, 737, 1148, 1881
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	494, 1069, 1801, 1895
HspAI	GCGC	2 cut(s)	94, 2193
Ksp22I	TGATCA	1 cut(s)	1056
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	794, 1056, 1519, 1822
LguI	GCTCTTC	1 cut(s)	1572
LmnI	GCTCC	5 cut(s)	52, 817, 1868, 2058, 2186
Lsp1109I	GCAGC	3 cut(s)	369, 1733, 2079
LweI	GCATC	9 cut(s)	46, 523, 736, 999, 1104, 1399, 1444, 2065, 2119
MaeI	CTAG	2 cut(s)	549, 1505
MaeII	ACGT	5 cut(s)	321, 728, 737, 1148, 1881
MaeIII	GTNAC	8 cut(s)	724, 934, 1039, 1249, 1459, 1615, 1720, 1975
MalI	GATC	4 cut(s)	796, 1058, 1521, 1824
MboI	GATC	4 cut(s)	794, 1056, 1519, 1822
MboII	GAAGA	8 cut(s)	114, 229, 775, 1199, 1310, 1432, 1559, 1955
MhlI	GDGCHC	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	2159
MluI	ACGCGT	1 cut(s)	777
MluNI	TGGCCA	1 cut(s)	2159
MlyI	GAGTC	2 cut(s)	371, 2041
Mox20I	TGGCCA	1 cut(s)	2159
MroXI	GAANNNNTTC	2 cut(s)	1598, 1691
MscI	TGGCCA	1 cut(s)	2159
MseI	TTAA	8 cut(s)	465, 474, 849, 1190, 1644, 1764, 1995, 2139
Msp20I	TGGCCA	1 cut(s)	2159
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	305, 504
Mva1269I	GAATGC	1 cut(s)	1409
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	8 cut(s)	65, 74, 399, 508, 566, 1287, 2084, 2089
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	4 cut(s)	794, 1056, 1519, 1822
NlaIII	CATG	4 cut(s)	494, 1069, 1801, 1895
NlaIV	GGNNCC	1 cut(s)	819
NmeAIII	GCCGAG	2 cut(s)	340, 383
NmuCI	GTSAC	6 cut(s)	934, 1039, 1249, 1615, 1720, 1975
PciSI	GCTCTTC	1 cut(s)	1572
PcsI	WCGNNNNNNNCGW	4 cut(s)	51, 318, 521, 734
PctI	GAATGC	1 cut(s)	1409
PdmI	GAANNNNTTC	2 cut(s)	1598, 1691
PfeI	GAWTC	4 cut(s)	892, 1087, 1791, 1930
PflFI	GACNNNGTC	1 cut(s)	1131
PflMI	CCANNNNNTGG	1 cut(s)	2183
PkrI	GCNGC	5 cut(s)	145, 384, 655, 1748, 2094
PleI	GAGTC	2 cut(s)	371, 2040
PpsI	GAGTC	2 cut(s)	371, 2040
Ppu21I	YACGTR	1 cut(s)	729
PshBI	ATTAAT	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	819
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	1131
RsaI	GTAC	4 cut(s)	680, 1317, 1366, 1937
RsaNI	GTAC	4 cut(s)	679, 1316, 1365, 1936
SalI	GTCGAC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	1572
SaqAI	TTAA	8 cut(s)	465, 474, 849, 1190, 1644, 1764, 1995, 2139
SatI	GCNGC	5 cut(s)	144, 383, 654, 1747, 2093
Sau3AI	GATC	4 cut(s)	794, 1056, 1519, 1822
Sau96I	GGNCC	1 cut(s)	307
ScaI	AGTACT	1 cut(s)	1366
SchI	GAGTC	2 cut(s)	371, 2041
ScrFI	CCNGG	2 cut(s)	305, 504
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	9 cut(s)	46, 523, 736, 999, 1104, 1399, 1444, 2065, 2119
SfcI	CTRYAG	2 cut(s)	383, 1621
SgrDI	CGTCGACG	1 cut(s)	338
SmlI	CTYRAG	3 cut(s)	89, 161, 896
SmoI	CTYRAG	3 cut(s)	89, 161, 896
SnaBI	TACGTA	1 cut(s)	729
SpeI	ACTAGT	1 cut(s)	1504
SsiI	CCGC	9 cut(s)	40, 144, 232, 280, 300, 407, 653, 656, 1012
SspMI	CTAG	2 cut(s)	549, 1505
StyD4I	CCNGG	2 cut(s)	303, 502
StyI	CCWWGG	2 cut(s)	2146, 2160
TaaI	ACNGT	6 cut(s)	337, 1205, 1625, 1840, 1975, 1981
TaiI	ACGT	5 cut(s)	324, 731, 740, 1151, 1884
TaqI	TCGA	6 cut(s)	174, 339, 414, 797, 862, 1090
TatI	WGTACW	4 cut(s)	678, 1315, 1364, 1935
TauI	GCSGC	2 cut(s)	146, 656
TfiI	GAWTC	4 cut(s)	892, 1087, 1791, 1930
Tru1I	TTAA	8 cut(s)	465, 474, 849, 1190, 1644, 1764, 1995, 2139
Tru9I	TTAA	8 cut(s)	465, 474, 849, 1190, 1644, 1764, 1995, 2139
TscAI	CASTG	7 cut(s)	371, 655, 1381, 1630, 1845, 1995, 2014
TseFI	GTSAC	6 cut(s)	934, 1039, 1249, 1615, 1720, 1975
TseI	GCWGC	3 cut(s)	382, 1746, 2092
Tsp45I	GTSAC	6 cut(s)	934, 1039, 1249, 1615, 1720, 1975
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	7 cut(s)	371, 655, 1381, 1630, 1845, 1995, 2014
Tth111I	GACNNNGTC	1 cut(s)	1131
Van91I	CCANNNNNTGG	1 cut(s)	2183
VspI	ATTAAT	1 cut(s)	849
XagI	CCTNNNNNAGG	2 cut(s)	314, 1784
XapI	RAATTY	5 cut(s)	445, 661, 1081, 1760, 2122
XbaI	TCTAGA	1 cut(s)	548
XmiI	GTMKAC	3 cut(s)	339, 620, 1151
XmnI	GAANNNNTTC	2 cut(s)	1598, 1691
XspI	CTAG	2 cut(s)	549, 1505
ZraI	GACGTC	1 cut(s)	322
ZrmI	AGTACT	1 cut(s)	1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.